RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CCT8L2Q96SF2 557 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 LGMNQ99538 433 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 CCSER2Q9H7U1 834 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 TRPM5Q9NZQ8 1165 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 CHMP2BQ9UQN3 213 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 ACTL7BQ9Y614 415 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 A0A0A0MRY4 1105 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 POC1B-GALNT4F8VUJ3 575 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 PER2O15055 1255 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 FAM107AO95990 144 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 ERCC2P18074 760 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 TPSB2P20231 275 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 CCT5P48643 541 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 RGS19P49795 217 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 EFEMP1Q12805 493 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 PDK1Q15118 436 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 TPSAB1Q15661 275 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 C3orf62Q6ZUJ4 267 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 CAND1Q86VP6 1230 aaKnown RBP23.22■■□□□ 1.31
CDX1-201ENST00000231656 PALM2Q8IXS6 379 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 ZNF276Q8N554 614 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 RNF34Q969K3 372 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 SPATA13Q96N96 652 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 TKTL2Q9H0I9 626 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 ACSS3Q9H6R3 686 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 ZNF334Q9HCZ1 680 aaPredicted RBP23.22■■□□□ 1.31
CDX1-201ENST00000231656 MAN1C1Q9NR34 630 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 INTS9Q9NV88 658 aaKnown RBP23.22■■□□□ 1.31
CDX1-201ENST00000231656 OBSL1O75147 1896 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 APRTP07741 180 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 EPCAMP16422 314 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 TPI1P60174 286 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 SEMA5AQ13591 1074 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 RTL10Q7L3V2 364 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 ADGRD2Q7Z7M1 963 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 NETO2Q8NC67 525 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 ZNF473Q8WTR7 871 aaKnown RBP23.22■■□□□ 1.31
CDX1-201ENST00000231656 SLC22A17Q8WUG5 538 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 LMAN2LQ9H0V9 348 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 DOCK6Q96HP0 2047 aa23.22■■□□□ 1.31
CDX1-201ENST00000231656 TMEM120BA0PK00 339 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 AVILO75366 819 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 PPP3CCP48454 512 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 ZNF135P52742 658 aaPredicted RBP23.21■■□□□ 1.31
CDX1-201ENST00000231656 NR1H3Q13133 447 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 PPM1LQ5SGD2 360 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 ANKRD20A2Q5SQ80 823 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 ANKRD20A1Q5TYW2 823 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 ANKRD20A3Q5VUR7 823 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 ARHGEF18Q6ZSZ5 1173 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 TMEM150AQ86TG1 271 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 RBM23Q86U06 439 aaKnown RBP23.21■■□□□ 1.31
CDX1-201ENST00000231656 FBF1Q8TES7 1133 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 TIFAQ96CG3 184 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 CDK5RAP1Q96SZ6 601 aaKnown RBP23.21■■□□□ 1.31
CDX1-201ENST00000231656 DHRS4Q9BTZ2 278 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 PRDM12Q9H4Q4 367 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 CCDC134Q9H6E4 229 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 TLR6Q9Y2C9 796 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 SNX10Q9Y5X0 201 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 RAD54BQ9Y620 910 aa23.21■■□□□ 1.31
CDX1-201ENST00000231656 DENND4CQ5VZ89 1909 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 PPP1R12AO14974 1030 aaPredicted RBP23.2■■□□□ 1.3
CDX1-201ENST00000231656 BRAFP15056 766 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 CCR1P32246 355 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 MAGEA3P43357 314 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 GEMIN4P57678 1058 aaKnown RBP23.2■■□□□ 1.3
CDX1-201ENST00000231656 EFTUD2Q15029 972 aaKnown RBP eCLIP23.2■■□□□ 1.3
CDX1-201ENST00000231656 ZNF534Q76KX8 674 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 TRABD2AQ86V40 505 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 ELMOD1Q8N336 334 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 P2RY11Q96G91 374 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 PRO3102Q9H379 93 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 IL21Q9HBE4 155 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 ARHGEF38Q9NXL2 777 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 MARCH2Q9P0N8 246 aa23.2■■□□□ 1.3
CDX1-201ENST00000231656 CCL16O15467 120 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 RFPL2O75678 378 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 F11P03951 625 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 SMAD3P84022 425 aaKnown RBP23.19■■□□□ 1.3
CDX1-201ENST00000231656 PPP2R5DQ14738 602 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 KLHL38Q2WGJ6 581 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 BRMS1LQ5PSV4 323 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 HECTD3Q5T447 861 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 CHRDL2Q6WN34 429 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 MIB1Q86YT6 1006 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 TP53INP2Q8IXH6 220 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 SRRM1Q8IYB3 904 aaKnown RBP23.19■■□□□ 1.3
CDX1-201ENST00000231656 SLC39A13Q96H72 371 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 TMEM51Q9NW97 253 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 PSMC3IPQ9P2W1 217 aaPredicted RBP23.19■■□□□ 1.3
CDX1-201ENST00000231656 RSPH14Q9UHP6 348 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 MYO18AQ92614 2054 aaKnown RBP23.19■■□□□ 1.3
CDX1-201ENST00000231656 RNF103O00237 685 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 AP1B1Q10567 949 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 WASHC5Q12768 1159 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 MPP2Q14168 576 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 PDZD4Q76G19 769 aaPredicted RBP23.19■■□□□ 1.3
CDX1-201ENST00000231656 TMC8Q8IU68 726 aa23.19■■□□□ 1.3
CDX1-201ENST00000231656 EPAS1Q99814 870 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms