RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 TUBE1Q9UJT0 475 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 CNTN6Q9UQ52 1028 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 TELO2Q9Y4R8 837 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 NSD2O96028 1365 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 TMEM94Q12767 1356 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS29-210ENST00000552130 A0A087WWL8 130 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 SYCE3A1L190 88 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 PRAMEF22A3QJZ6 481 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 OR6C76A6NM76 312 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 CTDSP2O14595 271 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 NRP2O60462 931 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 HNRNPCL1O60812 293 aaKnown RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 OPHN1O60890 802 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 EIF2S1P05198 315 aaKnown RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 GLI4P10075 376 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 CDH2P19022 906 aaPredicted RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 CD9P21926 228 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TNFRSF8P28908 595 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 KRTAP1-1Q07627 177 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 SP140Q13342 867 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TUBB2AQ13885 445 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 SLC29A2Q14542 456 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 MXD4Q14582 209 aaPredicted RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 GRM4Q14833 912 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 CLCA4Q14CN2 919 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 PDK1Q15118 436 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 IMMTQ16891 758 aaKnown RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 HFEQ30201 348 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 MYLK3Q32MK0 819 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 PRAMEF18Q5VWM3 479 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 DGAT2L7PQ6IED9 249 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 ETFRF1Q6IPR1 90 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 MSANTD1Q6ZTZ1 278 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 MARK2Q7KZI7 788 aaKnown RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 MIB1Q86YT6 1006 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 AFAP1Q8N556 730 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 SLC15A4Q8N697 577 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 DNAJC5GQ8N7S2 189 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 SLC16A11Q8NCK7 471 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 OR56B2PQ8NGI1 322 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 CCHCR1Q8TD31 782 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 POMGNT1Q8WZA1 660 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 CASP10Q92851 521 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TEKT1Q969V4 418 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 MED15Q96RN5 788 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TCF25Q9BQ70 676 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TUBB2BQ9BVA1 445 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 PACSIN1Q9BY11 444 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TAOK3Q9H2K8 898 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 DDX4Q9NQI0 724 aaKnown RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 SERINC1Q9NRX5 453 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TCP11L1Q9NUJ3 509 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 ATAD3AQ9NVI7 634 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 SPATA6Q9NWH7 488 aaPredicted RBP6.55□□□□□ -1.36
VPS29-210ENST00000552130 HMG20BQ9P0W2 317 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 WASF3Q9UPY6 502 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 CHKBQ9Y259 395 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 N6AMT1Q9Y5N5 214 aa6.55□□□□□ -1.36
VPS29-210ENST00000552130 TRBC2A0A5B9 178 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CTAGE15A4D2H0 777 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 C22orf46C9J442 243 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 H0YCG3 227 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SLC27A2O14975 620 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 MAGEB3O15480 346 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 VEGFDO43915 354 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SEC14L2O76054 403 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 RECQL5O94762 991 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 OR2C1O95371 312 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 PAHP00439 452 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 ABCB1P08183 1280 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 PRR35P0CG20 571 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CTAGE8P0CG41 777 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 TPBGLP0DKB5 382 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 PRG2P13727 222 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 AVPR2P30518 371 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 MSX2P35548 267 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 CCR10P46092 362 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CASP9P55211 416 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 NRG3P56975 720 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 PRAMEP78395 509 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SATB1Q01826 763 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 PPATQ06203 517 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CCDC15Q0P6D6 951 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 TBL3Q12788 808 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 SNX1Q13596 522 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SNTB1Q13884 538 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 NOLC1Q14978 699 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS29-210ENST00000552130 PROSER3Q2NL68 480 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CRY2Q49AN0 593 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SLC39A12Q504Y0 691 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CES4AQ5XG92 561 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CACNA2D4Q7Z3S7 1137 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 DSG4Q86SJ6 1040 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CTAGE6Q86UF2 777 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 ZNF761Q86XN6 746 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 CTAGE4Q8IX94 777 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 FBXW8Q8N3Y1 598 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 WDR60Q8WVS4 1066 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 198.8 ms