RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	CDCA7L	Q96GN5	454 aa		10.84	□□□□□ -0.67
PNKP-231	ENST00000640501	IQSEC2	Q5JU85	1478 aa		10.83	□□□□□ -0.68
PNKP-231	ENST00000640501	AATK	Q6ZMQ8	1374 aa		10.83	□□□□□ -0.68
PNKP-231	ENST00000640501	LTK	P29376	864 aa		10.83	□□□□□ -0.68
PNKP-231	ENST00000640501	ADAMTSL3	P82987	1691 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	ROBO2	Q9HCK4	1378 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	XRN1	Q8IZH2	1706 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	SENP3-EIF4A1	A0A087X0R7	540 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	U2SURP	O15042	1029 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	CT47B1	P0C2W7	299 aa	Predicted RBP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	CALD1	Q05682	793 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	ANKLE2	Q86XL3	938 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	WWC1	Q8IX03	1113 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	TRMT2A	Q8IZ69	625 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	TCP11L2	Q8N4U5	519 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	AMOTL2	Q9Y2J4	779 aa		10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	SETD1B	Q9UPS6	1966 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-231	ENST00000640501	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	PNPLA6	Q8IY17	1366 aa		10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	FCHSD2	O94868	740 aa		10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	B4GALNT3	Q6L9W6	998 aa		10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	PLPPR3	Q6T4P5	718 aa		10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	ANKAR	Q7Z5J8	1434 aa		10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	TTC21A	Q8NDW8	1320 aa		10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	COL3A1	P02461	1466 aa	Predicted RBP	10.81	□□□□□ -0.68
PNKP-231	ENST00000640501	MAP2	P11137	1827 aa	Known RBP	10.8	□□□□□ -0.68
PNKP-231	ENST00000640501	PLEKHG3	A1L390	1219 aa		10.8	□□□□□ -0.68
PNKP-231	ENST00000640501	MS4A1	P11836	297 aa		10.8	□□□□□ -0.68
PNKP-231	ENST00000640501	AAMP	Q13685	434 aa		10.8	□□□□□ -0.68
PNKP-231	ENST00000640501	SLC26A8	Q96RN1	970 aa		10.8	□□□□□ -0.68
PNKP-231	ENST00000640501	TSHZ2	Q9NRE2	1034 aa		10.8	□□□□□ -0.68
PNKP-231	ENST00000640501	NRK	Q7Z2Y5	1582 aa		10.79	□□□□□ -0.68
PNKP-231	ENST00000640501	CANX	P27824	592 aa	Known RBP	10.79	□□□□□ -0.68
PNKP-231	ENST00000640501	IL16	Q14005	1332 aa		10.79	□□□□□ -0.68
PNKP-231	ENST00000640501	LMOD3	Q0VAK6	560 aa		10.78	□□□□□ -0.68
PNKP-231	ENST00000640501	PHF23	Q9BUL5	403 aa	Predicted RBP	10.78	□□□□□ -0.68
PNKP-231	ENST00000640501	USP6	P35125	1406 aa		10.77	□□□□□ -0.68
PNKP-231	ENST00000640501	NEUROD2	Q15784	382 aa		10.77	□□□□□ -0.69
PNKP-231	ENST00000640501	ACE	P12821	1306 aa		10.77	□□□□□ -0.69
PNKP-231	ENST00000640501	CHD2	O14647	1828 aa	Known RBP	10.77	□□□□□ -0.69
PNKP-231	ENST00000640501	PTPRU	Q92729	1446 aa		10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	FMN2	Q9NZ56	1722 aa		10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	PPM1G	O15355	546 aa	Predicted RBP	10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	PDE3A	Q14432	1141 aa		10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	DNAJC5	Q9H3Z4	198 aa		10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	POLK	Q9UBT6	870 aa		10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	TTC21B	Q7Z4L5	1316 aa		10.76	□□□□□ -0.69
PNKP-231	ENST00000640501	NALCN	Q8IZF0	1738 aa		10.75	□□□□□ -0.69
PNKP-231	ENST00000640501	TMPO	P42166	694 aa	Known RBP	10.75	□□□□□ -0.69
PNKP-231	ENST00000640501	NGDN	Q8NEJ9	315 aa	Known RBP	10.75	□□□□□ -0.69
PNKP-231	ENST00000640501	EXOC6	Q8TAG9	804 aa		10.75	□□□□□ -0.69
PNKP-231	ENST00000640501	LRRC7	Q96NW7	1537 aa		10.74	□□□□□ -0.69
PNKP-231	ENST00000640501	HAP1	P54257	671 aa	Predicted RBP	10.74	□□□□□ -0.69
PNKP-231	ENST00000640501	NME9	Q86XW9	330 aa		10.74	□□□□□ -0.69
PNKP-231	ENST00000640501	ZNF428	Q96B54	188 aa		10.74	□□□□□ -0.69
PNKP-231	ENST00000640501	PLEKHF1	Q96S99	279 aa		10.74	□□□□□ -0.69
PNKP-231	ENST00000640501	PRR36	Q9H6K5	1346 aa		10.74	□□□□□ -0.69
PNKP-231	ENST00000640501	RIPK4	P57078	832 aa		10.73	□□□□□ -0.69
PNKP-231	ENST00000640501	RRP7A	Q9Y3A4	280 aa	Known RBP	10.73	□□□□□ -0.69
PNKP-231	ENST00000640501	KIF24	Q5T7B8	1368 aa		10.73	□□□□□ -0.69
PNKP-231	ENST00000640501	OVOS2	A0A0J9YW53	1432 aa		10.73	□□□□□ -0.69
PNKP-231	ENST00000640501	OVOS2	Q6IE36	1432 aa		10.73	□□□□□ -0.69
PNKP-231	ENST00000640501	TCERG1	O14776	1098 aa	Known RBP	10.72	□□□□□ -0.69
PNKP-231	ENST00000640501	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.72	□□□□□ -0.69
PNKP-231	ENST00000640501	CRBN	Q96SW2	442 aa		10.72	□□□□□ -0.69
PNKP-231	ENST00000640501	NPHP4	O75161	1426 aa	Predicted RBP	10.72	□□□□□ -0.69
PNKP-231	ENST00000640501	PLIN1	O60240	522 aa		10.71	□□□□□ -0.69
PNKP-231	ENST00000640501	PRKAR2B	P31323	418 aa		10.71	□□□□□ -0.69
PNKP-231	ENST00000640501	NFE2L2	Q16236	605 aa		10.71	□□□□□ -0.69
PNKP-231	ENST00000640501	USP31	Q70CQ4	1352 aa		10.71	□□□□□ -0.69
PNKP-231	ENST00000640501	USP54	Q70EL1	1684 aa		10.71	□□□□□ -0.69
PNKP-231	ENST00000640501	RSPH6A	Q9H0K4	717 aa		10.71	□□□□□ -0.69
PNKP-231	ENST00000640501	KCNA6	P17658	529 aa		10.7	□□□□□ -0.7
PNKP-231	ENST00000640501	CHMP4B	Q9H444	224 aa	Known RBP	10.7	□□□□□ -0.7
PNKP-231	ENST00000640501	RBM19	Q9Y4C8	960 aa	Known RBP	10.7	□□□□□ -0.7
PNKP-231	ENST00000640501	SSH2	Q76I76	1423 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	ADGRL3	Q9HAR2	1447 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	SBNO1	A3KN83	1393 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	KIF16B	Q96L93	1317 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	IPO8	O15397	1037 aa	Known RBP	10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	IL13	P35225	146 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	RARS	P54136	660 aa	Known RBP	10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	GNAI1	P63096	354 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	EMILIN1	Q9Y6C2	1016 aa		10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	RGPD8	O14715	1765 aa	Predicted RBP	10.69	□□□□□ -0.7
PNKP-231	ENST00000640501	FLT4	P35916	1363 aa		10.68	□□□□□ -0.7
PNKP-231	ENST00000640501	FANCI	Q9NVI1	1328 aa		10.68	□□□□□ -0.7
PNKP-231	ENST00000640501	NUTM2F	A1L443	756 aa		10.68	□□□□□ -0.7
PNKP-231	ENST00000640501	NWD1	Q149M9	1564 aa		10.68	□□□□□ -0.7
PNKP-231	ENST00000640501	NCKAP5L	Q9HCH0	1330 aa		10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	ALDH1L2	Q3SY69	923 aa		10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	ZKSCAN2	Q63HK3	967 aa		10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	C14orf37	Q86TY3	774 aa		10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	FTSJ3	Q8IY81	847 aa	Known RBP	10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	PMFBP1	Q8TBY8	1022 aa		10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	FRAT1	Q92837	279 aa	Predicted RBP	10.67	□□□□□ -0.7
PNKP-231	ENST00000640501	IFT57	Q9NWB7	429 aa		10.67	□□□□□ -0.7

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