RNA–Protein interactions for RNA: ENST00000606878.1

LINC00240-203, long intergenic non-protein coding RNA 240, humanhuman

TSL 1 (best)

Gene LINC00240, Length 927 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00240-203ENST00000606878 ZNF692Q9BU19 519 aaPredicted RBP23.34■■□□□ 1.33
LINC00240-203ENST00000606878 ABTB2Q8N961 1025 aa23.33■■□□□ 1.33
LINC00240-203ENST00000606878 RBM6P78332 1123 aaKnown RBP23.32■■□□□ 1.32
LINC00240-203ENST00000606878 TRPC5Q9UL62 973 aaPredicted RBP23.32■■□□□ 1.32
LINC00240-203ENST00000606878 ITSN1Q15811 1721 aa23.31■■□□□ 1.32
LINC00240-203ENST00000606878 ATAD2Q6PL18 1390 aa23.31■■□□□ 1.32
LINC00240-203ENST00000606878 NUTM2GQ5VZR2 741 aa23.3■■□□□ 1.32
LINC00240-203ENST00000606878 PUS7Q96PZ0 661 aaKnown RBP23.3■■□□□ 1.32
LINC00240-203ENST00000606878 BRD4O60885 1362 aaPredicted RBP23.29■■□□□ 1.32
LINC00240-203ENST00000606878 TESK2Q96S53 571 aa23.29■■□□□ 1.32
LINC00240-203ENST00000606878 FAM83GA6ND36 823 aa23.28■■□□□ 1.32
LINC00240-203ENST00000606878 UNC5CLQ8IV45 518 aa23.28■■□□□ 1.32
LINC00240-203ENST00000606878 TMC1Q8TDI8 760 aa23.28■■□□□ 1.32
LINC00240-203ENST00000606878 NLRP13Q86W25 1043 aa23.27■■□□□ 1.32
LINC00240-203ENST00000606878 TRPM3Q9HCF6 1732 aaPredicted RBP23.25■■□□□ 1.31
LINC00240-203ENST00000606878 USP47Q96K76 1375 aa23.25■■□□□ 1.31
LINC00240-203ENST00000606878 TOPAZ1Q8N9V7 1692 aa23.24■■□□□ 1.31
LINC00240-203ENST00000606878 BCL9LQ86UU0 1499 aa23.24■■□□□ 1.31
LINC00240-203ENST00000606878 NLRP6P59044 892 aa23.23■■□□□ 1.31
LINC00240-203ENST00000606878 TMF1P82094 1093 aa23.23■■□□□ 1.31
LINC00240-203ENST00000606878 SLC12A5Q9H2X9 1139 aa23.23■■□□□ 1.31
LINC00240-203ENST00000606878 USP6P35125 1406 aa23.23■■□□□ 1.31
LINC00240-203ENST00000606878 GJD4Q96KN9 370 aaPredicted RBP23.22■■□□□ 1.31
LINC00240-203ENST00000606878 PRDM11Q9NQV5 511 aa23.22■■□□□ 1.31
LINC00240-203ENST00000606878 HDGFL2Q7Z4V5 671 aaPredicted RBP23.21■■□□□ 1.31
LINC00240-203ENST00000606878 TERF2IPQ9NYB0 399 aa23.21■■□□□ 1.31
LINC00240-203ENST00000606878 ALS2Q96Q42 1657 aa23.2■■□□□ 1.3
LINC00240-203ENST00000606878 SLIT2O94813 1529 aa23.2■■□□□ 1.3
LINC00240-203ENST00000606878 TTC21BQ7Z4L5 1316 aa23.2■■□□□ 1.3
LINC00240-203ENST00000606878 ZC3H6P61129 1189 aaKnown RBP23.2■■□□□ 1.3
LINC00240-203ENST00000606878 ATRNO75882 1429 aa23.19■■□□□ 1.3
LINC00240-203ENST00000606878 KTN1Q86UP2 1357 aaKnown RBP23.19■■□□□ 1.3
LINC00240-203ENST00000606878 CDCA8Q53HL2 280 aa23.19■■□□□ 1.3
LINC00240-203ENST00000606878 BTG4Q9NY30 223 aa23.19■■□□□ 1.3
LINC00240-203ENST00000606878 GCP02774 474 aa23.18■■□□□ 1.3
LINC00240-203ENST00000606878 CCDC9Q9Y3X0 531 aaKnown RBP23.18■■□□□ 1.3
LINC00240-203ENST00000606878 CPSF1Q10570 1443 aaKnown RBP23.17■■□□□ 1.3
LINC00240-203ENST00000606878 TTC21AQ8NDW8 1320 aa23.17■■□□□ 1.3
LINC00240-203ENST00000606878 VPS72Q15906 364 aa23.17■■□□□ 1.3
LINC00240-203ENST00000606878 CDK12Q9NYV4 1490 aaPredicted RBP23.17■■□□□ 1.3
LINC00240-203ENST00000606878 SSH2Q76I76 1423 aa23.16■■□□□ 1.3
LINC00240-203ENST00000606878 KIAA0232Q92628 1395 aa23.15■■□□□ 1.3
LINC00240-203ENST00000606878 USP19O94966 1318 aa23.15■■□□□ 1.3
LINC00240-203ENST00000606878 CHRNA2Q15822 529 aa23.15■■□□□ 1.3
LINC00240-203ENST00000606878 MARF1Q9Y4F3 1742 aaKnown RBP23.15■■□□□ 1.3
LINC00240-203ENST00000606878 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.14■■□□□ 1.29
LINC00240-203ENST00000606878 EIF4G2P78344 907 aaKnown RBP eCLIP23.13■■□□□ 1.29
LINC00240-203ENST00000606878 EVA1CP58658 441 aa23.12■■□□□ 1.29
LINC00240-203ENST00000606878 NINLQ9Y2I6 1382 aa23.12■■□□□ 1.29
LINC00240-203ENST00000606878 KCNH5Q8NCM2 988 aa23.11■■□□□ 1.29
LINC00240-203ENST00000606878 CPDO75976 1380 aa23.09■■□□□ 1.29
LINC00240-203ENST00000606878 ZBTB7CA1YPR0 619 aa23.08■■□□□ 1.29
LINC00240-203ENST00000606878 STRN4Q9NRL3 753 aa23.08■■□□□ 1.29
LINC00240-203ENST00000606878 ABCA3Q99758 1704 aa23.08■■□□□ 1.28
LINC00240-203ENST00000606878 RGS12O14924 1447 aa23.08■■□□□ 1.28
LINC00240-203ENST00000606878 ONECUT3O60422 494 aaPredicted RBP23.07■■□□□ 1.28
LINC00240-203ENST00000606878 CD163L1Q9NR16 1453 aa23.06■■□□□ 1.28
LINC00240-203ENST00000606878 HSPA5P11021 654 aaKnown RBP23.06■■□□□ 1.28
LINC00240-203ENST00000606878 NME9Q86XW9 330 aa23.06■■□□□ 1.28
LINC00240-203ENST00000606878 A0A1W2PP64 1363 aa23.05■■□□□ 1.28
LINC00240-203ENST00000606878 COL14A1Q05707 1796 aaKnown RBP23.05■■□□□ 1.28
LINC00240-203ENST00000606878 ZRANB1Q9UGI0 708 aa23.05■■□□□ 1.28
LINC00240-203ENST00000606878 SOX12O15370 315 aa23.04■■□□□ 1.28
LINC00240-203ENST00000606878 SEPT12Q8IYM1 358 aa23.04■■□□□ 1.28
LINC00240-203ENST00000606878 EDC4Q6P2E9 1401 aaKnown RBP23.04■■□□□ 1.28
LINC00240-203ENST00000606878 SPATA31A5Q5VU36 1347 aa23.04■■□□□ 1.28
LINC00240-203ENST00000606878 SPATA31A7Q8IWB4 1347 aa23.04■■□□□ 1.28
LINC00240-203ENST00000606878 USP31Q70CQ4 1352 aa23.03■■□□□ 1.28
LINC00240-203ENST00000606878 NWD2Q9ULI1 1742 aa23.03■■□□□ 1.28
LINC00240-203ENST00000606878 UPF1Q92900 1129 aaKnown RBP eCLIP23.03■■□□□ 1.28
LINC00240-203ENST00000606878 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.02■■□□□ 1.28
LINC00240-203ENST00000606878 ARHGEF25Q86VW2 580 aa23.02■■□□□ 1.28
LINC00240-203ENST00000606878 CRYBG1Q9Y4K1 1723 aa23.02■■□□□ 1.28
LINC00240-203ENST00000606878 AKAP12Q02952 1782 aa23.01■■□□□ 1.27
LINC00240-203ENST00000606878 A0A0G2JS52 829 aa23.01■■□□□ 1.27
LINC00240-203ENST00000606878 MYT1Q01538 1121 aa23.01■■□□□ 1.27
LINC00240-203ENST00000606878 FAM98CQ17RN3 349 aaKnown RBP23.01■■□□□ 1.27
LINC00240-203ENST00000606878 AATKQ6ZMQ8 1374 aa23.01■■□□□ 1.27
LINC00240-203ENST00000606878 ANKRD36BQ8N2N9 1353 aa23.01■■□□□ 1.27
LINC00240-203ENST00000606878 PLCH1Q4KWH8 1693 aa23■■□□□ 1.27
LINC00240-203ENST00000606878 POLR3GLQ9BT43 218 aa23■■□□□ 1.27
LINC00240-203ENST00000606878 PHRF1Q9P1Y6 1649 aaKnown RBP22.99■■□□□ 1.27
LINC00240-203ENST00000606878 SPATA31A1Q5TZJ5 1347 aa22.99■■□□□ 1.27
LINC00240-203ENST00000606878 LARP1Q6PKG0 1096 aaKnown RBP22.98■■□□□ 1.27
LINC00240-203ENST00000606878 COG3Q96JB2 828 aa22.98■■□□□ 1.27
LINC00240-203ENST00000606878 USP35Q9P2H5 1018 aa22.98■■□□□ 1.27
LINC00240-203ENST00000606878 SLIT3O75094 1523 aa22.98■■□□□ 1.27
LINC00240-203ENST00000606878 GLI3P10071 1580 aa22.97■■□□□ 1.27
LINC00240-203ENST00000606878 NRKQ7Z2Y5 1582 aa22.97■■□□□ 1.27
LINC00240-203ENST00000606878 PIK3C2AO00443 1686 aa22.97■■□□□ 1.27
LINC00240-203ENST00000606878 AXIN2Q9Y2T1 843 aa22.96■■□□□ 1.27
LINC00240-203ENST00000606878 CAMTA1Q9Y6Y1 1673 aa22.96■■□□□ 1.27
LINC00240-203ENST00000606878 MON2Q7Z3U7 1717 aa22.95■■□□□ 1.26
LINC00240-203ENST00000606878 KRT27Q7Z3Y8 459 aa22.95■■□□□ 1.26
LINC00240-203ENST00000606878 TCP11L2Q8N4U5 519 aa22.94■■□□□ 1.26
LINC00240-203ENST00000606878 FYB1O15117 783 aa22.93■■□□□ 1.26
LINC00240-203ENST00000606878 BARGINQ6ZT62 677 aa22.93■■□□□ 1.26
LINC00240-203ENST00000606878 CSB-PGBD3P0DP91 1061 aa22.92■■□□□ 1.26
LINC00240-203ENST00000606878 TOM1L2Q6ZVM7 507 aa22.92■■□□□ 1.26
LINC00240-203ENST00000606878 CARD14Q9BXL6 1004 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms