RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NEU4Q8WWR8 484 aaPredicted RBP7.85□□□□□ -1.15
NUP54-215ENST00000514313 RITA1Q96K30 269 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 KRTAP4-12Q9BQ66 201 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 ZNF341Q9BYN7 854 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 GLIS2Q9BZE0 524 aaPredicted RBP7.85□□□□□ -1.15
NUP54-215ENST00000514313 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.85□□□□□ -1.15
NUP54-215ENST00000514313 ATP8A2Q9NTI2 1148 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 TNFSF13BQ9Y275 285 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 CLDN16Q9Y5I7 305 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 SNX8Q9Y5X2 465 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 A0A0A0MQY5 61 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 C1QTNF3-AMACRE9PGA6 284 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 POC1B-GALNT4F8VUJ3 575 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 UBE2Q2LH0YL09 131 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 USP12O75317 370 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 SEC31AO94979 1220 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 DDAH2O95865 285 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 SERPINC1P01008 464 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 EIF2S1P05198 315 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 RARGP13631 454 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 TTKP33981 857 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 GARSP41250 739 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 SKIV2L2P42285 1042 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 BLKP51451 505 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 CEBPZQ03701 1054 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 MTA1Q13330 715 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 BECN1Q14457 450 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 RBM44Q6ZP01 1051 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 PRRT2Q7Z6L0 340 aaPredicted RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 UEVLDQ8IX04 471 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 CCDC105Q8IYK2 499 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 ARHGEF2Q92974 986 aaKnown RBP7.84□□□□□ -1.15
NUP54-215ENST00000514313 CALML4Q96GE6 196 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 WDFY2Q96P53 400 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 FRG2BQ96QU4 278 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 IFT27Q9BW83 186 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 TM2D2Q9BX73 214 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 CPNE5Q9HCH3 593 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 BABAM1Q9NWV8 329 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 EHD2Q9NZN4 543 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 CDH22Q9UJ99 828 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 RPS6KA6Q9UK32 745 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 ADAM18Q9Y3Q7 739 aa7.84□□□□□ -1.15
NUP54-215ENST00000514313 TMEM247A6NEH6 219 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 TARM1B6A8C7 271 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 TSPAN9O75954 239 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 PGM3O95394 542 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 INSRRP14616 1297 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 EDN2P20800 178 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 POU1F1P28069 291 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 PSMB10P40306 273 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 CYP2J2P51589 502 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 CYP4A11Q02928 519 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 ME3Q16798 604 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 EDRF1Q3B7T1 1238 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 SERTAD4-AS1Q5TG53 156 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 Q6ZPA2 131 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 PRSS45Q7RTY3 260 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 C16orf71Q8IYS4 520 aaPredicted RBP7.83□□□□□ -1.16
NUP54-215ENST00000514313 PIGKQ92643 395 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 SMARCE1Q969G3 411 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 SLF1Q9BQI6 1058 aa7.83□□□□□ -1.16
NUP54-215ENST00000514313 INTS6Q9UL03 887 aaKnown RBP7.83□□□□□ -1.16
NUP54-215ENST00000514313 A0A1W2PQF6 199 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 ARHGAP10A1A4S6 786 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 NPIPB8E9PQR5 432 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 SMIM22K7EJ46 135 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 BCAT2O15382 392 aaPredicted RBP7.82□□□□□ -1.16
NUP54-215ENST00000514313 MSI1O43347 362 aaKnown RBP7.82□□□□□ -1.16
NUP54-215ENST00000514313 LIASO43766 372 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 PAGE4O60829 102 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 DNTTP04053 509 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 TACR3P29371 465 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 GALNT3Q14435 633 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 GSTA3Q16772 222 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 KIAA1755Q5JYT7 1200 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 VWA5B1Q5TIE3 1220 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 ZNF627Q7L945 461 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 C17orf53Q8N3J3 647 aaPredicted RBP7.82□□□□□ -1.16
NUP54-215ENST00000514313 GDPD5Q8WTR4 605 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 LARP4BQ92615 738 aaKnown RBP7.82□□□□□ -1.16
NUP54-215ENST00000514313 KAT6AQ92794 2004 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 FAM149B1Q96BN6 582 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 UROC1Q96N76 676 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 TEFMQ96QE5 360 aaKnown RBP7.82□□□□□ -1.16
NUP54-215ENST00000514313 TIMP4Q99727 224 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 POLR1BQ9H9Y6 1135 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 GRHL1Q9NZI5 618 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 NCKIPSDQ9NZQ3 722 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 CTNNAL1Q9UBT7 734 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 MAFFQ9ULX9 164 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 SLC8A2Q9UPR5 921 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 TMEM5Q9Y2B1 443 aa7.82□□□□□ -1.16
NUP54-215ENST00000514313 HNRNPCL1O60812 293 aaKnown RBP7.81□□□□□ -1.16
NUP54-215ENST00000514313 IL1AP01583 271 aa7.81□□□□□ -1.16
NUP54-215ENST00000514313 CHRM5P08912 532 aaPredicted RBP7.81□□□□□ -1.16
NUP54-215ENST00000514313 NHLRC4P0CG21 123 aaPredicted RBP7.81□□□□□ -1.16
NUP54-215ENST00000514313 ZNF8P17098 575 aaPredicted RBP7.81□□□□□ -1.16
NUP54-215ENST00000514313 CDH2P19022 906 aaPredicted RBP7.81□□□□□ -1.16
NUP54-215ENST00000514313 HOXA7P31268 230 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms