RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NGDNQ8NEJ9 315 aaKnown RBP30.78■■■□□ 2.52
VPS53-216ENST00000574029 BTG4Q9NY30 223 aa30.77■■■□□ 2.52
VPS53-216ENST00000574029 KIAA1210Q9ULL0 1709 aa30.76■■■□□ 2.51
VPS53-216ENST00000574029 KRT27Q7Z3Y8 459 aa30.75■■■□□ 2.51
VPS53-216ENST00000574029 NUDT16Q96DE0 195 aaKnown RBP30.74■■■□□ 2.51
VPS53-216ENST00000574029 PAK3O75914 559 aaPredicted RBP30.72■■■□□ 2.51
VPS53-216ENST00000574029 DEFB132Q7Z7B7 95 aa30.71■■■□□ 2.51
VPS53-216ENST00000574029 SF3B2Q13435 895 aaKnown RBP30.7■■■□□ 2.51
VPS53-216ENST00000574029 TOPAZ1Q8N9V7 1692 aa30.7■■■□□ 2.5
VPS53-216ENST00000574029 FAM98CQ17RN3 349 aaKnown RBP30.69■■■□□ 2.5
VPS53-216ENST00000574029 CDK19Q9BWU1 502 aa30.69■■■□□ 2.5
VPS53-216ENST00000574029 PHRF1Q9P1Y6 1649 aaKnown RBP30.67■■■□□ 2.5
VPS53-216ENST00000574029 SPATA31A5Q5VU36 1347 aa30.67■■■□□ 2.5
VPS53-216ENST00000574029 SPATA31A7Q8IWB4 1347 aa30.67■■■□□ 2.5
VPS53-216ENST00000574029 A0A0G2JS52 829 aa30.66■■■□□ 2.5
VPS53-216ENST00000574029 MYT1Q01538 1121 aa30.66■■■□□ 2.5
VPS53-216ENST00000574029 POLR3AO14802 1390 aaPredicted RBP30.66■■■□□ 2.5
VPS53-216ENST00000574029 PRDM11Q9NQV5 511 aa30.65■■■□□ 2.5
VPS53-216ENST00000574029 THSD7AQ9UPZ6 1657 aa30.63■■■□□ 2.49
VPS53-216ENST00000574029 CCDC61Q9Y6R9 512 aa30.62■■■□□ 2.49
VPS53-216ENST00000574029 ACEP12821 1306 aa30.61■■■□□ 2.49
VPS53-216ENST00000574029 KIAA0232Q92628 1395 aa30.61■■■□□ 2.49
VPS53-216ENST00000574029 SRCAPQ6ZRS2 3230 aa30.61■■■□□ 2.49
VPS53-216ENST00000574029 PLEKHG3A1L390 1219 aa30.6■■■□□ 2.49
VPS53-216ENST00000574029 NBPF1Q3BBV0 1214 aa30.6■■■□□ 2.49
VPS53-216ENST00000574029 NBPF8Q3BBV2 869 aa30.59■■■□□ 2.49
VPS53-216ENST00000574029 RGPD1P0DJD0 1748 aa30.58■■■□□ 2.49
VPS53-216ENST00000574029 BAG6P46379 1132 aa30.56■■■□□ 2.48
VPS53-216ENST00000574029 SPATA31A1Q5TZJ5 1347 aa30.55■■■□□ 2.48
VPS53-216ENST00000574029 CHRNA2Q15822 529 aa30.55■■■□□ 2.48
VPS53-216ENST00000574029 NUTM2GQ5VZR2 741 aa30.55■■■□□ 2.48
VPS53-216ENST00000574029 NRKQ7Z2Y5 1582 aa30.54■■■□□ 2.48
VPS53-216ENST00000574029 ZC3H6P61129 1189 aaKnown RBP30.53■■■□□ 2.48
VPS53-216ENST00000574029 FAM182BQ5T319 152 aa30.51■■■□□ 2.47
VPS53-216ENST00000574029 CENPJQ9HC77 1338 aaPredicted RBP30.5■■■□□ 2.47
VPS53-216ENST00000574029 STRN4Q9NRL3 753 aa30.5■■■□□ 2.47
VPS53-216ENST00000574029 ABTB2Q8N961 1025 aa30.49■■■□□ 2.47
VPS53-216ENST00000574029 TNS1Q9HBL0 1735 aaKnown RBP30.49■■■□□ 2.47
VPS53-216ENST00000574029 QRICH2Q9H0J4 1663 aa30.49■■■□□ 2.47
VPS53-216ENST00000574029 PPIP5K1Q6PFW1 1433 aa30.48■■■□□ 2.47
VPS53-216ENST00000574029 SRPK2P78362 688 aaKnown RBP30.48■■■□□ 2.47
VPS53-216ENST00000574029 USP19O94966 1318 aa30.47■■■□□ 2.47
VPS53-216ENST00000574029 LRP5O75197 1615 aa30.47■■■□□ 2.47
VPS53-216ENST00000574029 LMO7Q8WWI1 1683 aa30.47■■■□□ 2.47
VPS53-216ENST00000574029 CPDO75976 1380 aa30.47■■■□□ 2.47
VPS53-216ENST00000574029 DISP2A7MBM2 1401 aa30.47■■■□□ 2.47
VPS53-216ENST00000574029 CAMTA1Q9Y6Y1 1673 aa30.46■■■□□ 2.47
VPS53-216ENST00000574029 SSH2Q76I76 1423 aa30.46■■■□□ 2.47
VPS53-216ENST00000574029 EN1Q05925 392 aaPredicted RBP30.45■■■□□ 2.47
VPS53-216ENST00000574029 CABP2Q9NPB3 220 aa30.44■■■□□ 2.46
VPS53-216ENST00000574029 BRD4O60885 1362 aaPredicted RBP30.43■■■□□ 2.46
VPS53-216ENST00000574029 EVA1CP58658 441 aa30.43■■■□□ 2.46
VPS53-216ENST00000574029 BARGINQ6ZT62 677 aa30.43■■■□□ 2.46
VPS53-216ENST00000574029 NLRP13Q86W25 1043 aa30.42■■■□□ 2.46
VPS53-216ENST00000574029 L3MBTL2Q969R5 705 aa30.41■■■□□ 2.46
VPS53-216ENST00000574029 PSDA5PKW4 1024 aaPredicted RBP30.4■■■□□ 2.46
VPS53-216ENST00000574029 FAM196AQ6ZSG2 479 aa30.4■■■□□ 2.46
VPS53-216ENST00000574029 USP35Q9P2H5 1018 aa30.4■■■□□ 2.46
VPS53-216ENST00000574029 GCP02774 474 aa30.39■■■□□ 2.46
VPS53-216ENST00000574029 LARP1Q6PKG0 1096 aaKnown RBP30.39■■■□□ 2.46
VPS53-216ENST00000574029 TRPM1Q7Z4N2 1603 aa30.39■■■□□ 2.46
VPS53-216ENST00000574029 USP6P35125 1406 aa30.37■■■□□ 2.45
VPS53-216ENST00000574029 CABP1Q9NZU7 370 aa30.36■■■□□ 2.45
VPS53-216ENST00000574029 TRIM37O94972 964 aa30.35■■■□□ 2.45
VPS53-216ENST00000574029 TCP11L2Q8N4U5 519 aa30.35■■■□□ 2.45
VPS53-216ENST00000574029 SLIT3O75094 1523 aa30.33■■■□□ 2.45
VPS53-216ENST00000574029 COL5A2P05997 1499 aaPredicted RBP30.33■■■□□ 2.45
VPS53-216ENST00000574029 PDE3BQ13370 1112 aa30.33■■■□□ 2.45
VPS53-216ENST00000574029 EZH2Q15910 746 aaKnown RBP30.33■■■□□ 2.45
VPS53-216ENST00000574029 THRAP3Q9Y2W1 955 aaKnown RBP30.33■■■□□ 2.45
VPS53-216ENST00000574029 CAMKK2Q96RR4 588 aa30.32■■■□□ 2.44
VPS53-216ENST00000574029 PARP4Q9UKK3 1724 aaKnown RBP30.31■■■□□ 2.44
VPS53-216ENST00000574029 SIN3AQ96ST3 1273 aa30.31■■■□□ 2.44
VPS53-216ENST00000574029 EVC2Q86UK5 1308 aa30.3■■■□□ 2.44
VPS53-216ENST00000574029 PIK3C2AO00443 1686 aa30.3■■■□□ 2.44
VPS53-216ENST00000574029 NLRP6P59044 892 aa30.29■■■□□ 2.44
VPS53-216ENST00000574029 R3HDM1Q15032 1099 aaKnown RBP30.29■■■□□ 2.44
VPS53-216ENST00000574029 PARD3Q8TEW0 1356 aa30.28■■■□□ 2.44
VPS53-216ENST00000574029 APBA3O96018 575 aa30.28■■■□□ 2.44
VPS53-216ENST00000574029 CRB1P82279 1406 aa30.27■■■□□ 2.44
VPS53-216ENST00000574029 AATKQ6ZMQ8 1374 aa30.27■■■□□ 2.44
VPS53-216ENST00000574029 RREB1Q92766 1687 aa30.27■■■□□ 2.44
VPS53-216ENST00000574029 COL18A1P39060 1754 aa30.26■■■□□ 2.43
VPS53-216ENST00000574029 AKAP12Q02952 1782 aa30.25■■■□□ 2.43
VPS53-216ENST00000574029 ROCK2O75116 1388 aaKnown RBP30.25■■■□□ 2.43
VPS53-216ENST00000574029 ZBTB7CA1YPR0 619 aa30.21■■■□□ 2.43
VPS53-216ENST00000574029 NEUROD1Q13562 356 aa30.21■■■□□ 2.43
VPS53-216ENST00000574029 ZNF692Q9BU19 519 aaPredicted RBP30.21■■■□□ 2.43
VPS53-216ENST00000574029 NUP188Q5SRE5 1749 aa30.21■■■□□ 2.43
VPS53-216ENST00000574029 PEAK1Q9H792 1746 aa30.19■■■□□ 2.42
VPS53-216ENST00000574029 LRRC37A3O60309 1634 aa30.18■■■□□ 2.42
VPS53-216ENST00000574029 C11orf95C9JLR9 678 aaPredicted RBP30.18■■■□□ 2.42
VPS53-216ENST00000574029 TTC21BQ7Z4L5 1316 aa30.18■■■□□ 2.42
VPS53-216ENST00000574029 WNK3Q9BYP7 1800 aa30.17■■■□□ 2.42
VPS53-216ENST00000574029 CPSF1Q10570 1443 aaKnown RBP30.16■■■□□ 2.42
VPS53-216ENST00000574029 AXIN2Q9Y2T1 843 aa30.15■■■□□ 2.42
VPS53-216ENST00000574029 OVOS2A0A0G2JMS6 1433 aa30.14■■■□□ 2.42
VPS53-216ENST00000574029 OVOS2A0A0J9YW53 1432 aa30.14■■■□□ 2.42
VPS53-216ENST00000574029 OVOS2Q6IE36 1432 aa30.14■■■□□ 2.42
VPS53-216ENST00000574029 TOM1L2Q6ZVM7 507 aa30.14■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms