RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TDP1Q9NUW8 608 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 POU2F3Q9UKI9 436 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 PSME2Q9UL46 239 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 FTH1P02794 183 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 UGT2B4P06133 528 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 GRM5P41594 1212 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 ITGADQ13349 1161 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 NFATC2Q13469 925 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 GRIK5Q16478 980 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF677Q86XU0 584 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 B3GALT6Q96L58 329 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 ARHGEF3Q9NR81 526 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 GMIPQ9P107 970 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 TBK1Q9UHD2 729 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 YIPF1Q9Y548 306 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 SETBP1Q9Y6X0 1596 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 TFPIP10646 304 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 ACTR1BP42025 376 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 GTF2A1P52655 376 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 ACTR1AP61163 376 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 COPZ1P61923 177 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 STX4Q12846 297 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 BIKQ13323 160 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 MTF1Q14872 753 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 MON1AQ86VX9 555 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 GSPT2Q8IYD1 628 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 SIDT2Q8NBJ9 832 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 DENND1AQ8TEH3 1009 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 PBKQ96KB5 322 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 FAM124BQ9H5Z6 455 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 NCANO14594 1321 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 A0A096LPK6 155 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 LDB2O43679 373 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 FXR2P51116 673 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 NOVA1P51513 510 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 C6orf10Q5SRN2 563 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 GPR156Q8NFN8 814 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 NDC1Q9BTX1 674 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 ZYG11BQ9C0D3 744 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 OSBPL3Q9H4L5 887 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 RAB6BQ9NRW1 208 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 SNX8Q9Y5X2 465 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 WNT6Q9Y6F9 365 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 RFXAPO00287 272 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 MED24O75448 989 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 UGT1A1P22309 533 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 CASP1P29466 404 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 PTPN5P54829 565 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 MRPS15P82914 257 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 TDGQ13569 410 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 FBXO43Q4G163 708 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 PAOXQ6QHF9 649 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 OR6K2Q8NGY2 324 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 HHIPQ96QV1 700 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 TMEM209Q96SK2 561 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 HAUS4Q9H6D7 363 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 PALMDQ9NP74 551 aa9.39□□□□□ -0.91
LIMCH1-202ENST00000381753 SOWAHBA6NEL2 793 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CNTN5O94779 1100 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SOD2P04179 222 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MATKP42679 507 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MED21Q13503 144 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CAND1Q86VP6 1230 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 ADGRG2Q8IZP9 1017 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 LCN9Q8WX39 176 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 TMEM134Q9H6X4 195 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CNOT10Q9H9A5 744 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CARS2Q9HA77 564 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 KCTD5Q9NXV2 234 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CDC14AQ9UNH5 594 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SHOC2Q9UQ13 582 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MTMR6Q9Y217 621 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 HEPACAM2A8MVW5 462 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 UMPSP11172 480 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 COL6A1P12109 1028 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PTPN7P35236 360 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PXNP49023 591 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CLCNKBP51801 687 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PTENP60484 403 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 LONRF1Q17RB8 773 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PAGE2BQ5JRK9 111 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 TADA1Q96BN2 335 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 TASP1Q9H6P5 420 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 NHEJ1Q9H9Q4 299 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 AGPAT3Q9NRZ7 376 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 FGFR1OP2Q9NVK5 253 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MORC2Q9Y6X9 1032 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 CLUHO75153 1309 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PXDNLA1KZ92 1463 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 C1orf232A0A0U1RR37 186 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 A0A1W2PQH9 124 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MUSKO15146 869 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 TCEA1P23193 301 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 PRCPP42785 496 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 SEPHS1P49903 392 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 MORF4L2Q15014 288 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 KIAA2013Q8IYS2 634 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 DEFB106AQ8N104 65 aa9.38□□□□□ -0.91
LIMCH1-202ENST00000381753 B4GALNT2Q8NHY0 566 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms