RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 EVC2Q86UK5 1308 aa21.5■■□□□ 1.03
LIG1-215ENST00000597901 ABTB2Q8N961 1025 aa21.49■■□□□ 1.03
LIG1-215ENST00000597901 BTG4Q9NY30 223 aa21.49■■□□□ 1.03
LIG1-215ENST00000597901 CCDC9Q9Y3X0 531 aaKnown RBP21.49■■□□□ 1.03
LIG1-215ENST00000597901 TONSLQ96HA7 1378 aa21.48■■□□□ 1.03
LIG1-215ENST00000597901 CARD11Q9BXL7 1154 aa21.48■■□□□ 1.03
LIG1-215ENST00000597901 TRPM3Q9HCF6 1732 aaPredicted RBP21.48■■□□□ 1.03
LIG1-215ENST00000597901 PPIP5K1Q6PFW1 1433 aa21.47■■□□□ 1.03
LIG1-215ENST00000597901 MARF1Q9Y4F3 1742 aaKnown RBP21.47■■□□□ 1.03
LIG1-215ENST00000597901 ONECUT3O60422 494 aaPredicted RBP21.47■■□□□ 1.03
LIG1-215ENST00000597901 RALGAPBQ86X10 1494 aa21.46■■□□□ 1.03
LIG1-215ENST00000597901 PRDM11Q9NQV5 511 aa21.45■■□□□ 1.02
LIG1-215ENST00000597901 TRPM1Q7Z4N2 1603 aa21.44■■□□□ 1.02
LIG1-215ENST00000597901 ZC3H6P61129 1189 aaKnown RBP21.44■■□□□ 1.02
LIG1-215ENST00000597901 SEPT12Q8IYM1 358 aa21.44■■□□□ 1.02
LIG1-215ENST00000597901 ALS2Q96Q42 1657 aa21.44■■□□□ 1.02
LIG1-215ENST00000597901 NLRP13Q86W25 1043 aa21.43■■□□□ 1.02
LIG1-215ENST00000597901 CHRNA2Q15822 529 aa21.42■■□□□ 1.02
LIG1-215ENST00000597901 KIAA0232Q92628 1395 aa21.41■■□□□ 1.02
LIG1-215ENST00000597901 ZNF692Q9BU19 519 aaPredicted RBP21.41■■□□□ 1.02
LIG1-215ENST00000597901 ITSN1Q15811 1721 aa21.41■■□□□ 1.02
LIG1-215ENST00000597901 BRD4O60885 1362 aaPredicted RBP21.4■■□□□ 1.02
LIG1-215ENST00000597901 GCP02774 474 aa21.39■■□□□ 1.01
LIG1-215ENST00000597901 GLI3P10071 1580 aa21.39■■□□□ 1.01
LIG1-215ENST00000597901 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.38■■□□□ 1.01
LIG1-215ENST00000597901 NLRP6P59044 892 aa21.38■■□□□ 1.01
LIG1-215ENST00000597901 CCDC125Q86Z20 511 aa21.38■■□□□ 1.01
LIG1-215ENST00000597901 TOPAZ1Q8N9V7 1692 aa21.37■■□□□ 1.01
LIG1-215ENST00000597901 QRICH2Q9H0J4 1663 aa21.37■■□□□ 1.01
LIG1-215ENST00000597901 SPATA31A5Q5VU36 1347 aa21.37■■□□□ 1.01
LIG1-215ENST00000597901 SPATA31A7Q8IWB4 1347 aa21.37■■□□□ 1.01
LIG1-215ENST00000597901 FAM98CQ17RN3 349 aaKnown RBP21.37■■□□□ 1.01
LIG1-215ENST00000597901 USP19O94966 1318 aa21.36■■□□□ 1.01
LIG1-215ENST00000597901 ABCA3Q99758 1704 aa21.36■■□□□ 1.01
LIG1-215ENST00000597901 EVA1CP58658 441 aa21.36■■□□□ 1.01
LIG1-215ENST00000597901 USP6P35125 1406 aa21.36■■□□□ 1.01
LIG1-215ENST00000597901 KRT27Q7Z3Y8 459 aa21.35■■□□□ 1.01
LIG1-215ENST00000597901 STRN4Q9NRL3 753 aa21.35■■□□□ 1.01
LIG1-215ENST00000597901 A0A0G2JS52 829 aa21.34■■□□□ 1.01
LIG1-215ENST00000597901 MYT1Q01538 1121 aa21.34■■□□□ 1.01
LIG1-215ENST00000597901 NWD2Q9ULI1 1742 aa21.34■■□□□ 1.01
LIG1-215ENST00000597901 SBNO2Q9Y2G9 1366 aa21.34■■□□□ 1.01
LIG1-215ENST00000597901 TTC21BQ7Z4L5 1316 aa21.33■■□□□ 1.01
LIG1-215ENST00000597901 SSH2Q76I76 1423 aa21.33■■□□□ 1.01
LIG1-215ENST00000597901 PCGF6Q9BYE7 350 aa21.33■■□□□ 1.01
LIG1-215ENST00000597901 COL14A1Q05707 1796 aaKnown RBP21.33■■□□□ 1
LIG1-215ENST00000597901 PLCH1Q4KWH8 1693 aa21.32■■□□□ 1
LIG1-215ENST00000597901 SPATA31A1Q5TZJ5 1347 aa21.31■■□□□ 1
LIG1-215ENST00000597901 CPDO75976 1380 aa21.31■■□□□ 1
LIG1-215ENST00000597901 ST20-MTHFSA0A0A6YYL1 179 aa21.3■■□□□ 1
LIG1-215ENST00000597901 TMC1Q8TDI8 760 aa21.3■■□□□ 1
LIG1-215ENST00000597901 CRYBG1Q9Y4K1 1723 aa21.29■■□□□ 1
LIG1-215ENST00000597901 SF3B2Q13435 895 aaKnown RBP21.29■■□□□ 1
LIG1-215ENST00000597901 PUS7Q96PZ0 661 aaKnown RBP21.29■■□□□ 1
LIG1-215ENST00000597901 SLC12A5Q9H2X9 1139 aa21.29■■□□□ 1
LIG1-215ENST00000597901 CPSF1Q10570 1443 aaKnown RBP21.29■■□□□ 1
LIG1-215ENST00000597901 ZBTB7CA1YPR0 619 aa21.28■■□□□ 1
LIG1-215ENST00000597901 LARP1Q6PKG0 1096 aaKnown RBP21.28■■□□□ 1
LIG1-215ENST00000597901 TESK2Q96S53 571 aa21.28■■□□□ 1
LIG1-215ENST00000597901 ZRANB1Q9UGI0 708 aa21.28■■□□□ 1
LIG1-215ENST00000597901 KTN1Q86UP2 1357 aaKnown RBP21.27■■□□□ 1
LIG1-215ENST00000597901 USP35Q9P2H5 1018 aa21.27■■□□□ 1
LIG1-215ENST00000597901 TTC21AQ8NDW8 1320 aa21.27■□□□□ 0.99
LIG1-215ENST00000597901 SLC24A1O60721 1099 aa21.26■□□□□ 0.99
LIG1-215ENST00000597901 TIMELESSQ9UNS1 1208 aa21.26■□□□□ 0.99
LIG1-215ENST00000597901 NRAPQ86VF7 1730 aa21.25■□□□□ 0.99
LIG1-215ENST00000597901 KCNH5Q8NCM2 988 aa21.25■□□□□ 0.99
LIG1-215ENST00000597901 CAMTA1Q9Y6Y1 1673 aa21.24■□□□□ 0.99
LIG1-215ENST00000597901 BLMP54132 1417 aaPredicted RBP21.24■□□□□ 0.99
LIG1-215ENST00000597901 FAM182BQ5T319 152 aa21.24■□□□□ 0.99
LIG1-215ENST00000597901 BARGINQ6ZT62 677 aa21.24■□□□□ 0.99
LIG1-215ENST00000597901 HDGFL2Q7Z4V5 671 aaPredicted RBP21.24■□□□□ 0.99
LIG1-215ENST00000597901 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.24■□□□□ 0.99
LIG1-215ENST00000597901 PHRF1Q9P1Y6 1649 aaKnown RBP21.24■□□□□ 0.99
LIG1-215ENST00000597901 ARHGEF25Q86VW2 580 aa21.23■□□□□ 0.99
LIG1-215ENST00000597901 AATKQ6ZMQ8 1374 aa21.23■□□□□ 0.99
LIG1-215ENST00000597901 DEFB132Q7Z7B7 95 aa21.22■□□□□ 0.99
LIG1-215ENST00000597901 TCP11L2Q8N4U5 519 aa21.22■□□□□ 0.99
LIG1-215ENST00000597901 TERF2IPQ9NYB0 399 aa21.22■□□□□ 0.99
LIG1-215ENST00000597901 AXIN2Q9Y2T1 843 aa21.22■□□□□ 0.99
LIG1-215ENST00000597901 CLSPNQ9HAW4 1339 aa21.22■□□□□ 0.99
LIG1-215ENST00000597901 SOX12O15370 315 aa21.21■□□□□ 0.99
LIG1-215ENST00000597901 NRKQ7Z2Y5 1582 aa21.21■□□□□ 0.99
LIG1-215ENST00000597901 THRAP3Q9Y2W1 955 aaKnown RBP21.2■□□□□ 0.98
LIG1-215ENST00000597901 NME9Q86XW9 330 aa21.19■□□□□ 0.98
LIG1-215ENST00000597901 SLIT3O75094 1523 aa21.19■□□□□ 0.98
LIG1-215ENST00000597901 BRWD3Q6RI45 1802 aa21.18■□□□□ 0.98
LIG1-215ENST00000597901 CD163L1Q9NR16 1453 aa21.18■□□□□ 0.98
LIG1-215ENST00000597901 PDE3BQ13370 1112 aa21.17■□□□□ 0.98
LIG1-215ENST00000597901 USP31Q70CQ4 1352 aa21.17■□□□□ 0.98
LIG1-215ENST00000597901 FAM196AQ6ZSG2 479 aa21.16■□□□□ 0.98
LIG1-215ENST00000597901 TOM1L2Q6ZVM7 507 aa21.16■□□□□ 0.98
LIG1-215ENST00000597901 COL5A2P05997 1499 aaPredicted RBP21.15■□□□□ 0.98
LIG1-215ENST00000597901 TMF1P82094 1093 aa21.15■□□□□ 0.98
LIG1-215ENST00000597901 USP47Q96K76 1375 aa21.14■□□□□ 0.98
LIG1-215ENST00000597901 PIK3C2AO00443 1686 aa21.14■□□□□ 0.97
LIG1-215ENST00000597901 LMO7Q8WWI1 1683 aa21.14■□□□□ 0.97
LIG1-215ENST00000597901 CRB1P82279 1406 aa21.13■□□□□ 0.97
LIG1-215ENST00000597901 A0A1W2PP64 1363 aa21.13■□□□□ 0.97
LIG1-215ENST00000597901 BAG6P46379 1132 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms