RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TNS3Q68CZ2 1445 aa20.89■□□□□ 0.93
TRIM28-207ENST00000597136 ZNF316A6NFI3 1004 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-207ENST00000597136 LRP6O75581 1613 aa20.88■□□□□ 0.93
TRIM28-207ENST00000597136 CRYBG1Q9Y4K1 1723 aa20.88■□□□□ 0.93
TRIM28-207ENST00000597136 CPSF1Q10570 1443 aaKnown RBP20.87■□□□□ 0.93
TRIM28-207ENST00000597136 CABLES1Q8TDN4 633 aa20.87■□□□□ 0.93
TRIM28-207ENST00000597136 USP6P35125 1406 aa20.87■□□□□ 0.93
TRIM28-207ENST00000597136 POLR3GLQ9BT43 218 aa20.86■□□□□ 0.93
TRIM28-207ENST00000597136 NRKQ7Z2Y5 1582 aa20.86■□□□□ 0.93
TRIM28-207ENST00000597136 NUTM2GQ5VZR2 741 aa20.85■□□□□ 0.93
TRIM28-207ENST00000597136 SPATA31A6Q5VVP1 1343 aa20.85■□□□□ 0.93
TRIM28-207ENST00000597136 KTN1Q86UP2 1357 aaKnown RBP20.85■□□□□ 0.93
TRIM28-207ENST00000597136 ZNF692Q9BU19 519 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-207ENST00000597136 PIK3C2AO00443 1686 aa20.84■□□□□ 0.93
TRIM28-207ENST00000597136 SSH2Q76I76 1423 aa20.84■□□□□ 0.93
TRIM28-207ENST00000597136 CDCA8Q53HL2 280 aa20.84■□□□□ 0.93
TRIM28-207ENST00000597136 A0A1W2PP64 1363 aa20.82■□□□□ 0.92
TRIM28-207ENST00000597136 ARHGEF10O15013 1369 aa20.82■□□□□ 0.92
TRIM28-207ENST00000597136 ABTB2Q8N961 1025 aa20.81■□□□□ 0.92
TRIM28-207ENST00000597136 PHRF1Q9P1Y6 1649 aaKnown RBP20.81■□□□□ 0.92
TRIM28-207ENST00000597136 TTC21BQ7Z4L5 1316 aa20.81■□□□□ 0.92
TRIM28-207ENST00000597136 ADAMTS2O95450 1211 aa20.8■□□□□ 0.92
TRIM28-207ENST00000597136 HDGFL2Q7Z4V5 671 aaPredicted RBP20.8■□□□□ 0.92
TRIM28-207ENST00000597136 TERF2IPQ9NYB0 399 aa20.8■□□□□ 0.92
TRIM28-207ENST00000597136 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.79■□□□□ 0.92
TRIM28-207ENST00000597136 NINLQ9Y2I6 1382 aa20.79■□□□□ 0.92
TRIM28-207ENST00000597136 ZRANB1Q9UGI0 708 aa20.77■□□□□ 0.92
TRIM28-207ENST00000597136 KIF7Q2M1P5 1343 aa20.77■□□□□ 0.92
TRIM28-207ENST00000597136 MEX3CQ5U5Q3 659 aaKnown RBP20.76■□□□□ 0.91
TRIM28-207ENST00000597136 BRD4O60885 1362 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-207ENST00000597136 ANKRD36BQ8N2N9 1353 aa20.76■□□□□ 0.91
TRIM28-207ENST00000597136 CARD14Q9BXL6 1004 aa20.76■□□□□ 0.91
TRIM28-207ENST00000597136 KIF20BQ96Q89 1820 aa20.76■□□□□ 0.91
TRIM28-207ENST00000597136 NLRP6P59044 892 aa20.75■□□□□ 0.91
TRIM28-207ENST00000597136 RGS17Q9UGC6 210 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-207ENST00000597136 EDC4Q6P2E9 1401 aaKnown RBP20.74■□□□□ 0.91
TRIM28-207ENST00000597136 WASHC2AQ641Q2 1341 aa20.74■□□□□ 0.91
TRIM28-207ENST00000597136 RGPD5Q99666 1765 aa20.74■□□□□ 0.91
TRIM28-207ENST00000597136 NME9Q86XW9 330 aa20.74■□□□□ 0.91
TRIM28-207ENST00000597136 CCDC7Q96M83 1385 aa20.73■□□□□ 0.91
TRIM28-207ENST00000597136 HAP1P54257 671 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-207ENST00000597136 C8orf37Q96NL8 207 aa20.73■□□□□ 0.91
TRIM28-207ENST00000597136 USP54Q70EL1 1684 aa20.73■□□□□ 0.91
TRIM28-207ENST00000597136 TTC21AQ8NDW8 1320 aa20.73■□□□□ 0.91
TRIM28-207ENST00000597136 NLRP13Q86W25 1043 aa20.72■□□□□ 0.91
TRIM28-207ENST00000597136 PLCH1Q4KWH8 1693 aa20.72■□□□□ 0.91
TRIM28-207ENST00000597136 NGLY1Q96IV0 654 aa20.71■□□□□ 0.91
TRIM28-207ENST00000597136 PHF23Q9BUL5 403 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-207ENST00000597136 PANK3Q9H999 370 aa20.7■□□□□ 0.9
TRIM28-207ENST00000597136 USP19O94966 1318 aa20.7■□□□□ 0.9
TRIM28-207ENST00000597136 LTN1O94822 1766 aa20.7■□□□□ 0.9
TRIM28-207ENST00000597136 ZC3H6P61129 1189 aaKnown RBP20.69■□□□□ 0.9
TRIM28-207ENST00000597136 FAM83GA6ND36 823 aa20.68■□□□□ 0.9
TRIM28-207ENST00000597136 GCP02774 474 aa20.68■□□□□ 0.9
TRIM28-207ENST00000597136 AFF2P51816 1311 aa20.68■□□□□ 0.9
TRIM28-207ENST00000597136 MAP2P11137 1827 aaKnown RBP20.68■□□□□ 0.9
TRIM28-207ENST00000597136 SLIT3O75094 1523 aa20.68■□□□□ 0.9
TRIM28-207ENST00000597136 NSD3Q9BZ95 1437 aa20.67■□□□□ 0.9
TRIM28-207ENST00000597136 FYB1O15117 783 aa20.67■□□□□ 0.9
TRIM28-207ENST00000597136 SOX12O15370 315 aa20.67■□□□□ 0.9
TRIM28-207ENST00000597136 COL14A1Q05707 1796 aaKnown RBP20.67■□□□□ 0.9
TRIM28-207ENST00000597136 NWD2Q9ULI1 1742 aa20.66■□□□□ 0.9
TRIM28-207ENST00000597136 USP31Q70CQ4 1352 aa20.66■□□□□ 0.9
TRIM28-207ENST00000597136 COL18A1P39060 1754 aa20.65■□□□□ 0.9
TRIM28-207ENST00000597136 CHRNA2Q15822 529 aa20.65■□□□□ 0.9
TRIM28-207ENST00000597136 KIAA0232Q92628 1395 aa20.65■□□□□ 0.9
TRIM28-207ENST00000597136 POTEAQ6S8J7 498 aa20.64■□□□□ 0.9
TRIM28-207ENST00000597136 GGNBP2Q9H3C7 697 aa20.64■□□□□ 0.9
TRIM28-207ENST00000597136 ANKRD26Q9UPS8 1709 aa20.64■□□□□ 0.9
TRIM28-207ENST00000597136 FNBP4Q8N3X1 1017 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-207ENST00000597136 NRAPQ86VF7 1730 aa20.63■□□□□ 0.89
TRIM28-207ENST00000597136 FBLN1P23142 703 aa20.63■□□□□ 0.89
TRIM28-207ENST00000597136 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.62■□□□□ 0.89
TRIM28-207ENST00000597136 NFAT5O94916 1531 aa20.62■□□□□ 0.89
TRIM28-207ENST00000597136 BCL9LQ86UU0 1499 aa20.62■□□□□ 0.89
TRIM28-207ENST00000597136 OVOS2A0A0J9YW53 1432 aa20.62■□□□□ 0.89
TRIM28-207ENST00000597136 OVOS2Q6IE36 1432 aa20.62■□□□□ 0.89
TRIM28-207ENST00000597136 DDX10Q13206 875 aaKnown RBP20.62■□□□□ 0.89
TRIM28-207ENST00000597136 PRDM11Q9NQV5 511 aa20.62■□□□□ 0.89
TRIM28-207ENST00000597136 SLIT2O94813 1529 aa20.62■□□□□ 0.89
TRIM28-207ENST00000597136 ZBTB7CA1YPR0 619 aa20.61■□□□□ 0.89
TRIM28-207ENST00000597136 USP21Q9UK80 565 aa20.61■□□□□ 0.89
TRIM28-207ENST00000597136 LMO7Q8WWI1 1683 aa20.61■□□□□ 0.89
TRIM28-207ENST00000597136 CAMTA1Q9Y6Y1 1673 aa20.59■□□□□ 0.89
TRIM28-207ENST00000597136 COG3Q96JB2 828 aa20.59■□□□□ 0.89
TRIM28-207ENST00000597136 BTG4Q9NY30 223 aa20.59■□□□□ 0.89
TRIM28-207ENST00000597136 CPDO75976 1380 aa20.58■□□□□ 0.89
TRIM28-207ENST00000597136 ZNF772Q68DY9 489 aaPredicted RBP20.58■□□□□ 0.88
TRIM28-207ENST00000597136 KCNH5Q8NCM2 988 aa20.58■□□□□ 0.88
TRIM28-207ENST00000597136 QTRT2Q9H974 415 aaKnown RBP20.58■□□□□ 0.88
TRIM28-207ENST00000597136 PER1O15534 1290 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-207ENST00000597136 ARHGEF25Q86VW2 580 aa20.57■□□□□ 0.88
TRIM28-207ENST00000597136 CGNL1Q0VF96 1302 aa20.57■□□□□ 0.88
TRIM28-207ENST00000597136 ILDR2Q71H61 639 aa20.55■□□□□ 0.88
TRIM28-207ENST00000597136 UNC5CLQ8IV45 518 aa20.55■□□□□ 0.88
TRIM28-207ENST00000597136 RGPD2P0DJD1 1756 aa20.55■□□□□ 0.88
TRIM28-207ENST00000597136 AXIN2Q9Y2T1 843 aa20.55■□□□□ 0.88
TRIM28-207ENST00000597136 KNSTRNQ9Y448 316 aa20.54■□□□□ 0.88
TRIM28-207ENST00000597136 ATRNO75882 1429 aa20.53■□□□□ 0.88
TRIM28-207ENST00000597136 AATKQ6ZMQ8 1374 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms