RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 SRPK2P78362 688 aaKnown RBP24.63■■□□□ 1.53
HMGN3-203ENST00000620514 NBPF8Q3BBV2 869 aa24.63■■□□□ 1.53
HMGN3-203ENST00000620514 CABP2Q9NPB3 220 aa24.63■■□□□ 1.53
HMGN3-203ENST00000620514 POLR3AO14802 1390 aaPredicted RBP24.63■■□□□ 1.53
HMGN3-203ENST00000620514 PLEKHG3A1L390 1219 aa24.62■■□□□ 1.53
HMGN3-203ENST00000620514 ROCK2O75116 1388 aaKnown RBP24.62■■□□□ 1.53
HMGN3-203ENST00000620514 RALGAPBQ86X10 1494 aa24.62■■□□□ 1.53
HMGN3-203ENST00000620514 GLI3P10071 1580 aa24.61■■□□□ 1.53
HMGN3-203ENST00000620514 CRYBG1Q9Y4K1 1723 aa24.6■■□□□ 1.53
HMGN3-203ENST00000620514 NWD2Q9ULI1 1742 aa24.59■■□□□ 1.53
HMGN3-203ENST00000620514 NUTM2GQ5VZR2 741 aa24.58■■□□□ 1.53
HMGN3-203ENST00000620514 PPIP5K1Q6PFW1 1433 aa24.58■■□□□ 1.53
HMGN3-203ENST00000620514 VPS72Q15906 364 aa24.57■■□□□ 1.52
HMGN3-203ENST00000620514 ATAD2Q6PL18 1390 aa24.56■■□□□ 1.52
HMGN3-203ENST00000620514 CCDC9Q9Y3X0 531 aaKnown RBP24.55■■□□□ 1.52
HMGN3-203ENST00000620514 BTG4Q9NY30 223 aa24.54■■□□□ 1.52
HMGN3-203ENST00000620514 TONSLQ96HA7 1378 aa24.54■■□□□ 1.52
HMGN3-203ENST00000620514 NRAPQ86VF7 1730 aa24.53■■□□□ 1.52
HMGN3-203ENST00000620514 COL14A1Q05707 1796 aaKnown RBP24.53■■□□□ 1.52
HMGN3-203ENST00000620514 CABP1Q9NZU7 370 aa24.52■■□□□ 1.52
HMGN3-203ENST00000620514 EVC2Q86UK5 1308 aa24.52■■□□□ 1.52
HMGN3-203ENST00000620514 PHRF1Q9P1Y6 1649 aaKnown RBP24.51■■□□□ 1.51
HMGN3-203ENST00000620514 PRDM11Q9NQV5 511 aa24.51■■□□□ 1.51
HMGN3-203ENST00000620514 KIAA0232Q92628 1395 aa24.5■■□□□ 1.51
HMGN3-203ENST00000620514 SEPT12Q8IYM1 358 aa24.49■■□□□ 1.51
HMGN3-203ENST00000620514 ABTB2Q8N961 1025 aa24.49■■□□□ 1.51
HMGN3-203ENST00000620514 ZC3H6P61129 1189 aaKnown RBP24.48■■□□□ 1.51
HMGN3-203ENST00000620514 CHRNA2Q15822 529 aa24.48■■□□□ 1.51
HMGN3-203ENST00000620514 CARD11Q9BXL7 1154 aa24.48■■□□□ 1.51
HMGN3-203ENST00000620514 BRWD3Q6RI45 1802 aa24.47■■□□□ 1.51
HMGN3-203ENST00000620514 ONECUT3O60422 494 aaPredicted RBP24.46■■□□□ 1.51
HMGN3-203ENST00000620514 USP6P35125 1406 aa24.45■■□□□ 1.51
HMGN3-203ENST00000620514 USP19O94966 1318 aa24.44■■□□□ 1.5
HMGN3-203ENST00000620514 NRKQ7Z2Y5 1582 aa24.44■■□□□ 1.5
HMGN3-203ENST00000620514 FAM98CQ17RN3 349 aaKnown RBP24.43■■□□□ 1.5
HMGN3-203ENST00000620514 BRD4O60885 1362 aaPredicted RBP24.42■■□□□ 1.5
HMGN3-203ENST00000620514 SPATA31A5Q5VU36 1347 aa24.41■■□□□ 1.5
HMGN3-203ENST00000620514 SPATA31A7Q8IWB4 1347 aa24.41■■□□□ 1.5
HMGN3-203ENST00000620514 NLRP13Q86W25 1043 aa24.41■■□□□ 1.5
HMGN3-203ENST00000620514 SSH2Q76I76 1423 aa24.41■■□□□ 1.5
HMGN3-203ENST00000620514 A0A0G2JS52 829 aa24.4■■□□□ 1.5
HMGN3-203ENST00000620514 MYT1Q01538 1121 aa24.4■■□□□ 1.5
HMGN3-203ENST00000620514 GCP02774 474 aa24.39■■□□□ 1.49
HMGN3-203ENST00000620514 STRN4Q9NRL3 753 aa24.39■■□□□ 1.49
HMGN3-203ENST00000620514 SBNO2Q9Y2G9 1366 aa24.39■■□□□ 1.49
HMGN3-203ENST00000620514 KRT27Q7Z3Y8 459 aa24.38■■□□□ 1.49
HMGN3-203ENST00000620514 EP400Q96L91 3159 aa24.38■■□□□ 1.49
HMGN3-203ENST00000620514 NLRP6P59044 892 aa24.37■■□□□ 1.49
HMGN3-203ENST00000620514 CPDO75976 1380 aa24.37■■□□□ 1.49
HMGN3-203ENST00000620514 PIK3C2AO00443 1686 aa24.36■■□□□ 1.49
HMGN3-203ENST00000620514 CAMTA1Q9Y6Y1 1673 aa24.36■■□□□ 1.49
HMGN3-203ENST00000620514 SPATA31A1Q5TZJ5 1347 aa24.35■■□□□ 1.49
HMGN3-203ENST00000620514 AKAP12Q02952 1782 aa24.35■■□□□ 1.49
HMGN3-203ENST00000620514 CCDC125Q86Z20 511 aa24.35■■□□□ 1.49
HMGN3-203ENST00000620514 ZNF692Q9BU19 519 aaPredicted RBP24.35■■□□□ 1.49
HMGN3-203ENST00000620514 TTC21BQ7Z4L5 1316 aa24.35■■□□□ 1.49
HMGN3-203ENST00000620514 LMO7Q8WWI1 1683 aa24.34■■□□□ 1.49
HMGN3-203ENST00000620514 SLIT3O75094 1523 aa24.33■■□□□ 1.49
HMGN3-203ENST00000620514 CPSF1Q10570 1443 aaKnown RBP24.33■■□□□ 1.49
HMGN3-203ENST00000620514 THSD7AQ9UPZ6 1657 aa24.32■■□□□ 1.48
HMGN3-203ENST00000620514 ZBTB7CA1YPR0 619 aa24.32■■□□□ 1.48
HMGN3-203ENST00000620514 EVA1CP58658 441 aa24.32■■□□□ 1.48
HMGN3-203ENST00000620514 BLMP54132 1417 aaPredicted RBP24.32■■□□□ 1.48
HMGN3-203ENST00000620514 LARP1Q6PKG0 1096 aaKnown RBP24.31■■□□□ 1.48
HMGN3-203ENST00000620514 USP35Q9P2H5 1018 aa24.31■■□□□ 1.48
HMGN3-203ENST00000620514 KTN1Q86UP2 1357 aaKnown RBP24.3■■□□□ 1.48
HMGN3-203ENST00000620514 FAM182BQ5T319 152 aa24.29■■□□□ 1.48
HMGN3-203ENST00000620514 TMC1Q8TDI8 760 aa24.28■■□□□ 1.48
HMGN3-203ENST00000620514 TTC21AQ8NDW8 1320 aa24.28■■□□□ 1.48
HMGN3-203ENST00000620514 CD163L1Q9NR16 1453 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 ST20-MTHFSA0A0A6YYL1 179 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 DEFB132Q7Z7B7 95 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 TESK2Q96S53 571 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 PCGF6Q9BYE7 350 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 SLC12A5Q9H2X9 1139 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 MON2Q7Z3U7 1717 aa24.27■■□□□ 1.48
HMGN3-203ENST00000620514 COL5A2P05997 1499 aaPredicted RBP24.26■■□□□ 1.47
HMGN3-203ENST00000620514 SOX12O15370 315 aa24.25■■□□□ 1.47
HMGN3-203ENST00000620514 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.25■■□□□ 1.47
HMGN3-203ENST00000620514 ZRANB1Q9UGI0 708 aa24.25■■□□□ 1.47
HMGN3-203ENST00000620514 AATKQ6ZMQ8 1374 aa24.25■■□□□ 1.47
HMGN3-203ENST00000620514 SF3B2Q13435 895 aaKnown RBP24.24■■□□□ 1.47
HMGN3-203ENST00000620514 BARGINQ6ZT62 677 aa24.23■■□□□ 1.47
HMGN3-203ENST00000620514 COL18A1P39060 1754 aa24.22■■□□□ 1.47
HMGN3-203ENST00000620514 TCP11L2Q8N4U5 519 aa24.22■■□□□ 1.47
HMGN3-203ENST00000620514 HDGFL2Q7Z4V5 671 aaPredicted RBP24.21■■□□□ 1.47
HMGN3-203ENST00000620514 ARHGEF25Q86VW2 580 aa24.21■■□□□ 1.47
HMGN3-203ENST00000620514 KCNH5Q8NCM2 988 aa24.21■■□□□ 1.47
HMGN3-203ENST00000620514 PUS7Q96PZ0 661 aaKnown RBP24.21■■□□□ 1.47
HMGN3-203ENST00000620514 AXIN2Q9Y2T1 843 aa24.21■■□□□ 1.47
HMGN3-203ENST00000620514 NME9Q86XW9 330 aa24.2■■□□□ 1.46
HMGN3-203ENST00000620514 NFAT5O94916 1531 aa24.2■■□□□ 1.46
HMGN3-203ENST00000620514 CRB1P82279 1406 aa24.18■■□□□ 1.46
HMGN3-203ENST00000620514 A0A1W2PP64 1363 aa24.18■■□□□ 1.46
HMGN3-203ENST00000620514 USP47Q96K76 1375 aa24.18■■□□□ 1.46
HMGN3-203ENST00000620514 USP31Q70CQ4 1352 aa24.17■■□□□ 1.46
HMGN3-203ENST00000620514 TERF2IPQ9NYB0 399 aa24.17■■□□□ 1.46
HMGN3-203ENST00000620514 THRAP3Q9Y2W1 955 aaKnown RBP24.17■■□□□ 1.46
HMGN3-203ENST00000620514 EDC4Q6P2E9 1401 aaKnown RBP24.16■■□□□ 1.46
HMGN3-203ENST00000620514 CLSPNQ9HAW4 1339 aa24.14■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms