RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 WDR63Q8IWG1 891 aa22.52■■□□□ 1.2
SPAST-203ENST00000615843 SURF6O75683 361 aaKnown RBP22.52■■□□□ 1.19
SPAST-203ENST00000615843 NBPF1Q3BBV0 1214 aa22.51■■□□□ 1.19
SPAST-203ENST00000615843 TAF3Q5VWG9 929 aa22.51■■□□□ 1.19
SPAST-203ENST00000615843 AEBP1Q8IUX7 1158 aa22.51■■□□□ 1.19
SPAST-203ENST00000615843 CLASRPQ8N2M8 674 aaKnown RBP22.51■■□□□ 1.19
SPAST-203ENST00000615843 FSD1Q9BTV5 496 aa22.51■■□□□ 1.19
SPAST-203ENST00000615843 SYCE3A1L190 88 aa22.51■■□□□ 1.19
SPAST-203ENST00000615843 DHX8Q14562 1220 aaKnown RBP22.51■■□□□ 1.19
SPAST-203ENST00000615843 TWISTNBQ3B726 338 aaPredicted RBP22.51■■□□□ 1.19
SPAST-203ENST00000615843 PRDM10Q9NQV6 1147 aa22.5■■□□□ 1.19
SPAST-203ENST00000615843 CALRP27797 417 aaKnown RBP22.5■■□□□ 1.19
SPAST-203ENST00000615843 KRT85P78386 507 aa22.49■■□□□ 1.19
SPAST-203ENST00000615843 ZNF396Q96N95 335 aaPredicted RBP22.49■■□□□ 1.19
SPAST-203ENST00000615843 HFM1A2PYH4 1435 aa22.48■■□□□ 1.19
SPAST-203ENST00000615843 SLFN5Q08AF3 891 aa22.48■■□□□ 1.19
SPAST-203ENST00000615843 ERICH2A1L162 156 aa22.48■■□□□ 1.19
SPAST-203ENST00000615843 CEBPZQ03701 1054 aaKnown RBP22.48■■□□□ 1.19
SPAST-203ENST00000615843 TTC5Q8N0Z6 440 aa22.47■■□□□ 1.19
SPAST-203ENST00000615843 SCAPERQ9BY12 1400 aa22.47■■□□□ 1.19
SPAST-203ENST00000615843 AXDND1Q5T1B0 1012 aaPredicted RBP22.47■■□□□ 1.19
SPAST-203ENST00000615843 CABP2Q9NPB3 220 aa22.47■■□□□ 1.19
SPAST-203ENST00000615843 PRKAR2BP31323 418 aa22.47■■□□□ 1.19
SPAST-203ENST00000615843 CBX1P83916 185 aa22.46■■□□□ 1.19
SPAST-203ENST00000615843 DCTN1Q14203 1278 aa22.46■■□□□ 1.19
SPAST-203ENST00000615843 XPCQ01831 940 aaPredicted RBP22.46■■□□□ 1.19
SPAST-203ENST00000615843 CYP46A1Q9Y6A2 500 aa22.46■■□□□ 1.19
SPAST-203ENST00000615843 C20orf194Q5TEA3 1177 aa22.46■■□□□ 1.19
SPAST-203ENST00000615843 ERICH4A6NGS2 130 aa22.46■■□□□ 1.19
SPAST-203ENST00000615843 RRP12Q5JTH9 1297 aaKnown RBP22.46■■□□□ 1.19
SPAST-203ENST00000615843 TBC1D2Q9BYX2 928 aa22.46■■□□□ 1.19
SPAST-203ENST00000615843 TSPYL1Q9H0U9 437 aa22.45■■□□□ 1.19
SPAST-203ENST00000615843 SMARCE1Q969G3 411 aa22.45■■□□□ 1.18
SPAST-203ENST00000615843 ERICH3Q5RHP9 1530 aa22.45■■□□□ 1.18
SPAST-203ENST00000615843 STK38Q15208 465 aa22.45■■□□□ 1.18
SPAST-203ENST00000615843 GNAI2P04899 355 aa22.45■■□□□ 1.18
SPAST-203ENST00000615843 CCDC191Q8NCU4 936 aa22.44■■□□□ 1.18
SPAST-203ENST00000615843 HIP1O00291 1037 aa22.44■■□□□ 1.18
SPAST-203ENST00000615843 NEUROD6Q96NK8 337 aa22.44■■□□□ 1.18
SPAST-203ENST00000615843 SERPINC1P01008 464 aa22.44■■□□□ 1.18
SPAST-203ENST00000615843 GTF2E1P29083 439 aaPredicted RBP22.44■■□□□ 1.18
SPAST-203ENST00000615843 FILIP1LQ4L180 1135 aa22.44■■□□□ 1.18
SPAST-203ENST00000615843 KIAA1107Q9UPP5 1409 aa22.44■■□□□ 1.18
SPAST-203ENST00000615843 WASHC4Q2M389 1173 aa22.43■■□□□ 1.18
SPAST-203ENST00000615843 CFTRP13569 1480 aa22.43■■□□□ 1.18
SPAST-203ENST00000615843 NUP62CLQ9H1M0 184 aa22.43■■□□□ 1.18
SPAST-203ENST00000615843 ZMYND15Q9H091 742 aa22.42■■□□□ 1.18
SPAST-203ENST00000615843 LARP1BQ659C4 914 aaKnown RBP22.42■■□□□ 1.18
SPAST-203ENST00000615843 ERLIN1O75477 346 aa22.42■■□□□ 1.18
SPAST-203ENST00000615843 SKIDA1Q1XH10 827 aa22.42■■□□□ 1.18
SPAST-203ENST00000615843 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
SPAST-203ENST00000615843 EIF3JO75822 258 aaKnown RBP22.41■■□□□ 1.18
SPAST-203ENST00000615843 CCDC30Q5VVM6 783 aa22.41■■□□□ 1.18
SPAST-203ENST00000615843 LRRCC1Q9C099 1032 aa22.41■■□□□ 1.18
SPAST-203ENST00000615843 CFAP70Q5T0N1 1121 aa22.41■■□□□ 1.18
SPAST-203ENST00000615843 TNPO1Q92973 898 aaKnown RBP22.4■■□□□ 1.18
SPAST-203ENST00000615843 PTPRGP23470 1445 aa22.4■■□□□ 1.18
SPAST-203ENST00000615843 ANKRD1Q15327 319 aa22.4■■□□□ 1.18
SPAST-203ENST00000615843 FILIP1Q7Z7B0 1213 aa22.4■■□□□ 1.18
SPAST-203ENST00000615843 TMEM132EQ6IEE7 984 aa22.39■■□□□ 1.18
SPAST-203ENST00000615843 FANCD2Q9BXW9 1451 aa22.39■■□□□ 1.18
SPAST-203ENST00000615843 SPATA32Q96LK8 384 aa22.39■■□□□ 1.17
SPAST-203ENST00000615843 TMX4Q9H1E5 349 aaPredicted RBP22.39■■□□□ 1.17
SPAST-203ENST00000615843 ME1P48163 572 aa22.38■■□□□ 1.17
SPAST-203ENST00000615843 FAM177A1Q8N128 213 aaPredicted RBP22.38■■□□□ 1.17
SPAST-203ENST00000615843 RIC3Q7Z5B4 369 aa22.38■■□□□ 1.17
SPAST-203ENST00000615843 ERBINQ96RT1 1412 aa22.38■■□□□ 1.17
SPAST-203ENST00000615843 BRPF1P55201 1214 aaPredicted RBP22.38■■□□□ 1.17
SPAST-203ENST00000615843 WWC1Q8IX03 1113 aa22.37■■□□□ 1.17
SPAST-203ENST00000615843 STK3Q13188 491 aa22.37■■□□□ 1.17
SPAST-203ENST00000615843 AMOTL1Q8IY63 956 aa22.37■■□□□ 1.17
SPAST-203ENST00000615843 CEP57L1Q8IYX8 460 aa22.37■■□□□ 1.17
SPAST-203ENST00000615843 DHX16O60231 1041 aaKnown RBP22.37■■□□□ 1.17
SPAST-203ENST00000615843 SSFA2P28290 1259 aa22.37■■□□□ 1.17
SPAST-203ENST00000615843 BRMS1Q9HCU9 246 aa22.37■■□□□ 1.17
SPAST-203ENST00000615843 OFD1O75665 1012 aa22.36■■□□□ 1.17
SPAST-203ENST00000615843 MAPK8IP2Q13387 824 aaPredicted RBP22.36■■□□□ 1.17
SPAST-203ENST00000615843 KIAA0754O94854 1291 aa22.36■■□□□ 1.17
SPAST-203ENST00000615843 XBP1P17861 261 aa22.36■■□□□ 1.17
SPAST-203ENST00000615843 AIMP1Q12904 312 aaKnown RBP22.36■■□□□ 1.17
SPAST-203ENST00000615843 UBXN4Q92575 508 aa22.36■■□□□ 1.17
SPAST-203ENST00000615843 MAP3K11Q16584 847 aa22.36■■□□□ 1.17
SPAST-203ENST00000615843 JMYQ8N9B5 988 aa22.36■■□□□ 1.17
SPAST-203ENST00000615843 KDM4AO75164 1064 aa22.35■■□□□ 1.17
SPAST-203ENST00000615843 SLC4A2P04920 1241 aa22.35■■□□□ 1.17
SPAST-203ENST00000615843 CLCN1P35523 988 aa22.35■■□□□ 1.17
SPAST-203ENST00000615843 CCT4P50991 539 aaKnown RBP22.35■■□□□ 1.17
SPAST-203ENST00000615843 TMEM57Q8N5G2 664 aa22.35■■□□□ 1.17
SPAST-203ENST00000615843 C11orf95C9JLR9 678 aaPredicted RBP22.34■■□□□ 1.17
SPAST-203ENST00000615843 CBFA2T2O43439 604 aa22.34■■□□□ 1.17
SPAST-203ENST00000615843 ATP2B1P20020 1258 aa22.34■■□□□ 1.17
SPAST-203ENST00000615843 ZSCAN31Q96LW9 406 aaPredicted RBP22.34■■□□□ 1.17
SPAST-203ENST00000615843 ERC1Q8IUD2 1116 aa22.34■■□□□ 1.17
SPAST-203ENST00000615843 PPFIBP1Q86W92 1011 aa22.34■■□□□ 1.17
SPAST-203ENST00000615843 DNAJC2Q99543 621 aaKnown RBP22.34■■□□□ 1.17
SPAST-203ENST00000615843 SRCIN1Q9C0H9 1055 aa22.34■■□□□ 1.17
SPAST-203ENST00000615843 SLC12A5Q9H2X9 1139 aa22.33■■□□□ 1.17
SPAST-203ENST00000615843 MCM5P33992 734 aa22.33■■□□□ 1.17
SPAST-203ENST00000615843 G3V3G9 751 aa22.33■■□□□ 1.16
SPAST-203ENST00000615843 HSP90AB3PQ58FF7 597 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms