RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 PRR36Q9H6K5 1346 aa26.42■■□□□ 1.82
CCDC9-205ENST00000600117 NUTM2FA1L443 756 aa26.42■■□□□ 1.82
CCDC9-205ENST00000600117 ATP7BP35670 1465 aa26.42■■□□□ 1.82
CCDC9-205ENST00000600117 KIF1AQ12756 1690 aa26.41■■□□□ 1.82
CCDC9-205ENST00000600117 RGPD8O14715 1765 aaPredicted RBP26.41■■□□□ 1.82
CCDC9-205ENST00000600117 SLC24A1O60721 1099 aa26.4■■□□□ 1.82
CCDC9-205ENST00000600117 SEPT12Q8IYM1 358 aa26.4■■□□□ 1.82
CCDC9-205ENST00000600117 CABP2Q9NPB3 220 aa26.39■■□□□ 1.82
CCDC9-205ENST00000600117 TOPAZ1Q8N9V7 1692 aa26.38■■□□□ 1.81
CCDC9-205ENST00000600117 SRPK2P78362 688 aaKnown RBP26.37■■□□□ 1.81
CCDC9-205ENST00000600117 TMF1P82094 1093 aa26.37■■□□□ 1.81
CCDC9-205ENST00000600117 VPS72Q15906 364 aa26.37■■□□□ 1.81
CCDC9-205ENST00000600117 NUDT16Q96DE0 195 aaKnown RBP26.37■■□□□ 1.81
CCDC9-205ENST00000600117 NWD2Q9ULI1 1742 aa26.36■■□□□ 1.81
CCDC9-205ENST00000600117 ONECUT3O60422 494 aaPredicted RBP26.36■■□□□ 1.81
CCDC9-205ENST00000600117 PUS7Q96PZ0 661 aaKnown RBP26.35■■□□□ 1.81
CCDC9-205ENST00000600117 KRT28Q7Z3Y7 464 aa26.34■■□□□ 1.81
CCDC9-205ENST00000600117 PLCH1Q4KWH8 1693 aa26.34■■□□□ 1.81
CCDC9-205ENST00000600117 ITSN1Q15811 1721 aa26.34■■□□□ 1.81
CCDC9-205ENST00000600117 KRT27Q7Z3Y8 459 aa26.33■■□□□ 1.81
CCDC9-205ENST00000600117 TNS3Q68CZ2 1445 aa26.31■■□□□ 1.8
CCDC9-205ENST00000600117 C11orf95C9JLR9 678 aaPredicted RBP26.31■■□□□ 1.8
CCDC9-205ENST00000600117 HAP1P54257 671 aaPredicted RBP26.31■■□□□ 1.8
CCDC9-205ENST00000600117 CCDC61Q9Y6R9 512 aa26.31■■□□□ 1.8
CCDC9-205ENST00000600117 CCDC9Q9Y3X0 531 aaKnown RBP26.29■■□□□ 1.8
CCDC9-205ENST00000600117 BAG6P46379 1132 aa26.28■■□□□ 1.8
CCDC9-205ENST00000600117 ABCA3Q99758 1704 aa26.28■■□□□ 1.8
CCDC9-205ENST00000600117 PSDA5PKW4 1024 aaPredicted RBP26.27■■□□□ 1.8
CCDC9-205ENST00000600117 PSME1Q06323 249 aa26.27■■□□□ 1.8
CCDC9-205ENST00000600117 CDCA8Q53HL2 280 aa26.27■■□□□ 1.8
CCDC9-205ENST00000600117 PHF8Q9UPP1 1060 aa26.27■■□□□ 1.8
CCDC9-205ENST00000600117 PPIP5K1Q6PFW1 1433 aa26.27■■□□□ 1.8
CCDC9-205ENST00000600117 PLEKHG3A1L390 1219 aa26.26■■□□□ 1.79
CCDC9-205ENST00000600117 CABLES1Q8TDN4 633 aa26.26■■□□□ 1.79
CCDC9-205ENST00000600117 PMFBP1Q8TBY8 1022 aa26.25■■□□□ 1.79
CCDC9-205ENST00000600117 SBNO1A3KN83 1393 aa26.24■■□□□ 1.79
CCDC9-205ENST00000600117 CABP1Q9NZU7 370 aa26.24■■□□□ 1.79
CCDC9-205ENST00000600117 MYOM1P52179 1685 aa26.23■■□□□ 1.79
CCDC9-205ENST00000600117 POLR3AO14802 1390 aaPredicted RBP26.22■■□□□ 1.79
CCDC9-205ENST00000600117 ARHGEF10O15013 1369 aa26.22■■□□□ 1.79
CCDC9-205ENST00000600117 KIF7Q2M1P5 1343 aa26.22■■□□□ 1.79
CCDC9-205ENST00000600117 RGPD1P0DJD0 1748 aa26.2■■□□□ 1.79
CCDC9-205ENST00000600117 A0A0G2JS52 829 aa26.2■■□□□ 1.78
CCDC9-205ENST00000600117 MYT1Q01538 1121 aa26.2■■□□□ 1.78
CCDC9-205ENST00000600117 SLC12A5Q9H2X9 1139 aa26.2■■□□□ 1.78
CCDC9-205ENST00000600117 NINLQ9Y2I6 1382 aa26.2■■□□□ 1.78
CCDC9-205ENST00000600117 NRAPQ86VF7 1730 aa26.19■■□□□ 1.78
CCDC9-205ENST00000600117 ACEP12821 1306 aa26.19■■□□□ 1.78
CCDC9-205ENST00000600117 CD163L1Q9NR16 1453 aa26.19■■□□□ 1.78
CCDC9-205ENST00000600117 FAM83GA6ND36 823 aa26.19■■□□□ 1.78
CCDC9-205ENST00000600117 PLEKHG5O94827 1062 aa26.19■■□□□ 1.78
CCDC9-205ENST00000600117 CCDC7Q96M83 1385 aa26.19■■□□□ 1.78
CCDC9-205ENST00000600117 LMOD2Q6P5Q4 547 aa26.18■■□□□ 1.78
CCDC9-205ENST00000600117 WASHC2AQ641Q2 1341 aa26.17■■□□□ 1.78
CCDC9-205ENST00000600117 CPSF1Q10570 1443 aaKnown RBP26.17■■□□□ 1.78
CCDC9-205ENST00000600117 FAM98CQ17RN3 349 aaKnown RBP26.17■■□□□ 1.78
CCDC9-205ENST00000600117 NGDNQ8NEJ9 315 aaKnown RBP26.17■■□□□ 1.78
CCDC9-205ENST00000600117 TMC1Q8TDI8 760 aa26.17■■□□□ 1.78
CCDC9-205ENST00000600117 AKAP12Q02952 1782 aa26.17■■□□□ 1.78
CCDC9-205ENST00000600117 EN1Q05925 392 aaPredicted RBP26.15■■□□□ 1.78
CCDC9-205ENST00000600117 POLR3GLQ9BT43 218 aa26.15■■□□□ 1.78
CCDC9-205ENST00000600117 TRPM3Q9HCF6 1732 aaPredicted RBP26.13■■□□□ 1.77
CCDC9-205ENST00000600117 MON2Q7Z3U7 1717 aa26.12■■□□□ 1.77
CCDC9-205ENST00000600117 BTG4Q9NY30 223 aa26.12■■□□□ 1.77
CCDC9-205ENST00000600117 COL14A1Q05707 1796 aaKnown RBP26.12■■□□□ 1.77
CCDC9-205ENST00000600117 DISP2A7MBM2 1401 aa26.12■■□□□ 1.77
CCDC9-205ENST00000600117 USP6P35125 1406 aa26.12■■□□□ 1.77
CCDC9-205ENST00000600117 A0A1W2PP64 1363 aa26.11■■□□□ 1.77
CCDC9-205ENST00000600117 R3HDM1Q15032 1099 aaKnown RBP26.11■■□□□ 1.77
CCDC9-205ENST00000600117 ANKRD36BQ8N2N9 1353 aa26.1■■□□□ 1.77
CCDC9-205ENST00000600117 SSH2Q76I76 1423 aa26.1■■□□□ 1.77
CCDC9-205ENST00000600117 TNS1Q9HBL0 1735 aaKnown RBP26.1■■□□□ 1.77
CCDC9-205ENST00000600117 NRKQ7Z2Y5 1582 aa26.09■■□□□ 1.77
CCDC9-205ENST00000600117 ZNF692Q9BU19 519 aaPredicted RBP26.09■■□□□ 1.77
CCDC9-205ENST00000600117 TERF2IPQ9NYB0 399 aa26.09■■□□□ 1.77
CCDC9-205ENST00000600117 KTN1Q86UP2 1357 aaKnown RBP26.07■■□□□ 1.76
CCDC9-205ENST00000600117 HDGFL2Q7Z4V5 671 aaPredicted RBP26.07■■□□□ 1.76
CCDC9-205ENST00000600117 SPATA31A5Q5VU36 1347 aa26.07■■□□□ 1.76
CCDC9-205ENST00000600117 SPATA31A7Q8IWB4 1347 aa26.07■■□□□ 1.76
CCDC9-205ENST00000600117 BRD4O60885 1362 aaPredicted RBP26.07■■□□□ 1.76
CCDC9-205ENST00000600117 ALS2Q96Q42 1657 aa26.06■■□□□ 1.76
CCDC9-205ENST00000600117 THSD7AQ9UPZ6 1657 aa26.06■■□□□ 1.76
CCDC9-205ENST00000600117 FAM182BQ5T319 152 aa26.06■■□□□ 1.76
CCDC9-205ENST00000600117 EDC4Q6P2E9 1401 aaKnown RBP26.03■■□□□ 1.76
CCDC9-205ENST00000600117 ZNF316A6NFI3 1004 aaPredicted RBP26.02■■□□□ 1.76
CCDC9-205ENST00000600117 EZH2Q15910 746 aaKnown RBP26.02■■□□□ 1.76
CCDC9-205ENST00000600117 CARD14Q9BXL6 1004 aa26.02■■□□□ 1.76
CCDC9-205ENST00000600117 TTC21BQ7Z4L5 1316 aa26.01■■□□□ 1.75
CCDC9-205ENST00000600117 PANK3Q9H999 370 aa26■■□□□ 1.75
CCDC9-205ENST00000600117 CRYBG1Q9Y4K1 1723 aa26■■□□□ 1.75
CCDC9-205ENST00000600117 CAMKK2Q96RR4 588 aa25.99■■□□□ 1.75
CCDC9-205ENST00000600117 PAK3O75914 559 aaPredicted RBP25.98■■□□□ 1.75
CCDC9-205ENST00000600117 PIK3C2AO00443 1686 aa25.98■■□□□ 1.75
CCDC9-205ENST00000600117 NSD3Q9BZ95 1437 aa25.97■■□□□ 1.75
CCDC9-205ENST00000600117 PARD3Q8TEW0 1356 aa25.97■■□□□ 1.75
CCDC9-205ENST00000600117 TTC21AQ8NDW8 1320 aa25.97■■□□□ 1.75
CCDC9-205ENST00000600117 FAM196AQ6ZSG2 479 aa25.96■■□□□ 1.75
CCDC9-205ENST00000600117 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.95■■□□□ 1.74
CCDC9-205ENST00000600117 TRIM37O94972 964 aa25.94■■□□□ 1.74
CCDC9-205ENST00000600117 PRDM11Q9NQV5 511 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms