RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 FKBPLQ9UIM3 349 aa11.35□□□□□ -0.59
NUP88-213ENST00000576862 GPR37L1O60883 481 aa11.34□□□□□ -0.59
NUP88-213ENST00000576862 ZNF697Q5TEC3 545 aa11.34□□□□□ -0.59
NUP88-213ENST00000576862 ZNF511Q8NB15 262 aa11.34□□□□□ -0.59
NUP88-213ENST00000576862 WNT7BP56706 349 aa11.33□□□□□ -0.6
NUP88-213ENST00000576862 ARMC2Q8NEN0 867 aa11.33□□□□□ -0.6
NUP88-213ENST00000576862 GTF3C3Q9Y5Q9 886 aa11.33□□□□□ -0.6
NUP88-213ENST00000576862 FLIIQ13045 1269 aa11.32□□□□□ -0.6
NUP88-213ENST00000576862 TRIM67Q6ZTA4 783 aa11.31□□□□□ -0.6
NUP88-213ENST00000576862 PKD2L1Q9P0L9 805 aa11.31□□□□□ -0.6
NUP88-213ENST00000576862 NBPF14Q5TI25 921 aa11.3□□□□□ -0.6
NUP88-213ENST00000576862 FOXJ1Q92949 421 aa11.3□□□□□ -0.6
NUP88-213ENST00000576862 NDUFB9Q9Y6M9 179 aa11.3□□□□□ -0.6
NUP88-213ENST00000576862 GDF9O60383 454 aa11.29□□□□□ -0.6
NUP88-213ENST00000576862 C4orf48Q5BLP8 95 aa11.29□□□□□ -0.6
NUP88-213ENST00000576862 RC3H1Q5TC82 1133 aaKnown RBP11.29□□□□□ -0.6
NUP88-213ENST00000576862 SH3BP5LQ7L8J4 393 aa11.29□□□□□ -0.6
NUP88-213ENST00000576862 GPKOWQ92917 476 aaPredicted RBP eCLIP11.29□□□□□ -0.6
NUP88-213ENST00000576862 TBC1D2BQ9UPU7 963 aa11.29□□□□□ -0.6
NUP88-213ENST00000576862 ZC3H4Q9UPT8 1303 aaKnown RBP11.29□□□□□ -0.6
NUP88-213ENST00000576862 APBB1O00213 710 aa11.28□□□□□ -0.6
NUP88-213ENST00000576862 PDXDC2PQ6P474 469 aa11.28□□□□□ -0.6
NUP88-213ENST00000576862 SH3RF1Q7Z6J0 888 aa11.28□□□□□ -0.6
NUP88-213ENST00000576862 OCSTAMPQ9BR26 566 aa11.28□□□□□ -0.6
NUP88-213ENST00000576862 WNT7AO00755 349 aa11.27□□□□□ -0.61
NUP88-213ENST00000576862 FOXC1Q12948 553 aa11.26□□□□□ -0.61
NUP88-213ENST00000576862 POM121Q96HA1 1249 aa11.26□□□□□ -0.61
NUP88-213ENST00000576862 GDPD2Q9HCC8 539 aa11.26□□□□□ -0.61
NUP88-213ENST00000576862 COG6Q9Y2V7 657 aa11.26□□□□□ -0.61
NUP88-213ENST00000576862 PNMA1Q8ND90 353 aa11.25□□□□□ -0.61
NUP88-213ENST00000576862 MRGPRX2Q96LB1 330 aa11.25□□□□□ -0.61
NUP88-213ENST00000576862 PRR20EP86478 221 aa11.24□□□□□ -0.61
NUP88-213ENST00000576862 PRR20CP86479 221 aa11.24□□□□□ -0.61
NUP88-213ENST00000576862 PRR20DP86480 221 aa11.24□□□□□ -0.61
NUP88-213ENST00000576862 PRR20BP86481 221 aa11.24□□□□□ -0.61
NUP88-213ENST00000576862 PRR20AP86496 221 aa11.24□□□□□ -0.61
NUP88-213ENST00000576862 BPHLQ86WA6 291 aaPredicted RBP11.24□□□□□ -0.61
NUP88-213ENST00000576862 TNFRSF10AO00220 468 aa11.23□□□□□ -0.61
NUP88-213ENST00000576862 SIAH2O43255 324 aa11.23□□□□□ -0.61
NUP88-213ENST00000576862 IRF5Q13568 498 aa11.23□□□□□ -0.61
NUP88-213ENST00000576862 EHBP1Q8NDI1 1231 aa11.23□□□□□ -0.61
NUP88-213ENST00000576862 GPSM3Q9Y4H4 160 aa11.23□□□□□ -0.61
NUP88-213ENST00000576862 UBTFP17480 764 aaKnown RBP11.22□□□□□ -0.61
NUP88-213ENST00000576862 VARSP26640 1264 aaKnown RBP11.22□□□□□ -0.61
NUP88-213ENST00000576862 AGERQ15109 404 aa11.22□□□□□ -0.61
NUP88-213ENST00000576862 C1QTNF2Q9BXJ5 285 aa11.22□□□□□ -0.61
NUP88-213ENST00000576862 PTK2Q05397 1052 aa11.21□□□□□ -0.61
NUP88-213ENST00000576862 ARHGAP9Q9BRR9 750 aa11.21□□□□□ -0.61
NUP88-213ENST00000576862 PRM3Q9NNZ6 103 aa11.21□□□□□ -0.61
NUP88-213ENST00000576862 MAGEB6P1A0A0J9YX57 407 aa11.2□□□□□ -0.62
NUP88-213ENST00000576862 FBXO45P0C2W1 286 aa11.2□□□□□ -0.62
NUP88-213ENST00000576862 ABL2P42684 1182 aa11.2□□□□□ -0.62
NUP88-213ENST00000576862 CARD14Q9BXL6 1004 aa11.2□□□□□ -0.62
NUP88-213ENST00000576862 PDZRN3Q9UPQ7 1066 aa11.2□□□□□ -0.62
NUP88-213ENST00000576862 ZBBXA8MT70 800 aa11.19□□□□□ -0.62
NUP88-213ENST00000576862 ERFEQ4G0M1 354 aa11.19□□□□□ -0.62
NUP88-213ENST00000576862 CLUAP1Q96AJ1 413 aa11.19□□□□□ -0.62
NUP88-213ENST00000576862 TOR4AQ9NXH8 423 aa11.19□□□□□ -0.62
NUP88-213ENST00000576862 ADAM32Q8TC27 787 aa11.18□□□□□ -0.62
NUP88-213ENST00000576862 FAM174AQ8TBP5 190 aa11.17□□□□□ -0.62
NUP88-213ENST00000576862 TLL2Q9Y6L7 1015 aa11.17□□□□□ -0.62
NUP88-213ENST00000576862 NR1H3Q13133 447 aa11.16□□□□□ -0.62
NUP88-213ENST00000576862 ZBTB33Q86T24 672 aa11.16□□□□□ -0.62
NUP88-213ENST00000576862 TRMT44Q8IYL2 757 aaKnown RBP11.16□□□□□ -0.62
NUP88-213ENST00000576862 SNIP1Q8TAD8 396 aaKnown RBP11.16□□□□□ -0.62
NUP88-213ENST00000576862 RAD21O60216 631 aa11.15□□□□□ -0.62
NUP88-213ENST00000576862 GFRA3O60609 400 aa11.15□□□□□ -0.62
NUP88-213ENST00000576862 MPNDQ8N594 471 aa11.15□□□□□ -0.62
NUP88-213ENST00000576862 CYP4X1Q8N118 509 aa11.14□□□□□ -0.63
NUP88-213ENST00000576862 CDK15Q96Q40 435 aa11.14□□□□□ -0.63
NUP88-213ENST00000576862 J3QL48 77 aa11.13□□□□□ -0.63
NUP88-213ENST00000576862 TTC24A2A3L6 582 aaPredicted RBP11.12□□□□□ -0.63
NUP88-213ENST00000576862 NRG2O14511 850 aaPredicted RBP11.12□□□□□ -0.63
NUP88-213ENST00000576862 VAC14Q08AM6 782 aa11.12□□□□□ -0.63
NUP88-213ENST00000576862 FNBP4Q8N3X1 1017 aaPredicted RBP11.12□□□□□ -0.63
NUP88-213ENST00000576862 IRX2Q9BZI1 471 aaPredicted RBP11.12□□□□□ -0.63
NUP88-213ENST00000576862 A6NJR5 290 aa11.11□□□□□ -0.63
NUP88-213ENST00000576862 ALDH1A1P00352 501 aa11.11□□□□□ -0.63
NUP88-213ENST00000576862 SMPD1P17405 629 aa11.11□□□□□ -0.63
NUP88-213ENST00000576862 MAP4K5Q9Y4K4 846 aa11.11□□□□□ -0.63
NUP88-213ENST00000576862 GRM5P41594 1212 aa11.09□□□□□ -0.63
NUP88-213ENST00000576862 ARID5BQ14865 1188 aa11.09□□□□□ -0.63
NUP88-213ENST00000576862 WASHC4Q2M389 1173 aa11.09□□□□□ -0.63
NUP88-213ENST00000576862 PROSER2Q86WR7 435 aaPredicted RBP11.09□□□□□ -0.63
NUP88-213ENST00000576862 SLC10A4Q96EP9 437 aa11.09□□□□□ -0.63
NUP88-213ENST00000576862 ADH1CP00326 375 aa11.08□□□□□ -0.64
NUP88-213ENST00000576862 LAPTM4AQ15012 233 aa11.08□□□□□ -0.64
NUP88-213ENST00000576862 PCDHB9Q9Y5E1 797 aa11.08□□□□□ -0.64
NUP88-213ENST00000576862 VASH1Q7L8A9 365 aaPredicted RBP11.07□□□□□ -0.64
NUP88-213ENST00000576862 DZIP3Q86Y13 1208 aaKnown RBP11.07□□□□□ -0.64
NUP88-213ENST00000576862 FAM187AA6NFU0 413 aa11.06□□□□□ -0.64
NUP88-213ENST00000576862 POM121CA8CG34 1229 aa11.05□□□□□ -0.64
NUP88-213ENST00000576862 NR3C2P08235 984 aa11.05□□□□□ -0.64
NUP88-213ENST00000576862 KCTD15Q96SI1 283 aaPredicted RBP11.05□□□□□ -0.64
NUP88-213ENST00000576862 CDV3Q9UKY7 258 aaKnown RBP11.05□□□□□ -0.64
NUP88-213ENST00000576862 ZNF330Q9Y3S2 320 aaPredicted RBP11.05□□□□□ -0.64
NUP88-213ENST00000576862 FSHRP23945 695 aa11.04□□□□□ -0.64
NUP88-213ENST00000576862 EIF4G2P78344 907 aaKnown RBP eCLIP11.04□□□□□ -0.64
NUP88-213ENST00000576862 WWC1Q8IX03 1113 aa11.04□□□□□ -0.64
NUP88-213ENST00000576862 HPS1Q92902 700 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms