RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 CCDC61Q9Y6R9 512 aa25.42■■□□□ 1.66
PNKP-230ENST00000638016 UPF1Q92900 1129 aaKnown RBP eCLIP25.41■■□□□ 1.66
PNKP-230ENST00000638016 POLR3AO14802 1390 aaPredicted RBP25.41■■□□□ 1.66
PNKP-230ENST00000638016 GLI3P10071 1580 aa25.4■■□□□ 1.66
PNKP-230ENST00000638016 PPIP5K1Q6PFW1 1433 aa25.4■■□□□ 1.66
PNKP-230ENST00000638016 TONSLQ96HA7 1378 aa25.4■■□□□ 1.66
PNKP-230ENST00000638016 UNC5CLQ8IV45 518 aa25.39■■□□□ 1.66
PNKP-230ENST00000638016 FAM83GA6ND36 823 aa25.38■■□□□ 1.65
PNKP-230ENST00000638016 NUTM2GQ5VZR2 741 aa25.38■■□□□ 1.65
PNKP-230ENST00000638016 RALGAPBQ86X10 1494 aa25.37■■□□□ 1.65
PNKP-230ENST00000638016 PLEKHG3A1L390 1219 aa25.37■■□□□ 1.65
PNKP-230ENST00000638016 GJD4Q96KN9 370 aaPredicted RBP25.37■■□□□ 1.65
PNKP-230ENST00000638016 NWD2Q9ULI1 1742 aa25.36■■□□□ 1.65
PNKP-230ENST00000638016 PHRF1Q9P1Y6 1649 aaKnown RBP25.36■■□□□ 1.65
PNKP-230ENST00000638016 NRAPQ86VF7 1730 aa25.35■■□□□ 1.65
PNKP-230ENST00000638016 CABP1Q9NZU7 370 aa25.32■■□□□ 1.64
PNKP-230ENST00000638016 CARD11Q9BXL7 1154 aa25.31■■□□□ 1.64
PNKP-230ENST00000638016 COL14A1Q05707 1796 aaKnown RBP25.31■■□□□ 1.64
PNKP-230ENST00000638016 EVC2Q86UK5 1308 aa25.3■■□□□ 1.64
PNKP-230ENST00000638016 BTG4Q9NY30 223 aa25.29■■□□□ 1.64
PNKP-230ENST00000638016 BRWD3Q6RI45 1802 aa25.28■■□□□ 1.64
PNKP-230ENST00000638016 VPS72Q15906 364 aa25.28■■□□□ 1.64
PNKP-230ENST00000638016 CCDC9Q9Y3X0 531 aaKnown RBP25.28■■□□□ 1.64
PNKP-230ENST00000638016 NRKQ7Z2Y5 1582 aa25.27■■□□□ 1.64
PNKP-230ENST00000638016 CHRNA2Q15822 529 aa25.27■■□□□ 1.64
PNKP-230ENST00000638016 KIAA0232Q92628 1395 aa25.27■■□□□ 1.64
PNKP-230ENST00000638016 ZC3H6P61129 1189 aaKnown RBP25.26■■□□□ 1.63
PNKP-230ENST00000638016 ABTB2Q8N961 1025 aa25.26■■□□□ 1.63
PNKP-230ENST00000638016 USP6P35125 1406 aa25.26■■□□□ 1.63
PNKP-230ENST00000638016 EP400Q96L91 3159 aa25.26■■□□□ 1.63
PNKP-230ENST00000638016 PRDM11Q9NQV5 511 aa25.25■■□□□ 1.63
PNKP-230ENST00000638016 ATAD2Q6PL18 1390 aa25.24■■□□□ 1.63
PNKP-230ENST00000638016 AKAP12Q02952 1782 aa25.22■■□□□ 1.63
PNKP-230ENST00000638016 USP19O94966 1318 aa25.21■■□□□ 1.63
PNKP-230ENST00000638016 PIK3C2AO00443 1686 aa25.21■■□□□ 1.63
PNKP-230ENST00000638016 SSH2Q76I76 1423 aa25.2■■□□□ 1.63
PNKP-230ENST00000638016 SEPT12Q8IYM1 358 aa25.2■■□□□ 1.62
PNKP-230ENST00000638016 PCGF6Q9BYE7 350 aa25.2■■□□□ 1.62
PNKP-230ENST00000638016 SBNO2Q9Y2G9 1366 aa25.19■■□□□ 1.62
PNKP-230ENST00000638016 FAM98CQ17RN3 349 aaKnown RBP25.17■■□□□ 1.62
PNKP-230ENST00000638016 STRN4Q9NRL3 753 aa25.16■■□□□ 1.62
PNKP-230ENST00000638016 NLRP13Q86W25 1043 aa25.15■■□□□ 1.62
PNKP-230ENST00000638016 LMO7Q8WWI1 1683 aa25.15■■□□□ 1.62
PNKP-230ENST00000638016 CAMTA1Q9Y6Y1 1673 aa25.15■■□□□ 1.62
PNKP-230ENST00000638016 SPATA31A5Q5VU36 1347 aa25.14■■□□□ 1.62
PNKP-230ENST00000638016 SPATA31A7Q8IWB4 1347 aa25.14■■□□□ 1.62
PNKP-230ENST00000638016 CPSF1Q10570 1443 aaKnown RBP25.14■■□□□ 1.62
PNKP-230ENST00000638016 A0A0G2JS52 829 aa25.14■■□□□ 1.62
PNKP-230ENST00000638016 ONECUT3O60422 494 aaPredicted RBP25.14■■□□□ 1.62
PNKP-230ENST00000638016 GCP02774 474 aa25.14■■□□□ 1.62
PNKP-230ENST00000638016 NLRP6P59044 892 aa25.14■■□□□ 1.62
PNKP-230ENST00000638016 MYT1Q01538 1121 aa25.14■■□□□ 1.62
PNKP-230ENST00000638016 SLIT3O75094 1523 aa25.13■■□□□ 1.61
PNKP-230ENST00000638016 MON2Q7Z3U7 1717 aa25.13■■□□□ 1.61
PNKP-230ENST00000638016 BRD4O60885 1362 aaPredicted RBP25.13■■□□□ 1.61
PNKP-230ENST00000638016 TTC21BQ7Z4L5 1316 aa25.12■■□□□ 1.61
PNKP-230ENST00000638016 CD163L1Q9NR16 1453 aa25.12■■□□□ 1.61
PNKP-230ENST00000638016 CPDO75976 1380 aa25.11■■□□□ 1.61
PNKP-230ENST00000638016 ST20-MTHFSA0A0A6YYL1 179 aa25.11■■□□□ 1.61
PNKP-230ENST00000638016 ZBTB7CA1YPR0 619 aa25.11■■□□□ 1.61
PNKP-230ENST00000638016 TESK2Q96S53 571 aa25.11■■□□□ 1.61
PNKP-230ENST00000638016 KTN1Q86UP2 1357 aaKnown RBP25.1■■□□□ 1.61
PNKP-230ENST00000638016 THSD7AQ9UPZ6 1657 aa25.1■■□□□ 1.61
PNKP-230ENST00000638016 SPATA31A1Q5TZJ5 1347 aa25.09■■□□□ 1.61
PNKP-230ENST00000638016 KRT27Q7Z3Y8 459 aa25.08■■□□□ 1.61
PNKP-230ENST00000638016 TMC1Q8TDI8 760 aa25.08■■□□□ 1.61
PNKP-230ENST00000638016 SLC12A5Q9H2X9 1139 aa25.08■■□□□ 1.61
PNKP-230ENST00000638016 ZRANB1Q9UGI0 708 aa25.08■■□□□ 1.61
PNKP-230ENST00000638016 SOX12O15370 315 aa25.07■■□□□ 1.6
PNKP-230ENST00000638016 FAM182BQ5T319 152 aa25.07■■□□□ 1.6
PNKP-230ENST00000638016 LARP1Q6PKG0 1096 aaKnown RBP25.07■■□□□ 1.6
PNKP-230ENST00000638016 ZNF692Q9BU19 519 aaPredicted RBP25.07■■□□□ 1.6
PNKP-230ENST00000638016 USP35Q9P2H5 1018 aa25.07■■□□□ 1.6
PNKP-230ENST00000638016 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.05■■□□□ 1.6
PNKP-230ENST00000638016 COL5A2P05997 1499 aaPredicted RBP25.04■■□□□ 1.6
PNKP-230ENST00000638016 COL18A1P39060 1754 aa25.04■■□□□ 1.6
PNKP-230ENST00000638016 EVA1CP58658 441 aa25.04■■□□□ 1.6
PNKP-230ENST00000638016 USP47Q96K76 1375 aa25.04■■□□□ 1.6
PNKP-230ENST00000638016 TTC21AQ8NDW8 1320 aa25.03■■□□□ 1.6
PNKP-230ENST00000638016 NME9Q86XW9 330 aa25.02■■□□□ 1.6
PNKP-230ENST00000638016 A0A1W2PP64 1363 aa25.02■■□□□ 1.6
PNKP-230ENST00000638016 BLMP54132 1417 aaPredicted RBP25.02■■□□□ 1.6
PNKP-230ENST00000638016 NFAT5O94916 1531 aa25.01■■□□□ 1.59
PNKP-230ENST00000638016 RGPD5Q99666 1765 aa25■■□□□ 1.59
PNKP-230ENST00000638016 DEFB132Q7Z7B7 95 aa25■■□□□ 1.59
PNKP-230ENST00000638016 AATKQ6ZMQ8 1374 aa24.99■■□□□ 1.59
PNKP-230ENST00000638016 AXIN2Q9Y2T1 843 aa24.99■■□□□ 1.59
PNKP-230ENST00000638016 HDGFL2Q7Z4V5 671 aaPredicted RBP24.97■■□□□ 1.59
PNKP-230ENST00000638016 USP54Q70EL1 1684 aa24.97■■□□□ 1.59
PNKP-230ENST00000638016 CLSPNQ9HAW4 1339 aa24.96■■□□□ 1.59
PNKP-230ENST00000638016 ARHGEF25Q86VW2 580 aa24.96■■□□□ 1.59
PNKP-230ENST00000638016 CCDC125Q86Z20 511 aa24.96■■□□□ 1.59
PNKP-230ENST00000638016 EDC4Q6P2E9 1401 aaKnown RBP24.95■■□□□ 1.58
PNKP-230ENST00000638016 USP31Q70CQ4 1352 aa24.94■■□□□ 1.58
PNKP-230ENST00000638016 BARGINQ6ZT62 677 aa24.94■■□□□ 1.58
PNKP-230ENST00000638016 TCP11L2Q8N4U5 519 aa24.94■■□□□ 1.58
PNKP-230ENST00000638016 PUS7Q96PZ0 661 aaKnown RBP24.94■■□□□ 1.58
PNKP-230ENST00000638016 KCNH5Q8NCM2 988 aa24.93■■□□□ 1.58
PNKP-230ENST00000638016 CCER1Q8TC90 406 aaPredicted RBP24.93■■□□□ 1.58
PNKP-230ENST00000638016 CRB1P82279 1406 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms