RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CRYBG1Q9Y4K1 1723 aa28.35■■■□□ 2.13
PTCD3-220ENST00000627371 ZNF692Q9BU19 519 aaPredicted RBP28.34■■■□□ 2.13
PTCD3-220ENST00000627371 MARF1Q9Y4F3 1742 aaKnown RBP28.34■■■□□ 2.13
PTCD3-220ENST00000627371 PAK3O75914 559 aaPredicted RBP28.33■■■□□ 2.13
PTCD3-220ENST00000627371 SLC12A5Q9H2X9 1139 aa28.33■■■□□ 2.13
PTCD3-220ENST00000627371 SSH2Q76I76 1423 aa28.33■■■□□ 2.13
PTCD3-220ENST00000627371 LMOD2Q6P5Q4 547 aa28.32■■■□□ 2.12
PTCD3-220ENST00000627371 KTN1Q86UP2 1357 aaKnown RBP28.3■■■□□ 2.12
PTCD3-220ENST00000627371 NUTM2BA6NNL0 878 aaPredicted RBP28.3■■■□□ 2.12
PTCD3-220ENST00000627371 NUTM2EB1AL46 878 aaPredicted RBP28.3■■■□□ 2.12
PTCD3-220ENST00000627371 NUTM2AQ8IVF1 878 aaPredicted RBP28.3■■■□□ 2.12
PTCD3-220ENST00000627371 PIK3C2AO00443 1686 aa28.29■■■□□ 2.12
PTCD3-220ENST00000627371 A0A1W2PP64 1363 aa28.29■■■□□ 2.12
PTCD3-220ENST00000627371 HDGFL2Q7Z4V5 671 aaPredicted RBP28.28■■■□□ 2.12
PTCD3-220ENST00000627371 TERF2IPQ9NYB0 399 aa28.28■■■□□ 2.12
PTCD3-220ENST00000627371 PHRF1Q9P1Y6 1649 aaKnown RBP28.28■■■□□ 2.12
PTCD3-220ENST00000627371 ANKRD36BQ8N2N9 1353 aa28.25■■■□□ 2.11
PTCD3-220ENST00000627371 ZEB1P37275 1124 aaPredicted RBP28.25■■■□□ 2.11
PTCD3-220ENST00000627371 MEX3CQ5U5Q3 659 aaKnown RBP28.24■■■□□ 2.11
PTCD3-220ENST00000627371 EDC4Q6P2E9 1401 aaKnown RBP28.24■■■□□ 2.11
PTCD3-220ENST00000627371 TTC21BQ7Z4L5 1316 aa28.23■■■□□ 2.11
PTCD3-220ENST00000627371 ABTB2Q8N961 1025 aa28.23■■■□□ 2.11
PTCD3-220ENST00000627371 TTC21AQ8NDW8 1320 aa28.22■■■□□ 2.11
PTCD3-220ENST00000627371 CABLES1Q8TDN4 633 aa28.22■■■□□ 2.11
PTCD3-220ENST00000627371 USP54Q70EL1 1684 aa28.22■■■□□ 2.11
PTCD3-220ENST00000627371 C11orf95C9JLR9 678 aaPredicted RBP28.21■■■□□ 2.11
PTCD3-220ENST00000627371 ADAMTS2O95450 1211 aa28.2■■■□□ 2.1
PTCD3-220ENST00000627371 NUTM2GQ5VZR2 741 aa28.19■■■□□ 2.1
PTCD3-220ENST00000627371 POLR3GLQ9BT43 218 aa28.19■■■□□ 2.1
PTCD3-220ENST00000627371 PHF23Q9BUL5 403 aaPredicted RBP28.19■■■□□ 2.1
PTCD3-220ENST00000627371 PLEKHG5O94827 1062 aa28.18■■■□□ 2.1
PTCD3-220ENST00000627371 HAP1P54257 671 aaPredicted RBP28.18■■■□□ 2.1
PTCD3-220ENST00000627371 USP19O94966 1318 aa28.18■■■□□ 2.1
PTCD3-220ENST00000627371 NLRP13Q86W25 1043 aa28.16■■■□□ 2.1
PTCD3-220ENST00000627371 SLIT3O75094 1523 aa28.16■■■□□ 2.1
PTCD3-220ENST00000627371 KIF7Q2M1P5 1343 aa28.16■■■□□ 2.1
PTCD3-220ENST00000627371 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.15■■■□□ 2.1
PTCD3-220ENST00000627371 KIF20BQ96Q89 1820 aa28.14■■■□□ 2.1
PTCD3-220ENST00000627371 C8orf37Q96NL8 207 aa28.14■■■□□ 2.1
PTCD3-220ENST00000627371 PLCH1Q4KWH8 1693 aa28.13■■■□□ 2.09
PTCD3-220ENST00000627371 NLRP6P59044 892 aa28.13■■■□□ 2.09
PTCD3-220ENST00000627371 USP31Q70CQ4 1352 aa28.11■■■□□ 2.09
PTCD3-220ENST00000627371 NWD2Q9ULI1 1742 aa28.11■■■□□ 2.09
PTCD3-220ENST00000627371 COL14A1Q05707 1796 aaKnown RBP28.11■■■□□ 2.09
PTCD3-220ENST00000627371 NME9Q86XW9 330 aa28.1■■■□□ 2.09
PTCD3-220ENST00000627371 NGLY1Q96IV0 654 aa28.1■■■□□ 2.09
PTCD3-220ENST00000627371 RGS17Q9UGC6 210 aaPredicted RBP28.1■■■□□ 2.09
PTCD3-220ENST00000627371 AFF2P51816 1311 aa28.1■■■□□ 2.09
PTCD3-220ENST00000627371 CCDC7Q96M83 1385 aa28.09■■■□□ 2.09
PTCD3-220ENST00000627371 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.09■■■□□ 2.09
PTCD3-220ENST00000627371 OVOS2A0A0J9YW53 1432 aa28.08■■■□□ 2.09
PTCD3-220ENST00000627371 OVOS2Q6IE36 1432 aa28.08■■■□□ 2.09
PTCD3-220ENST00000627371 NSD3Q9BZ95 1437 aa28.08■■■□□ 2.09
PTCD3-220ENST00000627371 CARD14Q9BXL6 1004 aa28.07■■■□□ 2.08
PTCD3-220ENST00000627371 SLIT2O94813 1529 aa28.07■■■□□ 2.08
PTCD3-220ENST00000627371 GCP02774 474 aa28.06■■■□□ 2.08
PTCD3-220ENST00000627371 FNBP4Q8N3X1 1017 aaPredicted RBP28.06■■■□□ 2.08
PTCD3-220ENST00000627371 WASHC2AQ641Q2 1341 aa28.06■■■□□ 2.08
PTCD3-220ENST00000627371 ZNF772Q68DY9 489 aaPredicted RBP28.05■■■□□ 2.08
PTCD3-220ENST00000627371 ZRANB1Q9UGI0 708 aa28.05■■■□□ 2.08
PTCD3-220ENST00000627371 NFAT5O94916 1531 aa28.04■■■□□ 2.08
PTCD3-220ENST00000627371 CPDO75976 1380 aa28.04■■■□□ 2.08
PTCD3-220ENST00000627371 KIAA0232Q92628 1395 aa28.04■■■□□ 2.08
PTCD3-220ENST00000627371 NRAPQ86VF7 1730 aa28.04■■■□□ 2.08
PTCD3-220ENST00000627371 FAM83GA6ND36 823 aa28.02■■■□□ 2.08
PTCD3-220ENST00000627371 ZC3H6P61129 1189 aaKnown RBP28.02■■■□□ 2.08
PTCD3-220ENST00000627371 KCNH5Q8NCM2 988 aa28.02■■■□□ 2.08
PTCD3-220ENST00000627371 PANK3Q9H999 370 aa28.02■■■□□ 2.08
PTCD3-220ENST00000627371 BCL9LQ86UU0 1499 aa28.02■■■□□ 2.08
PTCD3-220ENST00000627371 LMO7Q8WWI1 1683 aa28.01■■■□□ 2.07
PTCD3-220ENST00000627371 PRDM11Q9NQV5 511 aa28.01■■■□□ 2.07
PTCD3-220ENST00000627371 LTN1O94822 1766 aa28.01■■■□□ 2.07
PTCD3-220ENST00000627371 ANKRD26Q9UPS8 1709 aa28.01■■■□□ 2.07
PTCD3-220ENST00000627371 USP21Q9UK80 565 aa28■■■□□ 2.07
PTCD3-220ENST00000627371 FYB1O15117 783 aa27.99■■■□□ 2.07
PTCD3-220ENST00000627371 COL18A1P39060 1754 aa27.98■■■□□ 2.07
PTCD3-220ENST00000627371 POTEAQ6S8J7 498 aa27.97■■■□□ 2.07
PTCD3-220ENST00000627371 COG3Q96JB2 828 aa27.97■■■□□ 2.07
PTCD3-220ENST00000627371 CGNL1Q0VF96 1302 aa27.96■■■□□ 2.07
PTCD3-220ENST00000627371 ATRNO75882 1429 aa27.95■■■□□ 2.07
PTCD3-220ENST00000627371 SOX12O15370 315 aa27.95■■■□□ 2.06
PTCD3-220ENST00000627371 CHRNA2Q15822 529 aa27.95■■■□□ 2.06
PTCD3-220ENST00000627371 UNC5CLQ8IV45 518 aa27.95■■■□□ 2.06
PTCD3-220ENST00000627371 GGNBP2Q9H3C7 697 aa27.95■■■□□ 2.06
PTCD3-220ENST00000627371 RGPD5Q99666 1765 aa27.94■■■□□ 2.06
PTCD3-220ENST00000627371 ABCC6O95255 1503 aa27.93■■■□□ 2.06
PTCD3-220ENST00000627371 BTG4Q9NY30 223 aa27.93■■■□□ 2.06
PTCD3-220ENST00000627371 CAMTA1Q9Y6Y1 1673 aa27.92■■■□□ 2.06
PTCD3-220ENST00000627371 ARHGEF25Q86VW2 580 aa27.92■■■□□ 2.06
PTCD3-220ENST00000627371 TRPC5Q9UL62 973 aaPredicted RBP27.92■■■□□ 2.06
PTCD3-220ENST00000627371 AATKQ6ZMQ8 1374 aa27.91■■■□□ 2.06
PTCD3-220ENST00000627371 QTRT2Q9H974 415 aaKnown RBP27.91■■■□□ 2.06
PTCD3-220ENST00000627371 NSD2O96028 1365 aa27.88■■■□□ 2.05
PTCD3-220ENST00000627371 ZBTB7CA1YPR0 619 aa27.88■■■□□ 2.05
PTCD3-220ENST00000627371 KNSTRNQ9Y448 316 aa27.88■■■□□ 2.05
PTCD3-220ENST00000627371 COL5A2P05997 1499 aaPredicted RBP27.86■■■□□ 2.05
PTCD3-220ENST00000627371 GLI3P10071 1580 aa27.86■■■□□ 2.05
PTCD3-220ENST00000627371 VPS72Q15906 364 aa27.85■■■□□ 2.05
PTCD3-220ENST00000627371 MAP2P11137 1827 aaKnown RBP27.85■■■□□ 2.05
PTCD3-220ENST00000627371 PER1O15534 1290 aaPredicted RBP27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms