RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 BRD4O60885 1362 aaPredicted RBP25.22■■□□□ 1.63
SHKBP1-204ENST00000594862 CARD11Q9BXL7 1154 aa25.22■■□□□ 1.63
SHKBP1-204ENST00000594862 NWD2Q9ULI1 1742 aa25.22■■□□□ 1.63
SHKBP1-204ENST00000594862 SLIT2O94813 1529 aa25.22■■□□□ 1.63
SHKBP1-204ENST00000594862 ACEP12821 1306 aa25.21■■□□□ 1.63
SHKBP1-204ENST00000594862 BCL9LQ86UU0 1499 aa25.21■■□□□ 1.63
SHKBP1-204ENST00000594862 PAK3O75914 559 aaPredicted RBP25.2■■□□□ 1.62
SHKBP1-204ENST00000594862 CABP2Q9NPB3 220 aa25.19■■□□□ 1.62
SHKBP1-204ENST00000594862 CRYBG1Q9Y4K1 1723 aa25.19■■□□□ 1.62
SHKBP1-204ENST00000594862 PLCH1Q4KWH8 1693 aa25.19■■□□□ 1.62
SHKBP1-204ENST00000594862 CABLES1Q8TDN4 633 aa25.17■■□□□ 1.62
SHKBP1-204ENST00000594862 RGS12O14924 1447 aa25.17■■□□□ 1.62
SHKBP1-204ENST00000594862 ATAD2Q6PL18 1390 aa25.17■■□□□ 1.62
SHKBP1-204ENST00000594862 UNC5CLQ8IV45 518 aa25.16■■□□□ 1.62
SHKBP1-204ENST00000594862 TIMELESSQ9UNS1 1208 aa25.16■■□□□ 1.62
SHKBP1-204ENST00000594862 COL14A1Q05707 1796 aaKnown RBP25.15■■□□□ 1.62
SHKBP1-204ENST00000594862 PHRF1Q9P1Y6 1649 aaKnown RBP25.13■■□□□ 1.61
SHKBP1-204ENST00000594862 PCGF6Q9BYE7 350 aa25.12■■□□□ 1.61
SHKBP1-204ENST00000594862 SLC24A1O60721 1099 aa25.11■■□□□ 1.61
SHKBP1-204ENST00000594862 PLEKHG5O94827 1062 aa25.11■■□□□ 1.61
SHKBP1-204ENST00000594862 USP6P35125 1406 aa25.11■■□□□ 1.61
SHKBP1-204ENST00000594862 GJD4Q96KN9 370 aaPredicted RBP25.1■■□□□ 1.61
SHKBP1-204ENST00000594862 CABP1Q9NZU7 370 aa25.1■■□□□ 1.61
SHKBP1-204ENST00000594862 ABTB2Q8N961 1025 aa25.08■■□□□ 1.61
SHKBP1-204ENST00000594862 NRAPQ86VF7 1730 aa25.08■■□□□ 1.61
SHKBP1-204ENST00000594862 SRCAPQ6ZRS2 3230 aa25.07■■□□□ 1.6
SHKBP1-204ENST00000594862 VPS72Q15906 364 aa25.07■■□□□ 1.6
SHKBP1-204ENST00000594862 ZNF692Q9BU19 519 aaPredicted RBP25.07■■□□□ 1.6
SHKBP1-204ENST00000594862 AKAP12Q02952 1782 aa25.07■■□□□ 1.6
SHKBP1-204ENST00000594862 NRKQ7Z2Y5 1582 aa25.05■■□□□ 1.6
SHKBP1-204ENST00000594862 FAM83GA6ND36 823 aa25.05■■□□□ 1.6
SHKBP1-204ENST00000594862 NLRP13Q86W25 1043 aa25.05■■□□□ 1.6
SHKBP1-204ENST00000594862 PRDM11Q9NQV5 511 aa25.05■■□□□ 1.6
SHKBP1-204ENST00000594862 USP19O94966 1318 aa25.05■■□□□ 1.6
SHKBP1-204ENST00000594862 GLI3P10071 1580 aa25.05■■□□□ 1.6
SHKBP1-204ENST00000594862 PUS7Q96PZ0 661 aaKnown RBP25.04■■□□□ 1.6
SHKBP1-204ENST00000594862 SSH2Q76I76 1423 aa25.02■■□□□ 1.6
SHKBP1-204ENST00000594862 EP400Q96L91 3159 aa25.01■■□□□ 1.59
SHKBP1-204ENST00000594862 BTG4Q9NY30 223 aa25.01■■□□□ 1.59
SHKBP1-204ENST00000594862 CPDO75976 1380 aa25.01■■□□□ 1.59
SHKBP1-204ENST00000594862 KIAA0232Q92628 1395 aa25.01■■□□□ 1.59
SHKBP1-204ENST00000594862 CPSF1Q10570 1443 aaKnown RBP25.01■■□□□ 1.59
SHKBP1-204ENST00000594862 NUTM2GQ5VZR2 741 aa25■■□□□ 1.59
SHKBP1-204ENST00000594862 TTC21AQ8NDW8 1320 aa25■■□□□ 1.59
SHKBP1-204ENST00000594862 MON2Q7Z3U7 1717 aa25■■□□□ 1.59
SHKBP1-204ENST00000594862 PIK3C2AO00443 1686 aa24.99■■□□□ 1.59
SHKBP1-204ENST00000594862 NINLQ9Y2I6 1382 aa24.99■■□□□ 1.59
SHKBP1-204ENST00000594862 CCDC9Q9Y3X0 531 aaKnown RBP24.99■■□□□ 1.59
SHKBP1-204ENST00000594862 SLIT3O75094 1523 aa24.98■■□□□ 1.59
SHKBP1-204ENST00000594862 KTN1Q86UP2 1357 aaKnown RBP24.97■■□□□ 1.59
SHKBP1-204ENST00000594862 USP47Q96K76 1375 aa24.97■■□□□ 1.59
SHKBP1-204ENST00000594862 ST20-MTHFSA0A0A6YYL1 179 aa24.96■■□□□ 1.59
SHKBP1-204ENST00000594862 CCER1Q8TC90 406 aaPredicted RBP24.96■■□□□ 1.59
SHKBP1-204ENST00000594862 NLRP6P59044 892 aa24.95■■□□□ 1.58
SHKBP1-204ENST00000594862 TESK2Q96S53 571 aa24.95■■□□□ 1.58
SHKBP1-204ENST00000594862 TTC21BQ7Z4L5 1316 aa24.94■■□□□ 1.58
SHKBP1-204ENST00000594862 GCP02774 474 aa24.94■■□□□ 1.58
SHKBP1-204ENST00000594862 ZC3H6P61129 1189 aaKnown RBP24.94■■□□□ 1.58
SHKBP1-204ENST00000594862 HDGFL2Q7Z4V5 671 aaPredicted RBP24.94■■□□□ 1.58
SHKBP1-204ENST00000594862 ONECUT3O60422 494 aaPredicted RBP24.93■■□□□ 1.58
SHKBP1-204ENST00000594862 TERF2IPQ9NYB0 399 aa24.93■■□□□ 1.58
SHKBP1-204ENST00000594862 LMO7Q8WWI1 1683 aa24.93■■□□□ 1.58
SHKBP1-204ENST00000594862 TMC1Q8TDI8 760 aa24.91■■□□□ 1.58
SHKBP1-204ENST00000594862 USP54Q70EL1 1684 aa24.91■■□□□ 1.58
SHKBP1-204ENST00000594862 CD163L1Q9NR16 1453 aa24.9■■□□□ 1.58
SHKBP1-204ENST00000594862 SPATA31A5Q5VU36 1347 aa24.9■■□□□ 1.58
SHKBP1-204ENST00000594862 SPATA31A7Q8IWB4 1347 aa24.9■■□□□ 1.58
SHKBP1-204ENST00000594862 CHRNA2Q15822 529 aa24.9■■□□□ 1.58
SHKBP1-204ENST00000594862 KCNH5Q8NCM2 988 aa24.9■■□□□ 1.58
SHKBP1-204ENST00000594862 EDC4Q6P2E9 1401 aaKnown RBP24.89■■□□□ 1.58
SHKBP1-204ENST00000594862 TMF1P82094 1093 aa24.89■■□□□ 1.58
SHKBP1-204ENST00000594862 CDCA8Q53HL2 280 aa24.89■■□□□ 1.58
SHKBP1-204ENST00000594862 SEPT12Q8IYM1 358 aa24.89■■□□□ 1.58
SHKBP1-204ENST00000594862 BRWD3Q6RI45 1802 aa24.88■■□□□ 1.57
SHKBP1-204ENST00000594862 CCDC125Q86Z20 511 aa24.87■■□□□ 1.57
SHKBP1-204ENST00000594862 AATKQ6ZMQ8 1374 aa24.87■■□□□ 1.57
SHKBP1-204ENST00000594862 CAMTA1Q9Y6Y1 1673 aa24.86■■□□□ 1.57
SHKBP1-204ENST00000594862 EVA1CP58658 441 aa24.86■■□□□ 1.57
SHKBP1-204ENST00000594862 THSD7AQ9UPZ6 1657 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 A0A1W2PP64 1363 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 USP31Q70CQ4 1352 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 A0A0G2JS52 829 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 MYT1Q01538 1121 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 SLC12A5Q9H2X9 1139 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 STRN4Q9NRL3 753 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 ABCC6O95255 1503 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 SPATA31A1Q5TZJ5 1347 aa24.85■■□□□ 1.57
SHKBP1-204ENST00000594862 COL5A2P05997 1499 aaPredicted RBP24.83■■□□□ 1.57
SHKBP1-204ENST00000594862 FAM98CQ17RN3 349 aaKnown RBP24.83■■□□□ 1.57
SHKBP1-204ENST00000594862 KRT27Q7Z3Y8 459 aa24.82■■□□□ 1.56
SHKBP1-204ENST00000594862 NFAT5O94916 1531 aa24.81■■□□□ 1.56
SHKBP1-204ENST00000594862 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.8■■□□□ 1.56
SHKBP1-204ENST00000594862 ANKRD36BQ8N2N9 1353 aa24.8■■□□□ 1.56
SHKBP1-204ENST00000594862 BLMP54132 1417 aaPredicted RBP24.79■■□□□ 1.56
SHKBP1-204ENST00000594862 THRAP3Q9Y2W1 955 aaKnown RBP24.79■■□□□ 1.56
SHKBP1-204ENST00000594862 CRB1P82279 1406 aa24.78■■□□□ 1.56
SHKBP1-204ENST00000594862 COL18A1P39060 1754 aa24.78■■□□□ 1.56
SHKBP1-204ENST00000594862 BARGINQ6ZT62 677 aa24.78■■□□□ 1.56
SHKBP1-204ENST00000594862 ZBTB7CA1YPR0 619 aa24.77■■□□□ 1.56
SHKBP1-204ENST00000594862 ARHGEF25Q86VW2 580 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms