RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PRDM11Q9NQV5 511 aa24.22■■□□□ 1.47
CLK3-223ENST00000568488 GPRASP1Q5JY77 1395 aa24.21■■□□□ 1.47
CLK3-223ENST00000568488 TNS1Q9HBL0 1735 aaKnown RBP24.21■■□□□ 1.47
CLK3-223ENST00000568488 DCAF8L1A6NGE4 600 aa24.2■■□□□ 1.46
CLK3-223ENST00000568488 PAK3O75914 559 aaPredicted RBP24.2■■□□□ 1.46
CLK3-223ENST00000568488 PPP1R1BQ9UD71 204 aaPredicted RBP24.2■■□□□ 1.46
CLK3-223ENST00000568488 STRN4Q9NRL3 753 aa24.19■■□□□ 1.46
CLK3-223ENST00000568488 NBPF8Q3BBV2 869 aa24.18■■□□□ 1.46
CLK3-223ENST00000568488 NBPF14Q5TI25 921 aa24.18■■□□□ 1.46
CLK3-223ENST00000568488 HIRIP3Q9BW71 556 aaPredicted RBP24.17■■□□□ 1.46
CLK3-223ENST00000568488 ANKARQ7Z5J8 1434 aa24.17■■□□□ 1.46
CLK3-223ENST00000568488 ADGRB2O60241 1585 aa24.16■■□□□ 1.46
CLK3-223ENST00000568488 SPATA31A1Q5TZJ5 1347 aa24.16■■□□□ 1.46
CLK3-223ENST00000568488 ACIN1Q9UKV3 1341 aaKnown RBP24.16■■□□□ 1.46
CLK3-223ENST00000568488 THSD7AQ9UPZ6 1657 aa24.16■■□□□ 1.46
CLK3-223ENST00000568488 USP35Q9P2H5 1018 aa24.16■■□□□ 1.46
CLK3-223ENST00000568488 CHRNA2Q15822 529 aa24.15■■□□□ 1.46
CLK3-223ENST00000568488 NGDNQ8NEJ9 315 aaKnown RBP24.15■■□□□ 1.46
CLK3-223ENST00000568488 PARD3Q8TEW0 1356 aa24.15■■□□□ 1.46
CLK3-223ENST00000568488 PDE3BQ13370 1112 aa24.14■■□□□ 1.45
CLK3-223ENST00000568488 TRPM3Q9HCF6 1732 aaPredicted RBP24.13■■□□□ 1.45
CLK3-223ENST00000568488 MPHOSPH9Q99550 1183 aa24.13■■□□□ 1.45
CLK3-223ENST00000568488 SPON1Q9HCB6 807 aa24.12■■□□□ 1.45
CLK3-223ENST00000568488 ALS2Q96Q42 1657 aa24.11■■□□□ 1.45
CLK3-223ENST00000568488 MINK1Q8N4C8 1332 aaPredicted RBP24.1■■□□□ 1.45
CLK3-223ENST00000568488 EVA1CP58658 441 aa24.1■■□□□ 1.45
CLK3-223ENST00000568488 TRAK1Q9UPV9 953 aa24.1■■□□□ 1.45
CLK3-223ENST00000568488 KIAA0232Q92628 1395 aa24.1■■□□□ 1.45
CLK3-223ENST00000568488 PRR36Q9H6K5 1346 aa24.1■■□□□ 1.45
CLK3-223ENST00000568488 KCNQ2O43526 872 aa24.09■■□□□ 1.45
CLK3-223ENST00000568488 ZC3H6P61129 1189 aaKnown RBP24.09■■□□□ 1.45
CLK3-223ENST00000568488 EIF3AQ14152 1382 aaKnown RBP24.05■■□□□ 1.44
CLK3-223ENST00000568488 WASLO00401 505 aaPredicted RBP24.05■■□□□ 1.44
CLK3-223ENST00000568488 NUTM2GQ5VZR2 741 aa24.05■■□□□ 1.44
CLK3-223ENST00000568488 DLC1Q96QB1 1528 aa24.04■■□□□ 1.44
CLK3-223ENST00000568488 BARGINQ6ZT62 677 aa24.03■■□□□ 1.44
CLK3-223ENST00000568488 NINLQ9Y2I6 1382 aa24.03■■□□□ 1.44
CLK3-223ENST00000568488 RREB1Q92766 1687 aa24.02■■□□□ 1.44
CLK3-223ENST00000568488 NUP188Q5SRE5 1749 aa24.02■■□□□ 1.44
CLK3-223ENST00000568488 CRYBG1Q9Y4K1 1723 aa24.01■■□□□ 1.43
CLK3-223ENST00000568488 TULP4Q9NRJ4 1543 aa24■■□□□ 1.43
CLK3-223ENST00000568488 LARP1Q6PKG0 1096 aaKnown RBP24■■□□□ 1.43
CLK3-223ENST00000568488 TCP11L2Q8N4U5 519 aa23.99■■□□□ 1.43
CLK3-223ENST00000568488 SSH2Q76I76 1423 aa23.98■■□□□ 1.43
CLK3-223ENST00000568488 NUDT16Q96DE0 195 aaKnown RBP23.95■■□□□ 1.42
CLK3-223ENST00000568488 CAMTA1Q9Y6Y1 1673 aa23.93■■□□□ 1.42
CLK3-223ENST00000568488 KDM2AQ9Y2K7 1162 aa23.93■■□□□ 1.42
CLK3-223ENST00000568488 PHRF1Q9P1Y6 1649 aaKnown RBP23.92■■□□□ 1.42
CLK3-223ENST00000568488 ZNF784Q8NCA9 323 aaPredicted RBP23.92■■□□□ 1.42
CLK3-223ENST00000568488 ADGRB1O14514 1584 aa23.91■■□□□ 1.42
CLK3-223ENST00000568488 THRAP3Q9Y2W1 955 aaKnown RBP23.91■■□□□ 1.42
CLK3-223ENST00000568488 ABTB2Q8N961 1025 aa23.9■■□□□ 1.42
CLK3-223ENST00000568488 ATP7BP35670 1465 aa23.89■■□□□ 1.42
CLK3-223ENST00000568488 SENP3-EIF4A1A0A087X0R7 540 aa23.89■■□□□ 1.41
CLK3-223ENST00000568488 C11orf95C9JLR9 678 aaPredicted RBP23.89■■□□□ 1.41
CLK3-223ENST00000568488 ZBTB7AO95365 584 aa23.89■■□□□ 1.41
CLK3-223ENST00000568488 BCL11BQ9C0K0 894 aaPredicted RBP23.88■■□□□ 1.41
CLK3-223ENST00000568488 PDGFDQ9GZP0 370 aaPredicted RBP23.88■■□□□ 1.41
CLK3-223ENST00000568488 ANO8Q9HCE9 1232 aaPredicted RBP23.88■■□□□ 1.41
CLK3-223ENST00000568488 ACEP12821 1306 aa23.87■■□□□ 1.41
CLK3-223ENST00000568488 PLSCR1O15162 318 aa23.87■■□□□ 1.41
CLK3-223ENST00000568488 CDK19Q9BWU1 502 aa23.87■■□□□ 1.41
CLK3-223ENST00000568488 ATF5Q9Y2D1 282 aaPredicted RBP23.87■■□□□ 1.41
CLK3-223ENST00000568488 ZBTB7CA1YPR0 619 aa23.86■■□□□ 1.41
CLK3-223ENST00000568488 DCAF11Q8TEB1 546 aa23.85■■□□□ 1.41
CLK3-223ENST00000568488 ITSN1Q15811 1721 aa23.84■■□□□ 1.41
CLK3-223ENST00000568488 OVOS2A0A0G2JMS6 1433 aa23.84■■□□□ 1.41
CLK3-223ENST00000568488 OVOS2A0A0J9YW53 1432 aa23.84■■□□□ 1.41
CLK3-223ENST00000568488 OVOS2Q6IE36 1432 aa23.84■■□□□ 1.41
CLK3-223ENST00000568488 NRKQ7Z2Y5 1582 aa23.83■■□□□ 1.41
CLK3-223ENST00000568488 CPDO75976 1380 aa23.83■■□□□ 1.41
CLK3-223ENST00000568488 GCP02774 474 aa23.82■■□□□ 1.4
CLK3-223ENST00000568488 DDB1Q16531 1140 aa23.82■■□□□ 1.4
CLK3-223ENST00000568488 PTF1AQ7RTS3 328 aa23.82■■□□□ 1.4
CLK3-223ENST00000568488 PTGER2P43116 358 aa23.81■■□□□ 1.4
CLK3-223ENST00000568488 NLRP13Q86W25 1043 aa23.81■■□□□ 1.4
CLK3-223ENST00000568488 CCDC61Q9Y6R9 512 aa23.81■■□□□ 1.4
CLK3-223ENST00000568488 POLR3AO14802 1390 aaPredicted RBP23.79■■□□□ 1.4
CLK3-223ENST00000568488 PARP4Q9UKK3 1724 aaKnown RBP23.79■■□□□ 1.4
CLK3-223ENST00000568488 C1QTNF8P60827 252 aa23.79■■□□□ 1.4
CLK3-223ENST00000568488 PROM2Q8N271 834 aa23.79■■□□□ 1.4
CLK3-223ENST00000568488 FHDC1Q9C0D6 1143 aaPredicted RBP23.79■■□□□ 1.4
CLK3-223ENST00000568488 CRB1P82279 1406 aa23.78■■□□□ 1.4
CLK3-223ENST00000568488 SYT17Q9BSW7 474 aa23.78■■□□□ 1.4
CLK3-223ENST00000568488 STK32BQ9NY57 414 aa23.78■■□□□ 1.4
CLK3-223ENST00000568488 COL5A2P05997 1499 aaPredicted RBP23.78■■□□□ 1.4
CLK3-223ENST00000568488 LMO7Q8WWI1 1683 aa23.78■■□□□ 1.4
CLK3-223ENST00000568488 USP19O94966 1318 aa23.78■■□□□ 1.4
CLK3-223ENST00000568488 CASZ1Q86V15 1759 aa23.78■■□□□ 1.4
CLK3-223ENST00000568488 PLEKHG3A1L390 1219 aa23.77■■□□□ 1.4
CLK3-223ENST00000568488 TOM1L2Q6ZVM7 507 aa23.76■■□□□ 1.39
CLK3-223ENST00000568488 UTRNP46939 3433 aa23.76■■□□□ 1.39
CLK3-223ENST00000568488 MYOM1P52179 1685 aa23.75■■□□□ 1.39
CLK3-223ENST00000568488 PEAK1Q9H792 1746 aa23.73■■□□□ 1.39
CLK3-223ENST00000568488 TXNRD1Q16881 649 aa23.73■■□□□ 1.39
CLK3-223ENST00000568488 RGPD3A6NKT7 1758 aaPredicted RBP23.73■■□□□ 1.39
CLK3-223ENST00000568488 RGPD4Q7Z3J3 1758 aa23.73■■□□□ 1.39
CLK3-223ENST00000568488 SLC15A2Q16348 729 aa23.72■■□□□ 1.39
CLK3-223ENST00000568488 MARCH10Q8NA82 808 aaPredicted RBP23.72■■□□□ 1.39
CLK3-223ENST00000568488 SBF2Q86WG5 1849 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms