RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 BMS1Q14692 1282 aaKnown RBP17.79■□□□□ 0.44
COL5A1-208ENST00000618395 MYBBP1AQ9BQG0 1328 aaKnown RBP17.79■□□□□ 0.44
COL5A1-208ENST00000618395 GIGYF2Q6Y7W6 1299 aaKnown RBP17.78■□□□□ 0.44
COL5A1-208ENST00000618395 MPHOSPH10O00566 681 aaKnown RBP17.78■□□□□ 0.44
COL5A1-208ENST00000618395 TRDNQ13061 729 aa17.78■□□□□ 0.44
COL5A1-208ENST00000618395 GBP6Q6ZN66 633 aa17.78■□□□□ 0.44
COL5A1-208ENST00000618395 SPECC1LQ69YQ0 1117 aa17.77■□□□□ 0.44
COL5A1-208ENST00000618395 CASQ1P31415 396 aa17.77■□□□□ 0.44
COL5A1-208ENST00000618395 COG6Q9Y2V7 657 aa17.77■□□□□ 0.44
COL5A1-208ENST00000618395 HDGFP51858 240 aaKnown RBP17.77■□□□□ 0.43
COL5A1-208ENST00000618395 CCDC27Q2M243 656 aa17.76■□□□□ 0.43
COL5A1-208ENST00000618395 SMARCC1Q92922 1105 aaPredicted RBP17.76■□□□□ 0.43
COL5A1-208ENST00000618395 RASSF4Q9H2L5 321 aa17.76■□□□□ 0.43
COL5A1-208ENST00000618395 MPNDQ8N594 471 aa17.76■□□□□ 0.43
COL5A1-208ENST00000618395 MCM4P33991 863 aa17.76■□□□□ 0.43
COL5A1-208ENST00000618395 SMAP1Q8IYB5 467 aaPredicted RBP17.76■□□□□ 0.43
COL5A1-208ENST00000618395 MRVI1Q9Y6F6 885 aa17.76■□□□□ 0.43
COL5A1-208ENST00000618395 DACH1Q9UI36 760 aa17.76■□□□□ 0.43
COL5A1-208ENST00000618395 POTEB2H3BUK9 544 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 KIF3CO14782 793 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 CEP83Q9Y592 693 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 SYCP1Q15431 976 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 GOLGA6L9A6NEM1 432 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 SMC1AQ14683 1233 aaKnown RBP17.75■□□□□ 0.43
COL5A1-208ENST00000618395 A0A1B0GUA9 196 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 FYB1O15117 783 aa17.75■□□□□ 0.43
COL5A1-208ENST00000618395 RSRC1Q96IZ7 334 aaKnown RBP17.74■□□□□ 0.43
COL5A1-208ENST00000618395 FIBPO43427 364 aa17.74■□□□□ 0.43
COL5A1-208ENST00000618395 ZFP91Q96JP5 570 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-208ENST00000618395 KIF20AO95235 890 aa17.74■□□□□ 0.43
COL5A1-208ENST00000618395 XPCQ01831 940 aaPredicted RBP17.74■□□□□ 0.43
COL5A1-208ENST00000618395 TCHPQ9BT92 498 aa17.74■□□□□ 0.43
COL5A1-208ENST00000618395 BRMS1Q9HCU9 246 aa17.74■□□□□ 0.43
COL5A1-208ENST00000618395 ZSCAN12O43309 604 aa17.73■□□□□ 0.43
COL5A1-208ENST00000618395 ZNF396Q96N95 335 aaPredicted RBP17.73■□□□□ 0.43
COL5A1-208ENST00000618395 SEPT11Q9NVA2 429 aaKnown RBP17.73■□□□□ 0.43
COL5A1-208ENST00000618395 CCDC94Q9BW85 323 aaPredicted RBP17.73■□□□□ 0.43
COL5A1-208ENST00000618395 PSMA5P28066 241 aa17.73■□□□□ 0.43
COL5A1-208ENST00000618395 RNF168Q8IYW5 571 aaPredicted RBP17.73■□□□□ 0.43
COL5A1-208ENST00000618395 TNIKQ9UKE5 1360 aa17.73■□□□□ 0.43
COL5A1-208ENST00000618395 ARHGAP29Q52LW3 1261 aa17.72■□□□□ 0.43
COL5A1-208ENST00000618395 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
COL5A1-208ENST00000618395 GCOM1H8Y6P7 765 aaPredicted RBP17.72■□□□□ 0.43
COL5A1-208ENST00000618395 MYZAPP0CAP1 466 aa17.72■□□□□ 0.43
COL5A1-208ENST00000618395 C6orf163Q5TEZ5 329 aa17.72■□□□□ 0.43
COL5A1-208ENST00000618395 CCDC160A6NGH7 325 aa17.72■□□□□ 0.43
COL5A1-208ENST00000618395 CEP164Q9UPV0 1460 aa17.72■□□□□ 0.43
COL5A1-208ENST00000618395 PAXBP1Q9Y5B6 917 aa17.72■□□□□ 0.43
COL5A1-208ENST00000618395 FOSBP53539 338 aa17.71■□□□□ 0.43
COL5A1-208ENST00000618395 EPB41L2O43491 1005 aaKnown RBP17.71■□□□□ 0.43
COL5A1-208ENST00000618395 CDC45O75419 566 aa17.71■□□□□ 0.43
COL5A1-208ENST00000618395 HDGFL2Q7Z4V5 671 aaPredicted RBP17.71■□□□□ 0.43
COL5A1-208ENST00000618395 CIZ1Q9ULV3 898 aaPredicted RBP17.71■□□□□ 0.43
COL5A1-208ENST00000618395 ERICH2A1L162 156 aa17.71■□□□□ 0.43
COL5A1-208ENST00000618395 NFXL1Q6ZNB6 911 aa17.71■□□□□ 0.43
COL5A1-208ENST00000618395 CEP57Q86XR8 500 aa17.71■□□□□ 0.43
COL5A1-208ENST00000618395 ARID4AP29374 1257 aaPredicted RBP17.7■□□□□ 0.42
COL5A1-208ENST00000618395 DZIP1Q86YF9 867 aaKnown RBP17.7■□□□□ 0.42
COL5A1-208ENST00000618395 BRD2P25440 801 aaKnown RBP17.7■□□□□ 0.42
COL5A1-208ENST00000618395 WDR33Q9C0J8 1336 aaKnown RBP17.7■□□□□ 0.42
COL5A1-208ENST00000618395 KIF5CO60282 957 aa17.7■□□□□ 0.42
COL5A1-208ENST00000618395 XBP1P17861 261 aa17.7■□□□□ 0.42
COL5A1-208ENST00000618395 CCDC43Q96MW1 224 aaKnown RBP17.7■□□□□ 0.42
COL5A1-208ENST00000618395 DDX46Q7L014 1031 aaKnown RBP17.7■□□□□ 0.42
COL5A1-208ENST00000618395 MICALL1Q8N3F8 863 aa17.7■□□□□ 0.42
COL5A1-208ENST00000618395 BCL2L13Q9BXK5 485 aa17.7■□□□□ 0.42
COL5A1-208ENST00000618395 NINLQ9Y2I6 1382 aa17.7■□□□□ 0.42
COL5A1-208ENST00000618395 IMMTQ16891 758 aaKnown RBP17.69■□□□□ 0.42
COL5A1-208ENST00000618395 CCDC113Q9H0I3 377 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 FEZ1Q99689 392 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 MSL1Q68DK7 614 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 ZFYP08048 801 aaPredicted RBP17.69■□□□□ 0.42
COL5A1-208ENST00000618395 CLCN1P35523 988 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 IFFO1Q0D2I5 559 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 NAA25Q14CX7 972 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 NUP133Q8WUM0 1156 aa17.69■□□□□ 0.42
COL5A1-208ENST00000618395 NAP1L3Q99457 506 aaPredicted RBP17.69■□□□□ 0.42
COL5A1-208ENST00000618395 JMYQ8N9B5 988 aa17.68■□□□□ 0.42
COL5A1-208ENST00000618395 A0A1B0GUL7 405 aa17.68■□□□□ 0.42
COL5A1-208ENST00000618395 SFPQP23246 707 aaKnown RBP eCLIP17.68■□□□□ 0.42
COL5A1-208ENST00000618395 STIM1Q13586 685 aa17.68■□□□□ 0.42
COL5A1-208ENST00000618395 BACH2Q9BYV9 841 aa17.68■□□□□ 0.42
COL5A1-208ENST00000618395 GOLIM4O00461 696 aa17.67■□□□□ 0.42
COL5A1-208ENST00000618395 KIF5BP33176 963 aa17.67■□□□□ 0.42
COL5A1-208ENST00000618395 MIPOL1Q8TD10 442 aa17.67■□□□□ 0.42
COL5A1-208ENST00000618395 ANKS4BQ8N8V4 417 aa17.67■□□□□ 0.42
COL5A1-208ENST00000618395 C16orf45Q96MC5 204 aaPredicted RBP17.67■□□□□ 0.42
COL5A1-208ENST00000618395 VGLL3A8MV65 326 aa17.67■□□□□ 0.42
COL5A1-208ENST00000618395 C10orf67Q8IYJ2 551 aa17.67■□□□□ 0.42
COL5A1-208ENST00000618395 SEPT14Q6ZU15 432 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.66■□□□□ 0.42
COL5A1-208ENST00000618395 RSPH14Q9UHP6 348 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 V9GYY5 206 aaPredicted RBP17.66■□□□□ 0.42
COL5A1-208ENST00000618395 SOX12O15370 315 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 BANK1Q8NDB2 785 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 SYCE3A1L190 88 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 SMTNL1A8MU46 457 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 DZIP1LQ8IYY4 767 aaKnown RBP17.66■□□□□ 0.42
COL5A1-208ENST00000618395 KRT85P78386 507 aa17.66■□□□□ 0.42
COL5A1-208ENST00000618395 AMOTL1Q8IY63 956 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms