RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 ARHGEF28Q8N1W1 1705 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-203ENST00000594298 COL14A1Q05707 1796 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-203ENST00000594298 SRCAPQ6ZRS2 3230 aa25.53■■□□□ 1.68
SHKBP1-203ENST00000594298 DEFB132Q7Z7B7 95 aa25.52■■□□□ 1.68
SHKBP1-203ENST00000594298 NUDT16Q96DE0 195 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-203ENST00000594298 PAK3O75914 559 aaPredicted RBP25.51■■□□□ 1.67
SHKBP1-203ENST00000594298 FAM98CQ17RN3 349 aaKnown RBP25.5■■□□□ 1.67
SHKBP1-203ENST00000594298 CRYBG1Q9Y4K1 1723 aa25.49■■□□□ 1.67
SHKBP1-203ENST00000594298 SPATA31A5Q5VU36 1347 aa25.48■■□□□ 1.67
SHKBP1-203ENST00000594298 SPATA31A7Q8IWB4 1347 aa25.48■■□□□ 1.67
SHKBP1-203ENST00000594298 ITSN1Q15811 1721 aa25.48■■□□□ 1.67
SHKBP1-203ENST00000594298 A0A0G2JS52 829 aa25.47■■□□□ 1.67
SHKBP1-203ENST00000594298 MYT1Q01538 1121 aa25.47■■□□□ 1.67
SHKBP1-203ENST00000594298 CDK19Q9BWU1 502 aa25.47■■□□□ 1.67
SHKBP1-203ENST00000594298 POLR3AO14802 1390 aaPredicted RBP25.46■■□□□ 1.67
SHKBP1-203ENST00000594298 PRDM11Q9NQV5 511 aa25.46■■□□□ 1.67
SHKBP1-203ENST00000594298 TRIM26Q12899 539 aaPredicted RBP25.45■■□□□ 1.66
SHKBP1-203ENST00000594298 CCDC61Q9Y6R9 512 aa25.45■■□□□ 1.66
SHKBP1-203ENST00000594298 KIAA1210Q9ULL0 1709 aa25.45■■□□□ 1.66
SHKBP1-203ENST00000594298 PLEKHG3A1L390 1219 aa25.43■■□□□ 1.66
SHKBP1-203ENST00000594298 KIAA0232Q92628 1395 aa25.43■■□□□ 1.66
SHKBP1-203ENST00000594298 ACEP12821 1306 aa25.41■■□□□ 1.66
SHKBP1-203ENST00000594298 BAG6P46379 1132 aa25.41■■□□□ 1.66
SHKBP1-203ENST00000594298 NBPF8Q3BBV2 869 aa25.41■■□□□ 1.66
SHKBP1-203ENST00000594298 TOPAZ1Q8N9V7 1692 aa25.41■■□□□ 1.66
SHKBP1-203ENST00000594298 THSD7AQ9UPZ6 1657 aa25.4■■□□□ 1.66
SHKBP1-203ENST00000594298 NBPF1Q3BBV0 1214 aa25.39■■□□□ 1.66
SHKBP1-203ENST00000594298 SPATA31A1Q5TZJ5 1347 aa25.38■■□□□ 1.65
SHKBP1-203ENST00000594298 PHRF1Q9P1Y6 1649 aaKnown RBP25.38■■□□□ 1.65
SHKBP1-203ENST00000594298 CHRNA2Q15822 529 aa25.37■■□□□ 1.65
SHKBP1-203ENST00000594298 ZC3H6P61129 1189 aaKnown RBP25.35■■□□□ 1.65
SHKBP1-203ENST00000594298 NUTM2GQ5VZR2 741 aa25.34■■□□□ 1.65
SHKBP1-203ENST00000594298 DISP2A7MBM2 1401 aa25.34■■□□□ 1.65
SHKBP1-203ENST00000594298 FAM182BQ5T319 152 aa25.33■■□□□ 1.65
SHKBP1-203ENST00000594298 STRN4Q9NRL3 753 aa25.33■■□□□ 1.65
SHKBP1-203ENST00000594298 USP19O94966 1318 aa25.33■■□□□ 1.64
SHKBP1-203ENST00000594298 CENPJQ9HC77 1338 aaPredicted RBP25.33■■□□□ 1.64
SHKBP1-203ENST00000594298 CPDO75976 1380 aa25.32■■□□□ 1.64
SHKBP1-203ENST00000594298 ABTB2Q8N961 1025 aa25.32■■□□□ 1.64
SHKBP1-203ENST00000594298 RGPD1P0DJD0 1748 aa25.32■■□□□ 1.64
SHKBP1-203ENST00000594298 NRKQ7Z2Y5 1582 aa25.31■■□□□ 1.64
SHKBP1-203ENST00000594298 PPIP5K1Q6PFW1 1433 aa25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 SSH2Q76I76 1423 aa25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 SRPK2P78362 688 aaKnown RBP25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 EN1Q05925 392 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 BARGINQ6ZT62 677 aa25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 BRD4O60885 1362 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 LRP5O75197 1615 aa25.3■■□□□ 1.64
SHKBP1-203ENST00000594298 EVA1CP58658 441 aa25.28■■□□□ 1.64
SHKBP1-203ENST00000594298 FAM196AQ6ZSG2 479 aa25.28■■□□□ 1.64
SHKBP1-203ENST00000594298 CAMTA1Q9Y6Y1 1673 aa25.27■■□□□ 1.64
SHKBP1-203ENST00000594298 NLRP13Q86W25 1043 aa25.27■■□□□ 1.64
SHKBP1-203ENST00000594298 CABP2Q9NPB3 220 aa25.27■■□□□ 1.64
SHKBP1-203ENST00000594298 LMO7Q8WWI1 1683 aa25.26■■□□□ 1.63
SHKBP1-203ENST00000594298 PSDA5PKW4 1024 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-203ENST00000594298 GCP02774 474 aa25.25■■□□□ 1.63
SHKBP1-203ENST00000594298 TNS1Q9HBL0 1735 aaKnown RBP25.24■■□□□ 1.63
SHKBP1-203ENST00000594298 LARP1Q6PKG0 1096 aaKnown RBP25.24■■□□□ 1.63
SHKBP1-203ENST00000594298 USP35Q9P2H5 1018 aa25.24■■□□□ 1.63
SHKBP1-203ENST00000594298 TCP11L2Q8N4U5 519 aa25.23■■□□□ 1.63
SHKBP1-203ENST00000594298 THRAP3Q9Y2W1 955 aaKnown RBP25.23■■□□□ 1.63
SHKBP1-203ENST00000594298 L3MBTL2Q969R5 705 aa25.22■■□□□ 1.63
SHKBP1-203ENST00000594298 USP6P35125 1406 aa25.21■■□□□ 1.63
SHKBP1-203ENST00000594298 TRIM37O94972 964 aa25.21■■□□□ 1.63
SHKBP1-203ENST00000594298 CAMKK2Q96RR4 588 aa25.21■■□□□ 1.63
SHKBP1-203ENST00000594298 CABP1Q9NZU7 370 aa25.21■■□□□ 1.63
SHKBP1-203ENST00000594298 PARD3Q8TEW0 1356 aa25.2■■□□□ 1.63
SHKBP1-203ENST00000594298 QRICH2Q9H0J4 1663 aa25.2■■□□□ 1.63
SHKBP1-203ENST00000594298 PDE3BQ13370 1112 aa25.2■■□□□ 1.62
SHKBP1-203ENST00000594298 EZH2Q15910 746 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-203ENST00000594298 COL5A2P05997 1499 aaPredicted RBP25.19■■□□□ 1.62
SHKBP1-203ENST00000594298 EVC2Q86UK5 1308 aa25.17■■□□□ 1.62
SHKBP1-203ENST00000594298 R3HDM1Q15032 1099 aaKnown RBP25.17■■□□□ 1.62
SHKBP1-203ENST00000594298 APBA3O96018 575 aa25.16■■□□□ 1.62
SHKBP1-203ENST00000594298 NLRP6P59044 892 aa25.16■■□□□ 1.62
SHKBP1-203ENST00000594298 SLIT3O75094 1523 aa25.16■■□□□ 1.62
SHKBP1-203ENST00000594298 AATKQ6ZMQ8 1374 aa25.16■■□□□ 1.62
SHKBP1-203ENST00000594298 CRB1P82279 1406 aa25.14■■□□□ 1.62
SHKBP1-203ENST00000594298 TRPM1Q7Z4N2 1603 aa25.12■■□□□ 1.61
SHKBP1-203ENST00000594298 C11orf95C9JLR9 678 aaPredicted RBP25.12■■□□□ 1.61
SHKBP1-203ENST00000594298 SIN3AQ96ST3 1273 aa25.12■■□□□ 1.61
SHKBP1-203ENST00000594298 ROCK2O75116 1388 aaKnown RBP25.1■■□□□ 1.61
SHKBP1-203ENST00000594298 ZNF692Q9BU19 519 aaPredicted RBP25.1■■□□□ 1.61
SHKBP1-203ENST00000594298 PARP4Q9UKK3 1724 aaKnown RBP25.09■■□□□ 1.61
SHKBP1-203ENST00000594298 PIK3C2AO00443 1686 aa25.08■■□□□ 1.61
SHKBP1-203ENST00000594298 RREB1Q92766 1687 aa25.06■■□□□ 1.6
SHKBP1-203ENST00000594298 TTC21BQ7Z4L5 1316 aa25.06■■□□□ 1.6
SHKBP1-203ENST00000594298 ZBTB7CA1YPR0 619 aa25.05■■□□□ 1.6
SHKBP1-203ENST00000594298 KCNH5Q8NCM2 988 aa25.05■■□□□ 1.6
SHKBP1-203ENST00000594298 TTC21AQ8NDW8 1320 aa25.05■■□□□ 1.6
SHKBP1-203ENST00000594298 OVOS2A0A0G2JMS6 1433 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 OVOS2A0A0J9YW53 1432 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 CPSF1Q10570 1443 aaKnown RBP25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 OVOS2Q6IE36 1432 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 NEUROD1Q13562 356 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 TOM1L2Q6ZVM7 507 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 ARHGEF25Q86VW2 580 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 AXIN2Q9Y2T1 843 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 WDR17Q8IZU2 1322 aa25.04■■□□□ 1.6
SHKBP1-203ENST00000594298 COL18A1P39060 1754 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms