RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 USP6P35125 1406 aa28.48■■■□□ 2.15
SPAST-204ENST00000621856 PMFBP1Q8TBY8 1022 aa28.47■■■□□ 2.15
SPAST-204ENST00000621856 RBM33Q96EV2 1170 aaKnown RBP28.46■■■□□ 2.15
SPAST-204ENST00000621856 COG3Q96JB2 828 aa28.46■■■□□ 2.15
SPAST-204ENST00000621856 ADGRL3Q9HAR2 1447 aa28.46■■■□□ 2.15
SPAST-204ENST00000621856 TTC21BQ7Z4L5 1316 aa28.46■■■□□ 2.15
SPAST-204ENST00000621856 PDE3BQ13370 1112 aa28.46■■■□□ 2.15
SPAST-204ENST00000621856 NGDNQ8NEJ9 315 aaKnown RBP28.45■■■□□ 2.14
SPAST-204ENST00000621856 ZRANB1Q9UGI0 708 aa28.45■■■□□ 2.14
SPAST-204ENST00000621856 C14orf37Q86TY3 774 aa28.43■■■□□ 2.14
SPAST-204ENST00000621856 HSPA2P54652 639 aa28.43■■■□□ 2.14
SPAST-204ENST00000621856 MAP2P11137 1827 aaKnown RBP28.42■■■□□ 2.14
SPAST-204ENST00000621856 COL3A1P02461 1466 aaPredicted RBP28.41■■■□□ 2.14
SPAST-204ENST00000621856 FKBP8Q14318 412 aa28.41■■■□□ 2.14
SPAST-204ENST00000621856 PROSER2Q86WR7 435 aaPredicted RBP28.39■■■□□ 2.14
SPAST-204ENST00000621856 APAF1O14727 1248 aa28.38■■■□□ 2.13
SPAST-204ENST00000621856 POLKQ9UBT6 870 aa28.38■■■□□ 2.13
SPAST-204ENST00000621856 TTC21AQ8NDW8 1320 aa28.37■■■□□ 2.13
SPAST-204ENST00000621856 SSH2Q76I76 1423 aa28.37■■■□□ 2.13
SPAST-204ENST00000621856 U2AF1L5P0DN76 240 aaPredicted RBP28.37■■■□□ 2.13
SPAST-204ENST00000621856 U2AF1Q01081 240 aaKnown RBP eCLIP28.37■■■□□ 2.13
SPAST-204ENST00000621856 AATKQ6ZMQ8 1374 aa28.37■■■□□ 2.13
SPAST-204ENST00000621856 PPM1GO15355 546 aaPredicted RBP28.36■■■□□ 2.13
SPAST-204ENST00000621856 FBLN1P23142 703 aa28.36■■■□□ 2.13
SPAST-204ENST00000621856 LMTK3Q96Q04 1460 aa28.35■■■□□ 2.13
SPAST-204ENST00000621856 PNPLA6Q8IY17 1366 aa28.35■■■□□ 2.13
SPAST-204ENST00000621856 U2SURPO15042 1029 aaKnown RBP28.35■■■□□ 2.13
SPAST-204ENST00000621856 RUNDC1Q96C34 613 aa28.35■■■□□ 2.13
SPAST-204ENST00000621856 DIAPH1O60610 1272 aaKnown RBP28.34■■■□□ 2.13
SPAST-204ENST00000621856 OVOS2A0A0J9YW53 1432 aa28.34■■■□□ 2.13
SPAST-204ENST00000621856 OVOS2Q6IE36 1432 aa28.34■■■□□ 2.13
SPAST-204ENST00000621856 CDCA7LQ96GN5 454 aa28.33■■■□□ 2.13
SPAST-204ENST00000621856 NGEFQ8N5V2 710 aa28.32■■■□□ 2.12
SPAST-204ENST00000621856 PHF8Q9UPP1 1060 aa28.32■■■□□ 2.12
SPAST-204ENST00000621856 EMILIN1Q9Y6C2 1016 aa28.31■■■□□ 2.12
SPAST-204ENST00000621856 CDK12Q9NYV4 1490 aaPredicted RBP28.3■■■□□ 2.12
SPAST-204ENST00000621856 ZNF521Q96K83 1311 aa28.29■■■□□ 2.12
SPAST-204ENST00000621856 STRCP1A6NGW2 1772 aa28.29■■■□□ 2.12
SPAST-204ENST00000621856 RRS1Q15050 365 aaKnown RBP28.27■■■□□ 2.12
SPAST-204ENST00000621856 ESCO1Q5FWF5 840 aa28.27■■■□□ 2.12
SPAST-204ENST00000621856 IQSEC2Q5JU85 1478 aa28.27■■■□□ 2.12
SPAST-204ENST00000621856 PIK3C2AO00443 1686 aa28.27■■■□□ 2.12
SPAST-204ENST00000621856 GOLGA2Q08379 1002 aa28.26■■■□□ 2.12
SPAST-204ENST00000621856 STRCQ7RTU9 1775 aa28.26■■■□□ 2.11
SPAST-204ENST00000621856 TCP11L2Q8N4U5 519 aa28.25■■■□□ 2.11
SPAST-204ENST00000621856 USP31Q70CQ4 1352 aa28.24■■■□□ 2.11
SPAST-204ENST00000621856 IRX6P78412 446 aaPredicted RBP28.23■■■□□ 2.11
SPAST-204ENST00000621856 C19orf44Q9H6X5 657 aa28.23■■■□□ 2.11
SPAST-204ENST00000621856 TMEM94Q12767 1356 aa28.22■■■□□ 2.11
SPAST-204ENST00000621856 PAK3O75914 559 aaPredicted RBP28.21■■■□□ 2.11
SPAST-204ENST00000621856 NEUROD2Q15784 382 aa28.21■■■□□ 2.11
SPAST-204ENST00000621856 PNNQ9H307 717 aaKnown RBP28.21■■■□□ 2.11
SPAST-204ENST00000621856 RRP7AQ9Y3A4 280 aaKnown RBP28.21■■■□□ 2.11
SPAST-204ENST00000621856 SOX12O15370 315 aa28.2■■■□□ 2.1
SPAST-204ENST00000621856 MAPK8IP3Q9UPT6 1336 aa28.19■■■□□ 2.1
SPAST-204ENST00000621856 NLRP6P59044 892 aa28.19■■■□□ 2.1
SPAST-204ENST00000621856 RCAN3Q9UKA8 241 aa28.19■■■□□ 2.1
SPAST-204ENST00000621856 NCOA3Q9Y6Q9 1424 aa28.19■■■□□ 2.1
SPAST-204ENST00000621856 PSME1Q06323 249 aa28.18■■■□□ 2.1
SPAST-204ENST00000621856 USP54Q70EL1 1684 aa28.18■■■□□ 2.1
SPAST-204ENST00000621856 IL13P35225 146 aa28.18■■■□□ 2.1
SPAST-204ENST00000621856 PLEKHF1Q96S99 279 aa28.18■■■□□ 2.1
SPAST-204ENST00000621856 SLFN5Q08AF3 891 aa28.17■■■□□ 2.1
SPAST-204ENST00000621856 WWC1Q8IX03 1113 aa28.17■■■□□ 2.1
SPAST-204ENST00000621856 ABTB2Q8N961 1025 aa28.17■■■□□ 2.1
SPAST-204ENST00000621856 ORAI2Q96SN7 254 aa28.17■■■□□ 2.1
SPAST-204ENST00000621856 ATF3P18847 181 aa28.16■■■□□ 2.1
SPAST-204ENST00000621856 RNF123Q5XPI4 1314 aa28.16■■■□□ 2.1
SPAST-204ENST00000621856 FCHSD2O94868 740 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 DUSP27Q5VZP5 1158 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 MARF1Q9Y4F3 1742 aaKnown RBP28.15■■■□□ 2.1
SPAST-204ENST00000621856 C1orf167Q5SNV9 1468 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 LRRC7Q96NW7 1537 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 KIF1AQ12756 1690 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 NUTM2GQ5VZR2 741 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 PEAK1Q9H792 1746 aa28.15■■■□□ 2.1
SPAST-204ENST00000621856 E9PSI1 815 aa28.14■■■□□ 2.1
SPAST-204ENST00000621856 NCBP3Q53F19 620 aaKnown RBP28.14■■■□□ 2.1
SPAST-204ENST00000621856 DCCP43146 1447 aa28.13■■■□□ 2.09
SPAST-204ENST00000621856 CCDC27Q2M243 656 aa28.12■■■□□ 2.09
SPAST-204ENST00000621856 NEFMP07197 916 aa28.12■■■□□ 2.09
SPAST-204ENST00000621856 RSPH6AQ9H0K4 717 aa28.12■■■□□ 2.09
SPAST-204ENST00000621856 PHF23Q9BUL5 403 aaPredicted RBP28.11■■■□□ 2.09
SPAST-204ENST00000621856 MAP3K19Q56UN5 1328 aa28.11■■■□□ 2.09
SPAST-204ENST00000621856 HMOX1P09601 288 aa28.1■■■□□ 2.09
SPAST-204ENST00000621856 PRKAR2BP31323 418 aa28.1■■■□□ 2.09
SPAST-204ENST00000621856 ERICH6BQ5W0A0 696 aa28.1■■■□□ 2.09
SPAST-204ENST00000621856 TRMT2AQ8IZ69 625 aaKnown RBP28.1■■■□□ 2.09
SPAST-204ENST00000621856 DMRT2Q9Y5R5 561 aa28.1■■■□□ 2.09
SPAST-204ENST00000621856 FOXO3O43524 673 aa28.09■■■□□ 2.09
SPAST-204ENST00000621856 TMPOP42166 694 aaKnown RBP28.09■■■□□ 2.09
SPAST-204ENST00000621856 SPINK5Q9NQ38 1064 aaPredicted RBP28.09■■■□□ 2.09
SPAST-204ENST00000621856 WDR63Q8IWG1 891 aa28.09■■■□□ 2.09
SPAST-204ENST00000621856 SBNO1A3KN83 1393 aa28.09■■■□□ 2.09
SPAST-204ENST00000621856 MST1RQ04912 1400 aa28.09■■■□□ 2.09
SPAST-204ENST00000621856 MSH6P52701 1360 aa28.08■■■□□ 2.09
SPAST-204ENST00000621856 EIF4A2Q14240 407 aaKnown RBP28.08■■■□□ 2.09
SPAST-204ENST00000621856 FLT4P35916 1363 aa28.07■■■□□ 2.08
SPAST-204ENST00000621856 XIRP1Q702N8 1843 aaKnown RBP28.07■■■□□ 2.08
SPAST-204ENST00000621856 AMPHP49418 695 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms