RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 WASLO00401 505 aaPredicted RBP12.44□□□□□ -0.42
SS18-220ENST00000582092 PARD3Q8TEW0 1356 aa12.43□□□□□ -0.42
SS18-220ENST00000582092 KRT28Q7Z3Y7 464 aa12.43□□□□□ -0.42
SS18-220ENST00000582092 RGS17Q9UGC6 210 aaPredicted RBP12.43□□□□□ -0.42
SS18-220ENST00000582092 LRP6O75581 1613 aa12.43□□□□□ -0.42
SS18-220ENST00000582092 PXDNQ92626 1479 aa12.42□□□□□ -0.42
SS18-220ENST00000582092 COL22A1Q8NFW1 1626 aaPredicted RBP12.42□□□□□ -0.42
SS18-220ENST00000582092 HAP1P54257 671 aaPredicted RBP12.42□□□□□ -0.42
SS18-220ENST00000582092 XPCQ01831 940 aaPredicted RBP12.42□□□□□ -0.42
SS18-220ENST00000582092 NGLY1Q96IV0 654 aa12.42□□□□□ -0.42
SS18-220ENST00000582092 CABP2Q9NPB3 220 aa12.42□□□□□ -0.42
SS18-220ENST00000582092 TERF2IPQ9NYB0 399 aa12.42□□□□□ -0.42
SS18-220ENST00000582092 TULP4Q9NRJ4 1543 aa12.42□□□□□ -0.42
SS18-220ENST00000582092 WDR43Q15061 677 aaKnown RBP eCLIP12.41□□□□□ -0.42
SS18-220ENST00000582092 HDGFL2Q7Z4V5 671 aaPredicted RBP12.41□□□□□ -0.42
SS18-220ENST00000582092 PNISRQ8TF01 805 aaKnown RBP12.41□□□□□ -0.42
SS18-220ENST00000582092 C8orf37Q96NL8 207 aa12.41□□□□□ -0.42
SS18-220ENST00000582092 SLC12A5Q9H2X9 1139 aa12.41□□□□□ -0.42
SS18-220ENST00000582092 MARF1Q9Y4F3 1742 aaKnown RBP12.41□□□□□ -0.42
SS18-220ENST00000582092 ATAD2Q6PL18 1390 aa12.41□□□□□ -0.42
SS18-220ENST00000582092 AFF2P51816 1311 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 CGNL1Q0VF96 1302 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 ADAMTS2O95450 1211 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 POTEAQ6S8J7 498 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 MORC1Q86VD1 984 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 NGDNQ8NEJ9 315 aaKnown RBP12.4□□□□□ -0.42
SS18-220ENST00000582092 PMFBP1Q8TBY8 1022 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 CDK19Q9BWU1 502 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 NPC1L1Q9UHC9 1359 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 NINLQ9Y2I6 1382 aa12.4□□□□□ -0.42
SS18-220ENST00000582092 SPATA31A3Q5VYP0 1347 aa12.39□□□□□ -0.43
SS18-220ENST00000582092 AMER1Q5JTC6 1135 aaPredicted RBP12.39□□□□□ -0.43
SS18-220ENST00000582092 LMOD2Q6P5Q4 547 aa12.39□□□□□ -0.43
SS18-220ENST00000582092 USP32Q8NFA0 1604 aa12.39□□□□□ -0.43
SS18-220ENST00000582092 SBNO1A3KN83 1393 aa12.39□□□□□ -0.43
SS18-220ENST00000582092 ARHGEF10O15013 1369 aa12.39□□□□□ -0.43
SS18-220ENST00000582092 ZBED9Q6R2W3 1325 aa12.38□□□□□ -0.43
SS18-220ENST00000582092 TNS3Q68CZ2 1445 aa12.38□□□□□ -0.43
SS18-220ENST00000582092 RXRBP28702 533 aa12.38□□□□□ -0.43
SS18-220ENST00000582092 PPP2R1AP30153 589 aa12.38□□□□□ -0.43
SS18-220ENST00000582092 NUDT16Q96DE0 195 aaKnown RBP12.38□□□□□ -0.43
SS18-220ENST00000582092 CCDC61Q9Y6R9 512 aa12.37□□□□□ -0.43
SS18-220ENST00000582092 CFAP53Q96M91 514 aa12.36□□□□□ -0.43
SS18-220ENST00000582092 QTRT2Q9H974 415 aaKnown RBP12.36□□□□□ -0.43
SS18-220ENST00000582092 NSD3Q9BZ95 1437 aa12.36□□□□□ -0.43
SS18-220ENST00000582092 ANKRD36BQ8N2N9 1353 aa12.35□□□□□ -0.43
SS18-220ENST00000582092 PAK3O75914 559 aaPredicted RBP12.35□□□□□ -0.43
SS18-220ENST00000582092 CARD14Q9BXL6 1004 aa12.35□□□□□ -0.43
SS18-220ENST00000582092 USP21Q9UK80 565 aa12.35□□□□□ -0.43
SS18-220ENST00000582092 PRR36Q9H6K5 1346 aa12.35□□□□□ -0.43
SS18-220ENST00000582092 RBM6P78332 1123 aaKnown RBP12.34□□□□□ -0.43
SS18-220ENST00000582092 PELP1Q8IZL8 1130 aaKnown RBP12.34□□□□□ -0.43
SS18-220ENST00000582092 TRPC5Q9UL62 973 aaPredicted RBP12.34□□□□□ -0.43
SS18-220ENST00000582092 MYOM1P52179 1685 aa12.34□□□□□ -0.43
SS18-220ENST00000582092 ATP7BP35670 1465 aa12.34□□□□□ -0.43
SS18-220ENST00000582092 FNBP4Q8N3X1 1017 aaPredicted RBP12.33□□□□□ -0.44
SS18-220ENST00000582092 TRPM3Q9HCF6 1732 aaPredicted RBP12.33□□□□□ -0.44
SS18-220ENST00000582092 CDK12Q9NYV4 1490 aaPredicted RBP12.33□□□□□ -0.44
SS18-220ENST00000582092 TOPAZ1Q8N9V7 1692 aa12.32□□□□□ -0.44
SS18-220ENST00000582092 NSD2O96028 1365 aa12.32□□□□□ -0.44
SS18-220ENST00000582092 TNNT2P45379 298 aaPredicted RBP12.32□□□□□ -0.44
SS18-220ENST00000582092 CABP1Q9NZU7 370 aa12.32□□□□□ -0.44
SS18-220ENST00000582092 PLEKHG3A1L390 1219 aa12.31□□□□□ -0.44
SS18-220ENST00000582092 ALS2Q96Q42 1657 aa12.31□□□□□ -0.44
SS18-220ENST00000582092 ACEP12821 1306 aa12.31□□□□□ -0.44
SS18-220ENST00000582092 PLEKHG5O94827 1062 aa12.3□□□□□ -0.44
SS18-220ENST00000582092 SALL2Q9Y467 1007 aaPredicted RBP12.3□□□□□ -0.44
SS18-220ENST00000582092 ABCA3Q99758 1704 aa12.3□□□□□ -0.44
SS18-220ENST00000582092 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.3□□□□□ -0.44
SS18-220ENST00000582092 POLR3AO14802 1390 aaPredicted RBP12.3□□□□□ -0.44
SS18-220ENST00000582092 PPIP5K1Q6PFW1 1433 aa12.29□□□□□ -0.44
SS18-220ENST00000582092 NWD2Q9ULI1 1742 aa12.29□□□□□ -0.44
SS18-220ENST00000582092 PDE3BQ13370 1112 aa12.29□□□□□ -0.44
SS18-220ENST00000582092 FKBP8Q14318 412 aa12.29□□□□□ -0.44
SS18-220ENST00000582092 CABLES1Q8TDN4 633 aa12.29□□□□□ -0.44
SS18-220ENST00000582092 INSRP06213 1382 aa12.29□□□□□ -0.44
SS18-220ENST00000582092 UNC5CLQ8IV45 518 aa12.28□□□□□ -0.44
SS18-220ENST00000582092 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
SS18-220ENST00000582092 ADAMTS8Q9UP79 889 aa12.28□□□□□ -0.44
SS18-220ENST00000582092 SUPT16HQ9Y5B9 1047 aaKnown RBP12.28□□□□□ -0.44
SS18-220ENST00000582092 ABTB2Q8N961 1025 aa12.27□□□□□ -0.45
SS18-220ENST00000582092 NUDCQ9Y266 331 aa12.27□□□□□ -0.45
SS18-220ENST00000582092 A0A1W2PP64 1363 aa12.27□□□□□ -0.45
SS18-220ENST00000582092 PLCH1Q4KWH8 1693 aa12.26□□□□□ -0.45
SS18-220ENST00000582092 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.26□□□□□ -0.45
SS18-220ENST00000582092 CCDC9Q9Y3X0 531 aaKnown RBP12.26□□□□□ -0.45
SS18-220ENST00000582092 ATRNO75882 1429 aa12.26□□□□□ -0.45
SS18-220ENST00000582092 SLIT2O94813 1529 aa12.26□□□□□ -0.45
SS18-220ENST00000582092 COL14A1Q05707 1796 aaKnown RBP12.25□□□□□ -0.45
SS18-220ENST00000582092 SENP3-EIF4A1A0A087X0R7 540 aa12.25□□□□□ -0.45
SS18-220ENST00000582092 MTHFSP49914 203 aa12.25□□□□□ -0.45
SS18-220ENST00000582092 GJD4Q96KN9 370 aaPredicted RBP12.25□□□□□ -0.45
SS18-220ENST00000582092 GGNBP2Q9H3C7 697 aa12.25□□□□□ -0.45
SS18-220ENST00000582092 PRDM11Q9NQV5 511 aa12.25□□□□□ -0.45
SS18-220ENST00000582092 BCL9LQ86UU0 1499 aa12.25□□□□□ -0.45
SS18-220ENST00000582092 NGEFQ8N5V2 710 aa12.24□□□□□ -0.45
SS18-220ENST00000582092 AKAP12Q02952 1782 aa12.23□□□□□ -0.45
SS18-220ENST00000582092 CRYBG1Q9Y4K1 1723 aa12.23□□□□□ -0.45
SS18-220ENST00000582092 SMG6Q86US8 1419 aaKnown RBP12.23□□□□□ -0.45
SS18-220ENST00000582092 FYB1O15117 783 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms