RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 C20orf194Q5TEA3 1177 aa16.89■□□□□ 0.29
CPSF1-212ENST00000616140 HDGFL1Q5TGJ6 251 aa16.89■□□□□ 0.29
CPSF1-212ENST00000616140 SDF4Q9BRK5 362 aa16.89■□□□□ 0.29
CPSF1-212ENST00000616140 A0A0U1RQG5 324 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-212ENST00000616140 FIBPO43427 364 aa16.88■□□□□ 0.29
CPSF1-212ENST00000616140 CHD1LQ86WJ1 897 aa16.87■□□□□ 0.29
CPSF1-212ENST00000616140 SLC52A1Q9NWF4 448 aa16.87■□□□□ 0.29
CPSF1-212ENST00000616140 NINLQ9Y2I6 1382 aa16.87■□□□□ 0.29
CPSF1-212ENST00000616140 IPO7O95373 1038 aaKnown RBP16.86■□□□□ 0.29
CPSF1-212ENST00000616140 PSMA5P28066 241 aa16.86■□□□□ 0.29
CPSF1-212ENST00000616140 VPS37DQ86XT2 251 aa16.86■□□□□ 0.29
CPSF1-212ENST00000616140 MSH5O43196 834 aa16.86■□□□□ 0.29
CPSF1-212ENST00000616140 CDK13Q14004 1512 aaKnown RBP16.85■□□□□ 0.29
CPSF1-212ENST00000616140 K7ELQ4 463 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-212ENST00000616140 EPRSP07814 1512 aaKnown RBP16.85■□□□□ 0.29
CPSF1-212ENST00000616140 SAFBQ15424 915 aaKnown RBP eCLIP16.84■□□□□ 0.29
CPSF1-212ENST00000616140 PDCP20941 246 aa16.84■□□□□ 0.29
CPSF1-212ENST00000616140 TMPOP42166 694 aaKnown RBP16.84■□□□□ 0.29
CPSF1-212ENST00000616140 CEP89Q96ST8 783 aa16.84■□□□□ 0.29
CPSF1-212ENST00000616140 HOOK1Q9UJC3 728 aaKnown RBP16.84■□□□□ 0.29
CPSF1-212ENST00000616140 MCM4P33991 863 aa16.84■□□□□ 0.29
CPSF1-212ENST00000616140 ANKRD20A12PQ8NF67 263 aa16.84■□□□□ 0.29
CPSF1-212ENST00000616140 CCDC39Q9UFE4 941 aa16.84■□□□□ 0.29
CPSF1-212ENST00000616140 TMEM57Q8N5G2 664 aa16.83■□□□□ 0.29
CPSF1-212ENST00000616140 ERICH2A1L162 156 aa16.83■□□□□ 0.28
CPSF1-212ENST00000616140 RAPGEF3O95398 923 aa16.83■□□□□ 0.28
CPSF1-212ENST00000616140 RRS1Q15050 365 aaKnown RBP16.83■□□□□ 0.28
CPSF1-212ENST00000616140 BCL11BQ9C0K0 894 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-212ENST00000616140 PLEKHH2Q8IVE3 1493 aa16.83■□□□□ 0.28
CPSF1-212ENST00000616140 CCT4P50991 539 aaKnown RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 PCMTD1Q96MG8 357 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 TRIM5Q9C035 493 aa16.82■□□□□ 0.28
CPSF1-212ENST00000616140 LRRCC1Q9C099 1032 aa16.82■□□□□ 0.28
CPSF1-212ENST00000616140 RAD21O60216 631 aa16.82■□□□□ 0.28
CPSF1-212ENST00000616140 DNAJC2Q99543 621 aaKnown RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 THUMPD2Q9BTF0 503 aaKnown RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 ZNF692Q9BU19 519 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 DHX16O60231 1041 aaKnown RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 FCHSD2O94868 740 aa16.82■□□□□ 0.28
CPSF1-212ENST00000616140 TPM2P07951 284 aa16.82■□□□□ 0.28
CPSF1-212ENST00000616140 ZNF771Q7L3S4 317 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-212ENST00000616140 ZNF428Q96B54 188 aa16.82■□□□□ 0.28
CPSF1-212ENST00000616140 GPS2Q13227 327 aa16.81■□□□□ 0.28
CPSF1-212ENST00000616140 ATF3P18847 181 aa16.81■□□□□ 0.28
CPSF1-212ENST00000616140 PLEKHO1Q53GL0 409 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-212ENST00000616140 NOL10Q9BSC4 688 aaKnown RBP16.81■□□□□ 0.28
CPSF1-212ENST00000616140 AMOTL1Q8IY63 956 aa16.81■□□□□ 0.28
CPSF1-212ENST00000616140 NSD3Q9BZ95 1437 aa16.81■□□□□ 0.28
CPSF1-212ENST00000616140 SRCIN1Q9C0H9 1055 aa16.81■□□□□ 0.28
CPSF1-212ENST00000616140 HECW1Q76N89 1606 aa16.8■□□□□ 0.28
CPSF1-212ENST00000616140 CWC22Q9HCG8 908 aaKnown RBP16.8■□□□□ 0.28
CPSF1-212ENST00000616140 SUPT6HQ7KZ85 1726 aaKnown RBP16.8■□□□□ 0.28
CPSF1-212ENST00000616140 ESCO1Q5FWF5 840 aa16.8■□□□□ 0.28
CPSF1-212ENST00000616140 MPNDQ8N594 471 aa16.8■□□□□ 0.28
CPSF1-212ENST00000616140 FMNL2Q96PY5 1086 aa16.8■□□□□ 0.28
CPSF1-212ENST00000616140 TSPY26PQ9H489 355 aa16.8■□□□□ 0.28
CPSF1-212ENST00000616140 RARSP54136 660 aaKnown RBP16.79■□□□□ 0.28
CPSF1-212ENST00000616140 KINO60870 393 aaKnown RBP16.79■□□□□ 0.28
CPSF1-212ENST00000616140 SSH1Q8WYL5 1049 aa16.79■□□□□ 0.28
CPSF1-212ENST00000616140 GRPEL1Q9HAV7 217 aa16.79■□□□□ 0.28
CPSF1-212ENST00000616140 PRKCSHP14314 528 aaPredicted RBP16.79■□□□□ 0.28
CPSF1-212ENST00000616140 CCDC47Q96A33 483 aaKnown RBP16.79■□□□□ 0.28
CPSF1-212ENST00000616140 SLC26A8Q96RN1 970 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 GPRASP1Q5JY77 1395 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 ATP2B1P20020 1258 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 IL1RAPL2Q9NP60 686 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 ATAD2Q6PL18 1390 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 CCDC173Q0VFZ6 552 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 NFE2L2Q16236 605 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 MNS1Q8NEH6 495 aa16.78■□□□□ 0.28
CPSF1-212ENST00000616140 NAT10Q9H0A0 1025 aaKnown RBP16.78■□□□□ 0.28
CPSF1-212ENST00000616140 KDM4AO75164 1064 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 CEBPZQ03701 1054 aaKnown RBP16.77■□□□□ 0.28
CPSF1-212ENST00000616140 SIL1Q9H173 461 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 HIP1O00291 1037 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 CCDC70Q6NSX1 233 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 ZNF530Q6P9A1 599 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-212ENST00000616140 ERC1Q8IUD2 1116 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 CIZ1Q9ULV3 898 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-212ENST00000616140 CYP46A1Q9Y6A2 500 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 IFT140Q96RY7 1462 aa16.77■□□□□ 0.28
CPSF1-212ENST00000616140 RTEL1-TNFRSF6BF6WH68 1400 aa16.77■□□□□ 0.27
CPSF1-212ENST00000616140 SRGAP3O43295 1099 aa16.77■□□□□ 0.27
CPSF1-212ENST00000616140 MAP4K4O95819 1239 aaPredicted RBP16.77■□□□□ 0.27
CPSF1-212ENST00000616140 RPAP2Q8IXW5 612 aaPredicted RBP16.77■□□□□ 0.27
CPSF1-212ENST00000616140 SNAPC4Q5SXM2 1469 aa16.77■□□□□ 0.27
CPSF1-212ENST00000616140 ABCC5O15440 1437 aa16.77■□□□□ 0.27
CPSF1-212ENST00000616140 NCOA1Q15788 1441 aa16.76■□□□□ 0.27
CPSF1-212ENST00000616140 RPGRIP1LQ68CZ1 1315 aa16.76■□□□□ 0.27
CPSF1-212ENST00000616140 EXOC6BQ9Y2D4 811 aa16.76■□□□□ 0.27
CPSF1-212ENST00000616140 WDR33Q9C0J8 1336 aaKnown RBP16.76■□□□□ 0.27
CPSF1-212ENST00000616140 PCF11O94913 1555 aaKnown RBP16.76■□□□□ 0.27
CPSF1-212ENST00000616140 LETM1O95202 739 aaPredicted RBP16.76■□□□□ 0.27
CPSF1-212ENST00000616140 CCDC61Q9Y6R9 512 aa16.76■□□□□ 0.27
CPSF1-212ENST00000616140 MRC2Q9UBG0 1479 aa16.75■□□□□ 0.27
CPSF1-212ENST00000616140 HMGXB3Q12766 1538 aa16.75■□□□□ 0.27
CPSF1-212ENST00000616140 KIAA0586Q9BVV6 1533 aa16.75■□□□□ 0.27
CPSF1-212ENST00000616140 FYB1O15117 783 aa16.74■□□□□ 0.27
CPSF1-212ENST00000616140 ANO8Q9HCE9 1232 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-212ENST00000616140 ARHGEF11O15085 1522 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms