RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CABP1	Q9NZU7	370 aa		13	□□□□□ -0.33
DNMT1-223	ENST00000591239	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.99	□□□□□ -0.33
DNMT1-223	ENST00000591239	ALS2	Q96Q42	1657 aa		12.99	□□□□□ -0.33
DNMT1-223	ENST00000591239	ST20-MTHFS	A0A0A6YYL1	179 aa		12.98	□□□□□ -0.33
DNMT1-223	ENST00000591239	QTRT2	Q9H974	415 aa	Known RBP	12.98	□□□□□ -0.33
DNMT1-223	ENST00000591239	ATAD2	Q6PL18	1390 aa		12.97	□□□□□ -0.33
DNMT1-223	ENST00000591239	USP21	Q9UK80	565 aa		12.97	□□□□□ -0.33
DNMT1-223	ENST00000591239	MARF1	Q9Y4F3	1742 aa	Known RBP	12.96	□□□□□ -0.33
DNMT1-223	ENST00000591239	RXRB	P28702	533 aa		12.96	□□□□□ -0.33
DNMT1-223	ENST00000591239	TESK2	Q96S53	571 aa		12.96	□□□□□ -0.33
DNMT1-223	ENST00000591239	USP47	Q96K76	1375 aa		12.95	□□□□□ -0.34
DNMT1-223	ENST00000591239	SLC24A1	O60721	1099 aa		12.95	□□□□□ -0.34
DNMT1-223	ENST00000591239	NUTM2G	Q5VZR2	741 aa		12.95	□□□□□ -0.34
DNMT1-223	ENST00000591239	ABTB2	Q8N961	1025 aa		12.95	□□□□□ -0.34
DNMT1-223	ENST00000591239	ABCA3	Q99758	1704 aa		12.94	□□□□□ -0.34
DNMT1-223	ENST00000591239	BCL9L	Q86UU0	1499 aa		12.94	□□□□□ -0.34
DNMT1-223	ENST00000591239	ZNF692	Q9BU19	519 aa	Predicted RBP	12.94	□□□□□ -0.34
DNMT1-223	ENST00000591239	TRPC5	Q9UL62	973 aa	Predicted RBP	12.94	□□□□□ -0.34
DNMT1-223	ENST00000591239	USP6	P35125	1406 aa		12.94	□□□□□ -0.34
DNMT1-223	ENST00000591239	BRD4	O60885	1362 aa	Predicted RBP	12.94	□□□□□ -0.34
DNMT1-223	ENST00000591239	FAM83G	A6ND36	823 aa		12.93	□□□□□ -0.34
DNMT1-223	ENST00000591239	RBM6	P78332	1123 aa	Known RBP	12.93	□□□□□ -0.34
DNMT1-223	ENST00000591239	PUS7	Q96PZ0	661 aa	Known RBP	12.93	□□□□□ -0.34
DNMT1-223	ENST00000591239	SLIT2	O94813	1529 aa		12.93	□□□□□ -0.34
DNMT1-223	ENST00000591239	CPSF1	Q10570	1443 aa	Known RBP	12.92	□□□□□ -0.34
DNMT1-223	ENST00000591239	UNC5CL	Q8IV45	518 aa		12.92	□□□□□ -0.34
DNMT1-223	ENST00000591239	ATRN	O75882	1429 aa		12.91	□□□□□ -0.34
DNMT1-223	ENST00000591239	SSH2	Q76I76	1423 aa		12.91	□□□□□ -0.34
DNMT1-223	ENST00000591239	NLRP13	Q86W25	1043 aa		12.91	□□□□□ -0.34
DNMT1-223	ENST00000591239	TMC1	Q8TDI8	760 aa		12.91	□□□□□ -0.34
DNMT1-223	ENST00000591239	SLC12A5	Q9H2X9	1139 aa		12.91	□□□□□ -0.34
DNMT1-223	ENST00000591239	CRYBG1	Q9Y4K1	1723 aa		12.91	□□□□□ -0.34
DNMT1-223	ENST00000591239	KTN1	Q86UP2	1357 aa	Known RBP	12.9	□□□□□ -0.34
DNMT1-223	ENST00000591239	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.9	□□□□□ -0.34
DNMT1-223	ENST00000591239	USP19	O94966	1318 aa		12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	TTC21B	Q7Z4L5	1316 aa		12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	NLRP6	P59044	892 aa		12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	ZC3H6	P61129	1189 aa	Known RBP	12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	TMF1	P82094	1093 aa		12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	PRDM11	Q9NQV5	511 aa		12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	AKAP12	Q02952	1782 aa		12.89	□□□□□ -0.35
DNMT1-223	ENST00000591239	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	GC	P02774	474 aa		12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	GJD4	Q96KN9	370 aa	Predicted RBP	12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	BTG4	Q9NY30	223 aa		12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	KIAA0232	Q92628	1395 aa		12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	CD163L1	Q9NR16	1453 aa		12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	TTC21A	Q8NDW8	1320 aa		12.88	□□□□□ -0.35
DNMT1-223	ENST00000591239	PLCH1	Q4KWH8	1693 aa		12.87	□□□□□ -0.35
DNMT1-223	ENST00000591239	CHRNA2	Q15822	529 aa		12.87	□□□□□ -0.35
DNMT1-223	ENST00000591239	VPS72	Q15906	364 aa		12.87	□□□□□ -0.35
DNMT1-223	ENST00000591239	TERF2IP	Q9NYB0	399 aa		12.87	□□□□□ -0.35
DNMT1-223	ENST00000591239	NWD2	Q9ULI1	1742 aa		12.87	□□□□□ -0.35
DNMT1-223	ENST00000591239	COL14A1	Q05707	1796 aa	Known RBP	12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239	NINL	Q9Y2I6	1382 aa		12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239	NCBP3	Q53F19	620 aa	Known RBP	12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239	CDCA8	Q53HL2	280 aa		12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239	RGS12	O14924	1447 aa		12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239	PIK3C2A	O00443	1686 aa		12.86	□□□□□ -0.35
DNMT1-223	ENST00000591239		A0A1W2PP64	1363 aa		12.85	□□□□□ -0.35
DNMT1-223	ENST00000591239	EP400	Q96L91	3159 aa		12.85	□□□□□ -0.35
DNMT1-223	ENST00000591239	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.85	□□□□□ -0.35
DNMT1-223	ENST00000591239	CCDC9	Q9Y3X0	531 aa	Known RBP	12.85	□□□□□ -0.35
DNMT1-223	ENST00000591239	NRK	Q7Z2Y5	1582 aa		12.85	□□□□□ -0.35
DNMT1-223	ENST00000591239	MON2	Q7Z3U7	1717 aa		12.85	□□□□□ -0.35
DNMT1-223	ENST00000591239	CPD	O75976	1380 aa		12.84	□□□□□ -0.35
DNMT1-223	ENST00000591239	EDC4	Q6P2E9	1401 aa	Known RBP	12.84	□□□□□ -0.35
DNMT1-223	ENST00000591239	HSPA5	P11021	654 aa	Known RBP	12.83	□□□□□ -0.36
DNMT1-223	ENST00000591239	SLIT3	O75094	1523 aa		12.83	□□□□□ -0.36
DNMT1-223	ENST00000591239	NRAP	Q86VF7	1730 aa		12.82	□□□□□ -0.36
DNMT1-223	ENST00000591239	GLI3	P10071	1580 aa		12.82	□□□□□ -0.36
DNMT1-223	ENST00000591239	NME9	Q86XW9	330 aa		12.82	□□□□□ -0.36
DNMT1-223	ENST00000591239	KCNH5	Q8NCM2	988 aa		12.82	□□□□□ -0.36
DNMT1-223	ENST00000591239	ZRANB1	Q9UGI0	708 aa		12.82	□□□□□ -0.36
DNMT1-223	ENST00000591239	ANKRD36B	Q8N2N9	1353 aa		12.81	□□□□□ -0.36
DNMT1-223	ENST00000591239	ZBTB7C	A1YPR0	619 aa		12.81	□□□□□ -0.36
DNMT1-223	ENST00000591239	SOX12	O15370	315 aa		12.81	□□□□□ -0.36
DNMT1-223	ENST00000591239	STRN4	Q9NRL3	753 aa		12.81	□□□□□ -0.36
DNMT1-223	ENST00000591239	USP31	Q70CQ4	1352 aa		12.81	□□□□□ -0.36
DNMT1-223	ENST00000591239	ONECUT3	O60422	494 aa	Predicted RBP	12.8	□□□□□ -0.36
DNMT1-223	ENST00000591239	EVA1C	P58658	441 aa		12.8	□□□□□ -0.36
DNMT1-223	ENST00000591239	SPATA31A5	Q5VU36	1347 aa		12.8	□□□□□ -0.36
DNMT1-223	ENST00000591239	SPATA31A7	Q8IWB4	1347 aa		12.8	□□□□□ -0.36
DNMT1-223	ENST00000591239	CAMTA1	Q9Y6Y1	1673 aa		12.8	□□□□□ -0.36
DNMT1-223	ENST00000591239	ARHGEF25	Q86VW2	580 aa		12.79	□□□□□ -0.36
DNMT1-223	ENST00000591239	SEPT12	Q8IYM1	358 aa		12.79	□□□□□ -0.36
DNMT1-223	ENST00000591239	LMO7	Q8WWI1	1683 aa		12.79	□□□□□ -0.36
DNMT1-223	ENST00000591239	AATK	Q6ZMQ8	1374 aa		12.79	□□□□□ -0.36
DNMT1-223	ENST00000591239	FAM98C	Q17RN3	349 aa	Known RBP	12.78	□□□□□ -0.36
DNMT1-223	ENST00000591239	LARP1	Q6PKG0	1096 aa	Known RBP	12.78	□□□□□ -0.36
DNMT1-223	ENST00000591239	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
DNMT1-223	ENST00000591239	SPATA31A1	Q5TZJ5	1347 aa		12.78	□□□□□ -0.36
DNMT1-223	ENST00000591239	POLR3GL	Q9BT43	218 aa		12.77	□□□□□ -0.37
DNMT1-223	ENST00000591239	AXIN2	Q9Y2T1	843 aa		12.77	□□□□□ -0.37
DNMT1-223	ENST00000591239	NFAT5	O94916	1531 aa		12.77	□□□□□ -0.37
DNMT1-223	ENST00000591239	USP54	Q70EL1	1684 aa		12.77	□□□□□ -0.37
DNMT1-223	ENST00000591239		A0A0G2JS52	829 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms