RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TRPC5Q9UL62 973 aaPredicted RBP33.95■■■■□ 3.03
SHMT1-206ENST00000579558 CDK12Q9NYV4 1490 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-206ENST00000579558 BCL9LQ86UU0 1499 aa33.93■■■■□ 3.02
SHMT1-206ENST00000579558 CLSPNQ9HAW4 1339 aa33.92■■■■□ 3.02
SHMT1-206ENST00000579558 ATRNO75882 1429 aa33.91■■■■□ 3.02
SHMT1-206ENST00000579558 SLIT2O94813 1529 aa33.89■■■■□ 3.02
SHMT1-206ENST00000579558 SBNO2Q9Y2G9 1366 aa33.89■■■■□ 3.02
SHMT1-206ENST00000579558 CABP1Q9NZU7 370 aa33.89■■■■□ 3.02
SHMT1-206ENST00000579558 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.87■■■■□ 3.01
SHMT1-206ENST00000579558 CRYBG1Q9Y4K1 1723 aa33.87■■■■□ 3.01
SHMT1-206ENST00000579558 PLCH1Q4KWH8 1693 aa33.85■■■■□ 3.01
SHMT1-206ENST00000579558 UNC5CLQ8IV45 518 aa33.85■■■■□ 3.01
SHMT1-206ENST00000579558 RGS12O14924 1447 aa33.85■■■■□ 3.01
SHMT1-206ENST00000579558 NUTM2GQ5VZR2 741 aa33.82■■■■□ 3
SHMT1-206ENST00000579558 ATAD2Q6PL18 1390 aa33.82■■■■□ 3
SHMT1-206ENST00000579558 NWD2Q9ULI1 1742 aa33.82■■■■□ 3
SHMT1-206ENST00000579558 FAM83GA6ND36 823 aa33.81■■■■□ 3
SHMT1-206ENST00000579558 ABTB2Q8N961 1025 aa33.8■■■■□ 3
SHMT1-206ENST00000579558 TIMELESSQ9UNS1 1208 aa33.8■■■■□ 3
SHMT1-206ENST00000579558 USP6P35125 1406 aa33.79■■■■□ 3
SHMT1-206ENST00000579558 PHRF1Q9P1Y6 1649 aaKnown RBP33.79■■■■□ 3
SHMT1-206ENST00000579558 BRD4O60885 1362 aaPredicted RBP33.79■■■■□ 3
SHMT1-206ENST00000579558 CCER1Q8TC90 406 aaPredicted RBP33.77■■■■□ 3
SHMT1-206ENST00000579558 GJD4Q96KN9 370 aaPredicted RBP33.77■■■■□ 3
SHMT1-206ENST00000579558 COL14A1Q05707 1796 aaKnown RBP33.77■■■■□ 3
SHMT1-206ENST00000579558 AKAP12Q02952 1782 aa33.73■■■□□ 2.99
SHMT1-206ENST00000579558 PRDM11Q9NQV5 511 aa33.73■■■□□ 2.99
SHMT1-206ENST00000579558 ST20-MTHFSA0A0A6YYL1 179 aa33.72■■■□□ 2.99
SHMT1-206ENST00000579558 VPS72Q15906 364 aa33.71■■■□□ 2.99
SHMT1-206ENST00000579558 NLRP13Q86W25 1043 aa33.71■■■□□ 2.99
SHMT1-206ENST00000579558 ZNF692Q9BU19 519 aaPredicted RBP33.71■■■□□ 2.99
SHMT1-206ENST00000579558 BTG4Q9NY30 223 aa33.71■■■□□ 2.99
SHMT1-206ENST00000579558 GLI3P10071 1580 aa33.71■■■□□ 2.99
SHMT1-206ENST00000579558 NRAPQ86VF7 1730 aa33.7■■■□□ 2.99
SHMT1-206ENST00000579558 KIAA0232Q92628 1395 aa33.7■■■□□ 2.98
SHMT1-206ENST00000579558 SSH2Q76I76 1423 aa33.7■■■□□ 2.98
SHMT1-206ENST00000579558 NRKQ7Z2Y5 1582 aa33.69■■■□□ 2.98
SHMT1-206ENST00000579558 CCDC9Q9Y3X0 531 aaKnown RBP33.69■■■□□ 2.98
SHMT1-206ENST00000579558 USP19O94966 1318 aa33.69■■■□□ 2.98
SHMT1-206ENST00000579558 ZC3H6P61129 1189 aaKnown RBP33.68■■■□□ 2.98
SHMT1-206ENST00000579558 TESK2Q96S53 571 aa33.68■■■□□ 2.98
SHMT1-206ENST00000579558 USP47Q96K76 1375 aa33.67■■■□□ 2.98
SHMT1-206ENST00000579558 CPSF1Q10570 1443 aaKnown RBP33.67■■■□□ 2.98
SHMT1-206ENST00000579558 TMC1Q8TDI8 760 aa33.65■■■□□ 2.98
SHMT1-206ENST00000579558 PIK3C2AO00443 1686 aa33.64■■■□□ 2.98
SHMT1-206ENST00000579558 KTN1Q86UP2 1357 aaKnown RBP33.64■■■□□ 2.98
SHMT1-206ENST00000579558 NLRP6P59044 892 aa33.64■■■□□ 2.98
SHMT1-206ENST00000579558 CHRNA2Q15822 529 aa33.64■■■□□ 2.98
SHMT1-206ENST00000579558 UPF1Q92900 1129 aaKnown RBP eCLIP33.64■■■□□ 2.98
SHMT1-206ENST00000579558 TTC21BQ7Z4L5 1316 aa33.63■■■□□ 2.97
SHMT1-206ENST00000579558 SLC24A1O60721 1099 aa33.63■■■□□ 2.97
SHMT1-206ENST00000579558 PUS7Q96PZ0 661 aaKnown RBP33.63■■■□□ 2.97
SHMT1-206ENST00000579558 MON2Q7Z3U7 1717 aa33.62■■■□□ 2.97
SHMT1-206ENST00000579558 GCP02774 474 aa33.61■■■□□ 2.97
SHMT1-206ENST00000579558 TTC21AQ8NDW8 1320 aa33.6■■■□□ 2.97
SHMT1-206ENST00000579558 SLC12A5Q9H2X9 1139 aa33.59■■■□□ 2.97
SHMT1-206ENST00000579558 CPDO75976 1380 aa33.59■■■□□ 2.97
SHMT1-206ENST00000579558 CD163L1Q9NR16 1453 aa33.58■■■□□ 2.97
SHMT1-206ENST00000579558 SLIT3O75094 1523 aa33.58■■■□□ 2.97
SHMT1-206ENST00000579558 HDGFL2Q7Z4V5 671 aaPredicted RBP33.57■■■□□ 2.96
SHMT1-206ENST00000579558 TMF1P82094 1093 aa33.53■■■□□ 2.96
SHMT1-206ENST00000579558 SEPT12Q8IYM1 358 aa33.53■■■□□ 2.96
SHMT1-206ENST00000579558 STRN4Q9NRL3 753 aa33.53■■■□□ 2.96
SHMT1-206ENST00000579558 TERF2IPQ9NYB0 399 aa33.53■■■□□ 2.96
SHMT1-206ENST00000579558 NINLQ9Y2I6 1382 aa33.52■■■□□ 2.96
SHMT1-206ENST00000579558 SPATA31A5Q5VU36 1347 aa33.52■■■□□ 2.96
SHMT1-206ENST00000579558 SPATA31A7Q8IWB4 1347 aa33.52■■■□□ 2.96
SHMT1-206ENST00000579558 LMO7Q8WWI1 1683 aa33.52■■■□□ 2.96
SHMT1-206ENST00000579558 ONECUT3O60422 494 aaPredicted RBP33.51■■■□□ 2.95
SHMT1-206ENST00000579558 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.51■■■□□ 2.95
SHMT1-206ENST00000579558 BRWD3Q6RI45 1802 aa33.51■■■□□ 2.95
SHMT1-206ENST00000579558 A0A1W2PP64 1363 aa33.5■■■□□ 2.95
SHMT1-206ENST00000579558 CAMTA1Q9Y6Y1 1673 aa33.5■■■□□ 2.95
SHMT1-206ENST00000579558 ZBTB7CA1YPR0 619 aa33.5■■■□□ 2.95
SHMT1-206ENST00000579558 A0A0G2JS52 829 aa33.49■■■□□ 2.95
SHMT1-206ENST00000579558 MYT1Q01538 1121 aa33.49■■■□□ 2.95
SHMT1-206ENST00000579558 FAM98CQ17RN3 349 aaKnown RBP33.49■■■□□ 2.95
SHMT1-206ENST00000579558 EDC4Q6P2E9 1401 aaKnown RBP33.48■■■□□ 2.95
SHMT1-206ENST00000579558 EVA1CP58658 441 aa33.48■■■□□ 2.95
SHMT1-206ENST00000579558 KCNH5Q8NCM2 988 aa33.46■■■□□ 2.95
SHMT1-206ENST00000579558 SPATA31A1Q5TZJ5 1347 aa33.45■■■□□ 2.95
SHMT1-206ENST00000579558 SOX12O15370 315 aa33.44■■■□□ 2.94
SHMT1-206ENST00000579558 NME9Q86XW9 330 aa33.44■■■□□ 2.94
SHMT1-206ENST00000579558 ZRANB1Q9UGI0 708 aa33.43■■■□□ 2.94
SHMT1-206ENST00000579558 AATKQ6ZMQ8 1374 aa33.43■■■□□ 2.94
SHMT1-206ENST00000579558 USP31Q70CQ4 1352 aa33.43■■■□□ 2.94
SHMT1-206ENST00000579558 USP54Q70EL1 1684 aa33.42■■■□□ 2.94
SHMT1-206ENST00000579558 CDCA8Q53HL2 280 aa33.42■■■□□ 2.94
SHMT1-206ENST00000579558 COL5A2P05997 1499 aaPredicted RBP33.4■■■□□ 2.94
SHMT1-206ENST00000579558 LARP1Q6PKG0 1096 aaKnown RBP33.4■■■□□ 2.94
SHMT1-206ENST00000579558 KRT27Q7Z3Y8 459 aa33.4■■■□□ 2.94
SHMT1-206ENST00000579558 NFAT5O94916 1531 aa33.39■■■□□ 2.94
SHMT1-206ENST00000579558 THSD7AQ9UPZ6 1657 aa33.39■■■□□ 2.94
SHMT1-206ENST00000579558 ANKRD36BQ8N2N9 1353 aa33.38■■■□□ 2.93
SHMT1-206ENST00000579558 ARHGEF25Q86VW2 580 aa33.38■■■□□ 2.93
SHMT1-206ENST00000579558 USP35Q9P2H5 1018 aa33.38■■■□□ 2.93
SHMT1-206ENST00000579558 COL18A1P39060 1754 aa33.38■■■□□ 2.93
SHMT1-206ENST00000579558 EP400Q96L91 3159 aa33.35■■■□□ 2.93
SHMT1-206ENST00000579558 EIF4G2P78344 907 aaKnown RBP eCLIP33.32■■■□□ 2.92
SHMT1-206ENST00000579558 AXIN2Q9Y2T1 843 aa33.32■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms