RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 POLR3AO14802 1390 aaPredicted RBP29.03■■■□□ 2.24
SS18-224ENST00000584083 CDK12Q9NYV4 1490 aaPredicted RBP29.03■■■□□ 2.24
SS18-224ENST00000584083 BCL9LQ86UU0 1499 aa29.02■■■□□ 2.24
SS18-224ENST00000584083 ATRNO75882 1429 aa29■■■□□ 2.23
SS18-224ENST00000584083 CABP1Q9NZU7 370 aa28.98■■■□□ 2.23
SS18-224ENST00000584083 UNC5CLQ8IV45 518 aa28.97■■■□□ 2.23
SS18-224ENST00000584083 SLIT2O94813 1529 aa28.97■■■□□ 2.23
SS18-224ENST00000584083 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.97■■■□□ 2.23
SS18-224ENST00000584083 RGS12O14924 1447 aa28.95■■■□□ 2.23
SS18-224ENST00000584083 NUTM2GQ5VZR2 741 aa28.95■■■□□ 2.22
SS18-224ENST00000584083 PLCH1Q4KWH8 1693 aa28.95■■■□□ 2.22
SS18-224ENST00000584083 FAM83GA6ND36 823 aa28.93■■■□□ 2.22
SS18-224ENST00000584083 CRYBG1Q9Y4K1 1723 aa28.93■■■□□ 2.22
SS18-224ENST00000584083 NWD2Q9ULI1 1742 aa28.92■■■□□ 2.22
SS18-224ENST00000584083 ABTB2Q8N961 1025 aa28.92■■■□□ 2.22
SS18-224ENST00000584083 GJD4Q96KN9 370 aaPredicted RBP28.92■■■□□ 2.22
SS18-224ENST00000584083 CLSPNQ9HAW4 1339 aa28.91■■■□□ 2.22
SS18-224ENST00000584083 SBNO2Q9Y2G9 1366 aa28.9■■■□□ 2.22
SS18-224ENST00000584083 COL14A1Q05707 1796 aaKnown RBP28.88■■■□□ 2.21
SS18-224ENST00000584083 ATAD2Q6PL18 1390 aa28.88■■■□□ 2.21
SS18-224ENST00000584083 PHRF1Q9P1Y6 1649 aaKnown RBP28.87■■■□□ 2.21
SS18-224ENST00000584083 CCDC9Q9Y3X0 531 aaKnown RBP28.87■■■□□ 2.21
SS18-224ENST00000584083 BRD4O60885 1362 aaPredicted RBP28.87■■■□□ 2.21
SS18-224ENST00000584083 USP6P35125 1406 aa28.86■■■□□ 2.21
SS18-224ENST00000584083 PRDM11Q9NQV5 511 aa28.86■■■□□ 2.21
SS18-224ENST00000584083 BTG4Q9NY30 223 aa28.85■■■□□ 2.21
SS18-224ENST00000584083 VPS72Q15906 364 aa28.84■■■□□ 2.21
SS18-224ENST00000584083 NLRP13Q86W25 1043 aa28.84■■■□□ 2.21
SS18-224ENST00000584083 CCER1Q8TC90 406 aaPredicted RBP28.84■■■□□ 2.21
SS18-224ENST00000584083 TIMELESSQ9UNS1 1208 aa28.84■■■□□ 2.21
SS18-224ENST00000584083 ZC3H6P61129 1189 aaKnown RBP28.83■■■□□ 2.21
SS18-224ENST00000584083 UPF1Q92900 1129 aaKnown RBP eCLIP28.82■■■□□ 2.2
SS18-224ENST00000584083 ZNF692Q9BU19 519 aaPredicted RBP28.82■■■□□ 2.2
SS18-224ENST00000584083 KIAA0232Q92628 1395 aa28.82■■■□□ 2.2
SS18-224ENST00000584083 GLI3P10071 1580 aa28.82■■■□□ 2.2
SS18-224ENST00000584083 AKAP12Q02952 1782 aa28.82■■■□□ 2.2
SS18-224ENST00000584083 ST20-MTHFSA0A0A6YYL1 179 aa28.81■■■□□ 2.2
SS18-224ENST00000584083 NRAPQ86VF7 1730 aa28.8■■■□□ 2.2
SS18-224ENST00000584083 NLRP6P59044 892 aa28.79■■■□□ 2.2
SS18-224ENST00000584083 CHRNA2Q15822 529 aa28.79■■■□□ 2.2
SS18-224ENST00000584083 USP19O94966 1318 aa28.78■■■□□ 2.2
SS18-224ENST00000584083 TMC1Q8TDI8 760 aa28.78■■■□□ 2.2
SS18-224ENST00000584083 SSH2Q76I76 1423 aa28.77■■■□□ 2.2
SS18-224ENST00000584083 NRKQ7Z2Y5 1582 aa28.76■■■□□ 2.19
SS18-224ENST00000584083 KTN1Q86UP2 1357 aaKnown RBP28.75■■■□□ 2.19
SS18-224ENST00000584083 TESK2Q96S53 571 aa28.75■■■□□ 2.19
SS18-224ENST00000584083 CPSF1Q10570 1443 aaKnown RBP28.75■■■□□ 2.19
SS18-224ENST00000584083 TTC21BQ7Z4L5 1316 aa28.74■■■□□ 2.19
SS18-224ENST00000584083 SLC24A1O60721 1099 aa28.74■■■□□ 2.19
SS18-224ENST00000584083 GCP02774 474 aa28.74■■■□□ 2.19
SS18-224ENST00000584083 USP47Q96K76 1375 aa28.74■■■□□ 2.19
SS18-224ENST00000584083 PIK3C2AO00443 1686 aa28.74■■■□□ 2.19
SS18-224ENST00000584083 PUS7Q96PZ0 661 aaKnown RBP28.72■■■□□ 2.19
SS18-224ENST00000584083 SLC12A5Q9H2X9 1139 aa28.72■■■□□ 2.19
SS18-224ENST00000584083 MON2Q7Z3U7 1717 aa28.72■■■□□ 2.19
SS18-224ENST00000584083 SEPT12Q8IYM1 358 aa28.71■■■□□ 2.19
SS18-224ENST00000584083 STRN4Q9NRL3 753 aa28.71■■■□□ 2.19
SS18-224ENST00000584083 BRWD3Q6RI45 1802 aa28.71■■■□□ 2.19
SS18-224ENST00000584083 TTC21AQ8NDW8 1320 aa28.7■■■□□ 2.19
SS18-224ENST00000584083 A0A0G2JS52 829 aa28.7■■■□□ 2.18
SS18-224ENST00000584083 MYT1Q01538 1121 aa28.7■■■□□ 2.18
SS18-224ENST00000584083 HDGFL2Q7Z4V5 671 aaPredicted RBP28.7■■■□□ 2.18
SS18-224ENST00000584083 CPDO75976 1380 aa28.7■■■□□ 2.18
SS18-224ENST00000584083 ZBTB7CA1YPR0 619 aa28.69■■■□□ 2.18
SS18-224ENST00000584083 EVA1CP58658 441 aa28.69■■■□□ 2.18
SS18-224ENST00000584083 SPATA31A5Q5VU36 1347 aa28.68■■■□□ 2.18
SS18-224ENST00000584083 SPATA31A7Q8IWB4 1347 aa28.68■■■□□ 2.18
SS18-224ENST00000584083 ONECUT3O60422 494 aaPredicted RBP28.67■■■□□ 2.18
SS18-224ENST00000584083 FAM98CQ17RN3 349 aaKnown RBP28.67■■■□□ 2.18
SS18-224ENST00000584083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.67■■■□□ 2.18
SS18-224ENST00000584083 TERF2IPQ9NYB0 399 aa28.67■■■□□ 2.18
SS18-224ENST00000584083 SLIT3O75094 1523 aa28.67■■■□□ 2.18
SS18-224ENST00000584083 CD163L1Q9NR16 1453 aa28.66■■■□□ 2.18
SS18-224ENST00000584083 TMF1P82094 1093 aa28.65■■■□□ 2.18
SS18-224ENST00000584083 CAMTA1Q9Y6Y1 1673 aa28.64■■■□□ 2.18
SS18-224ENST00000584083 LMO7Q8WWI1 1683 aa28.63■■■□□ 2.17
SS18-224ENST00000584083 SOX12O15370 315 aa28.62■■■□□ 2.17
SS18-224ENST00000584083 KCNH5Q8NCM2 988 aa28.62■■■□□ 2.17
SS18-224ENST00000584083 SPATA31A1Q5TZJ5 1347 aa28.61■■■□□ 2.17
SS18-224ENST00000584083 NINLQ9Y2I6 1382 aa28.61■■■□□ 2.17
SS18-224ENST00000584083 USP35Q9P2H5 1018 aa28.6■■■□□ 2.17
SS18-224ENST00000584083 A0A1W2PP64 1363 aa28.6■■■□□ 2.17
SS18-224ENST00000584083 KRT27Q7Z3Y8 459 aa28.59■■■□□ 2.17
SS18-224ENST00000584083 NME9Q86XW9 330 aa28.59■■■□□ 2.17
SS18-224ENST00000584083 ZRANB1Q9UGI0 708 aa28.59■■■□□ 2.17
SS18-224ENST00000584083 EDC4Q6P2E9 1401 aaKnown RBP28.59■■■□□ 2.17
SS18-224ENST00000584083 LARP1Q6PKG0 1096 aaKnown RBP28.58■■■□□ 2.17
SS18-224ENST00000584083 AATKQ6ZMQ8 1374 aa28.57■■■□□ 2.16
SS18-224ENST00000584083 CDCA8Q53HL2 280 aa28.56■■■□□ 2.16
SS18-224ENST00000584083 USP31Q70CQ4 1352 aa28.55■■■□□ 2.16
SS18-224ENST00000584083 COL5A2P05997 1499 aaPredicted RBP28.54■■■□□ 2.16
SS18-224ENST00000584083 ARHGEF25Q86VW2 580 aa28.54■■■□□ 2.16
SS18-224ENST00000584083 CCDC125Q86Z20 511 aa28.54■■■□□ 2.16
SS18-224ENST00000584083 EP400Q96L91 3159 aa28.54■■■□□ 2.16
SS18-224ENST00000584083 COL18A1P39060 1754 aa28.53■■■□□ 2.16
SS18-224ENST00000584083 THSD7AQ9UPZ6 1657 aa28.52■■■□□ 2.16
SS18-224ENST00000584083 RGPD5Q99666 1765 aa28.52■■■□□ 2.16
SS18-224ENST00000584083 USP54Q70EL1 1684 aa28.51■■■□□ 2.16
SS18-224ENST00000584083 NFAT5O94916 1531 aa28.51■■■□□ 2.15
SS18-224ENST00000584083 TCP11L2Q8N4U5 519 aa28.5■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms