RNA–Protein interactions for RNA: ENST00000619438.4

SGMS1-210, Transcript of sphingomyelin synthase 1, humanhuman

TSL 5 BASIC

Gene SGMS1, Length 1,680 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGMS1-210ENST00000619438 PLEKHG3A1L390 1219 aa29.66■■■□□ 2.34
SGMS1-210ENST00000619438 TNS3Q68CZ2 1445 aa29.65■■■□□ 2.34
SGMS1-210ENST00000619438 CABP1Q9NZU7 370 aa29.63■■■□□ 2.33
SGMS1-210ENST00000619438 MARF1Q9Y4F3 1742 aaKnown RBP29.63■■■□□ 2.33
SGMS1-210ENST00000619438 ARHGEF10O15013 1369 aa29.62■■■□□ 2.33
SGMS1-210ENST00000619438 PPIP5K1Q6PFW1 1433 aa29.62■■■□□ 2.33
SGMS1-210ENST00000619438 CABLES1Q8TDN4 633 aa29.61■■■□□ 2.33
SGMS1-210ENST00000619438 TRPM3Q9HCF6 1732 aaPredicted RBP29.61■■■□□ 2.33
SGMS1-210ENST00000619438 ST20-MTHFSA0A0A6YYL1 179 aa29.6■■■□□ 2.33
SGMS1-210ENST00000619438 CCDC7Q96M83 1385 aa29.6■■■□□ 2.33
SGMS1-210ENST00000619438 TOPAZ1Q8N9V7 1692 aa29.59■■■□□ 2.33
SGMS1-210ENST00000619438 POLR3AO14802 1390 aaPredicted RBP29.57■■■□□ 2.32
SGMS1-210ENST00000619438 SBNO2Q9Y2G9 1366 aa29.57■■■□□ 2.32
SGMS1-210ENST00000619438 SLC24A1O60721 1099 aa29.55■■■□□ 2.32
SGMS1-210ENST00000619438 ALS2Q96Q42 1657 aa29.54■■■□□ 2.32
SGMS1-210ENST00000619438 USP21Q9UK80 565 aa29.53■■■□□ 2.32
SGMS1-210ENST00000619438 ABCA3Q99758 1704 aa29.53■■■□□ 2.32
SGMS1-210ENST00000619438 ATAD2Q6PL18 1390 aa29.53■■■□□ 2.32
SGMS1-210ENST00000619438 QTRT2Q9H974 415 aaKnown RBP29.52■■■□□ 2.32
SGMS1-210ENST00000619438 ABTB2Q8N961 1025 aa29.51■■■□□ 2.31
SGMS1-210ENST00000619438 RXRBP28702 533 aa29.5■■■□□ 2.31
SGMS1-210ENST00000619438 NUTM2GQ5VZR2 741 aa29.5■■■□□ 2.31
SGMS1-210ENST00000619438 TMC1Q8TDI8 760 aa29.5■■■□□ 2.31
SGMS1-210ENST00000619438 USP47Q96K76 1375 aa29.5■■■□□ 2.31
SGMS1-210ENST00000619438 C11orf95C9JLR9 678 aaPredicted RBP29.5■■■□□ 2.31
SGMS1-210ENST00000619438 FNBP4Q8N3X1 1017 aaPredicted RBP29.5■■■□□ 2.31
SGMS1-210ENST00000619438 TESK2Q96S53 571 aa29.49■■■□□ 2.31
SGMS1-210ENST00000619438 ZNF692Q9BU19 519 aaPredicted RBP29.49■■■□□ 2.31
SGMS1-210ENST00000619438 KIF7Q2M1P5 1343 aa29.45■■■□□ 2.3
SGMS1-210ENST00000619438 TMF1P82094 1093 aa29.44■■■□□ 2.3
SGMS1-210ENST00000619438 PUS7Q96PZ0 661 aaKnown RBP29.44■■■□□ 2.3
SGMS1-210ENST00000619438 TRPC5Q9UL62 973 aaPredicted RBP29.44■■■□□ 2.3
SGMS1-210ENST00000619438 BCL9LQ86UU0 1499 aa29.43■■■□□ 2.3
SGMS1-210ENST00000619438 RBM6P78332 1123 aaKnown RBP29.42■■■□□ 2.3
SGMS1-210ENST00000619438 NLRP13Q86W25 1043 aa29.42■■■□□ 2.3
SGMS1-210ENST00000619438 BRD4O60885 1362 aaPredicted RBP29.42■■■□□ 2.3
SGMS1-210ENST00000619438 CRYBG1Q9Y4K1 1723 aa29.41■■■□□ 2.3
SGMS1-210ENST00000619438 SLC12A5Q9H2X9 1139 aa29.41■■■□□ 2.3
SGMS1-210ENST00000619438 USP6P35125 1406 aa29.41■■■□□ 2.3
SGMS1-210ENST00000619438 FAM83GA6ND36 823 aa29.4■■■□□ 2.3
SGMS1-210ENST00000619438 NLRP6P59044 892 aa29.39■■■□□ 2.3
SGMS1-210ENST00000619438 HDGFL2Q7Z4V5 671 aaPredicted RBP29.39■■■□□ 2.3
SGMS1-210ENST00000619438 PLCH1Q4KWH8 1693 aa29.39■■■□□ 2.3
SGMS1-210ENST00000619438 KTN1Q86UP2 1357 aaKnown RBP29.38■■■□□ 2.29
SGMS1-210ENST00000619438 UNC5CLQ8IV45 518 aa29.38■■■□□ 2.29
SGMS1-210ENST00000619438 ATRNO75882 1429 aa29.38■■■□□ 2.29
SGMS1-210ENST00000619438 CDK12Q9NYV4 1490 aaPredicted RBP29.38■■■□□ 2.29
SGMS1-210ENST00000619438 SLIT2O94813 1529 aa29.38■■■□□ 2.29
SGMS1-210ENST00000619438 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.37■■■□□ 2.29
SGMS1-210ENST00000619438 TERF2IPQ9NYB0 399 aa29.37■■■□□ 2.29
SGMS1-210ENST00000619438 ZC3H6P61129 1189 aaKnown RBP29.36■■■□□ 2.29
SGMS1-210ENST00000619438 PRDM11Q9NQV5 511 aa29.36■■■□□ 2.29
SGMS1-210ENST00000619438 CDCA8Q53HL2 280 aa29.35■■■□□ 2.29
SGMS1-210ENST00000619438 TTC21BQ7Z4L5 1316 aa29.35■■■□□ 2.29
SGMS1-210ENST00000619438 RGS12O14924 1447 aa29.35■■■□□ 2.29
SGMS1-210ENST00000619438 CPSF1Q10570 1443 aaKnown RBP29.33■■■□□ 2.29
SGMS1-210ENST00000619438 NWD2Q9ULI1 1742 aa29.33■■■□□ 2.29
SGMS1-210ENST00000619438 PHRF1Q9P1Y6 1649 aaKnown RBP29.32■■■□□ 2.28
SGMS1-210ENST00000619438 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.32■■■□□ 2.28
SGMS1-210ENST00000619438 BTG4Q9NY30 223 aa29.32■■■□□ 2.28
SGMS1-210ENST00000619438 CCDC9Q9Y3X0 531 aaKnown RBP29.32■■■□□ 2.28
SGMS1-210ENST00000619438 GCP02774 474 aa29.31■■■□□ 2.28
SGMS1-210ENST00000619438 TTC21AQ8NDW8 1320 aa29.31■■■□□ 2.28
SGMS1-210ENST00000619438 SSH2Q76I76 1423 aa29.3■■■□□ 2.28
SGMS1-210ENST00000619438 GJD4Q96KN9 370 aaPredicted RBP29.3■■■□□ 2.28
SGMS1-210ENST00000619438 KIAA0232Q92628 1395 aa29.29■■■□□ 2.28
SGMS1-210ENST00000619438 CHRNA2Q15822 529 aa29.29■■■□□ 2.28
SGMS1-210ENST00000619438 AKAP12Q02952 1782 aa29.29■■■□□ 2.28
SGMS1-210ENST00000619438 COL14A1Q05707 1796 aaKnown RBP29.29■■■□□ 2.28
SGMS1-210ENST00000619438 PRKRIP1Q9H875 184 aaPredicted RBP29.28■■■□□ 2.28
SGMS1-210ENST00000619438 NINLQ9Y2I6 1382 aa29.27■■■□□ 2.28
SGMS1-210ENST00000619438 USP19O94966 1318 aa29.27■■■□□ 2.28
SGMS1-210ENST00000619438 ZBTB7CA1YPR0 619 aa29.26■■■□□ 2.27
SGMS1-210ENST00000619438 GLI3P10071 1580 aa29.25■■■□□ 2.27
SGMS1-210ENST00000619438 NRAPQ86VF7 1730 aa29.25■■■□□ 2.27
SGMS1-210ENST00000619438 VPS72Q15906 364 aa29.25■■■□□ 2.27
SGMS1-210ENST00000619438 POLR3GLQ9BT43 218 aa29.24■■■□□ 2.27
SGMS1-210ENST00000619438 A0A1W2PP64 1363 aa29.24■■■□□ 2.27
SGMS1-210ENST00000619438 CD163L1Q9NR16 1453 aa29.23■■■□□ 2.27
SGMS1-210ENST00000619438 SOX12O15370 315 aa29.23■■■□□ 2.27
SGMS1-210ENST00000619438 EVA1CP58658 441 aa29.21■■■□□ 2.27
SGMS1-210ENST00000619438 KCNH5Q8NCM2 988 aa29.21■■■□□ 2.27
SGMS1-210ENST00000619438 NRKQ7Z2Y5 1582 aa29.21■■■□□ 2.27
SGMS1-210ENST00000619438 PIK3C2AO00443 1686 aa29.21■■■□□ 2.27
SGMS1-210ENST00000619438 NME9Q86XW9 330 aa29.21■■■□□ 2.27
SGMS1-210ENST00000619438 STRN4Q9NRL3 753 aa29.2■■■□□ 2.26
SGMS1-210ENST00000619438 EDC4Q6P2E9 1401 aaKnown RBP29.19■■■□□ 2.26
SGMS1-210ENST00000619438 EP400Q96L91 3159 aa29.19■■■□□ 2.26
SGMS1-210ENST00000619438 ZRANB1Q9UGI0 708 aa29.18■■■□□ 2.26
SGMS1-210ENST00000619438 MON2Q7Z3U7 1717 aa29.18■■■□□ 2.26
SGMS1-210ENST00000619438 CPDO75976 1380 aa29.17■■■□□ 2.26
SGMS1-210ENST00000619438 UPF1Q92900 1129 aaKnown RBP eCLIP29.17■■■□□ 2.26
SGMS1-210ENST00000619438 ANKRD36BQ8N2N9 1353 aa29.16■■■□□ 2.26
SGMS1-210ENST00000619438 BRWD3Q6RI45 1802 aa29.13■■■□□ 2.25
SGMS1-210ENST00000619438 A0A0G2JS52 829 aa29.13■■■□□ 2.25
SGMS1-210ENST00000619438 MYT1Q01538 1121 aa29.13■■■□□ 2.25
SGMS1-210ENST00000619438 USP31Q70CQ4 1352 aa29.12■■■□□ 2.25
SGMS1-210ENST00000619438 SLIT3O75094 1523 aa29.1■■■□□ 2.25
SGMS1-210ENST00000619438 FAM98CQ17RN3 349 aaKnown RBP29.09■■■□□ 2.25
SGMS1-210ENST00000619438 ARHGEF25Q86VW2 580 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms