RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 PNPLA6Q8IY17 1366 aa23.73■■□□□ 1.39
SMPD3-211ENST00000568373 CCDC27Q2M243 656 aa23.72■■□□□ 1.39
SMPD3-211ENST00000568373 RRP7AQ9Y3A4 280 aaKnown RBP23.72■■□□□ 1.39
SMPD3-211ENST00000568373 MON2Q7Z3U7 1717 aa23.72■■□□□ 1.39
SMPD3-211ENST00000568373 NEUROD2Q15784 382 aa23.71■■□□□ 1.39
SMPD3-211ENST00000568373 THEMISQ8N1K5 641 aaPredicted RBP23.71■■□□□ 1.39
SMPD3-211ENST00000568373 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.71■■□□□ 1.39
SMPD3-211ENST00000568373 PTPRUQ92729 1446 aa23.7■■□□□ 1.38
SMPD3-211ENST00000568373 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.7■■□□□ 1.38
SMPD3-211ENST00000568373 SLC26A8Q96RN1 970 aa23.7■■□□□ 1.38
SMPD3-211ENST00000568373 CRBNQ96SW2 442 aa23.7■■□□□ 1.38
SMPD3-211ENST00000568373 KDM4FA0A1W2PPD8 638 aa23.69■■□□□ 1.38
SMPD3-211ENST00000568373 AKAP12Q02952 1782 aa23.69■■□□□ 1.38
SMPD3-211ENST00000568373 WDR63Q8IWG1 891 aa23.69■■□□□ 1.38
SMPD3-211ENST00000568373 PRR36Q9H6K5 1346 aa23.69■■□□□ 1.38
SMPD3-211ENST00000568373 ITSN1Q15811 1721 aa23.68■■□□□ 1.38
SMPD3-211ENST00000568373 U2SURPO15042 1029 aaKnown RBP23.68■■□□□ 1.38
SMPD3-211ENST00000568373 NCKAP5LQ9HCH0 1330 aa23.68■■□□□ 1.38
SMPD3-211ENST00000568373 TBX22Q9Y458 520 aa23.68■■□□□ 1.38
SMPD3-211ENST00000568373 DIAPH1O60610 1272 aaKnown RBP23.67■■□□□ 1.38
SMPD3-211ENST00000568373 C20orf194Q5TEA3 1177 aa23.67■■□□□ 1.38
SMPD3-211ENST00000568373 DIP2AQ14689 1571 aa23.67■■□□□ 1.38
SMPD3-211ENST00000568373 PLEKHF1Q96S99 279 aa23.66■■□□□ 1.38
SMPD3-211ENST00000568373 ZNF692Q9BU19 519 aaPredicted RBP23.65■■□□□ 1.38
SMPD3-211ENST00000568373 POLKQ9UBT6 870 aa23.65■■□□□ 1.38
SMPD3-211ENST00000568373 MAP2P11137 1827 aaKnown RBP23.64■■□□□ 1.38
SMPD3-211ENST00000568373 NME9Q86XW9 330 aa23.64■■□□□ 1.38
SMPD3-211ENST00000568373 TOPAZ1Q8N9V7 1692 aa23.64■■□□□ 1.38
SMPD3-211ENST00000568373 PTCH1Q13635 1447 aa23.64■■□□□ 1.37
SMPD3-211ENST00000568373 AMOTL2Q9Y2J4 779 aa23.63■■□□□ 1.37
SMPD3-211ENST00000568373 MYT1Q01538 1121 aa23.63■■□□□ 1.37
SMPD3-211ENST00000568373 CEP170BQ9Y4F5 1589 aaPredicted RBP23.62■■□□□ 1.37
SMPD3-211ENST00000568373 AATKQ6ZMQ8 1374 aa23.61■■□□□ 1.37
SMPD3-211ENST00000568373 MAPK8IP3Q9UPT6 1336 aa23.6■■□□□ 1.37
SMPD3-211ENST00000568373 BCAR3O75815 825 aa23.6■■□□□ 1.37
SMPD3-211ENST00000568373 FBLN1P23142 703 aa23.6■■□□□ 1.37
SMPD3-211ENST00000568373 PNNQ9H307 717 aaKnown RBP23.6■■□□□ 1.37
SMPD3-211ENST00000568373 COG3Q96JB2 828 aa23.6■■□□□ 1.37
SMPD3-211ENST00000568373 TMPOP42166 694 aaKnown RBP23.59■■□□□ 1.37
SMPD3-211ENST00000568373 PLEKHG3A1L390 1219 aa23.58■■□□□ 1.37
SMPD3-211ENST00000568373 PPM1GO15355 546 aaPredicted RBP23.58■■□□□ 1.37
SMPD3-211ENST00000568373 ZRANB1Q9UGI0 708 aa23.58■■□□□ 1.37
SMPD3-211ENST00000568373 CDK12Q9NYV4 1490 aaPredicted RBP23.58■■□□□ 1.37
SMPD3-211ENST00000568373 NRKQ7Z2Y5 1582 aa23.58■■□□□ 1.36
SMPD3-211ENST00000568373 XRN1Q8IZH2 1706 aaKnown RBP23.57■■□□□ 1.36
SMPD3-211ENST00000568373 MYH16Q9H6N6 1097 aa23.57■■□□□ 1.36
SMPD3-211ENST00000568373 FCHSD2O94868 740 aa23.56■■□□□ 1.36
SMPD3-211ENST00000568373 EMILIN1Q9Y6C2 1016 aa23.56■■□□□ 1.36
SMPD3-211ENST00000568373 ACEP12821 1306 aa23.56■■□□□ 1.36
SMPD3-211ENST00000568373 LRRC7Q96NW7 1537 aa23.55■■□□□ 1.36
SMPD3-211ENST00000568373 TRIM35Q9UPQ4 493 aa23.54■■□□□ 1.36
SMPD3-211ENST00000568373 NUTM2FA1L443 756 aa23.53■■□□□ 1.36
SMPD3-211ENST00000568373 USP6P35125 1406 aa23.53■■□□□ 1.36
SMPD3-211ENST00000568373 TTC21BQ7Z4L5 1316 aa23.53■■□□□ 1.36
SMPD3-211ENST00000568373 PIK3R4Q99570 1358 aa23.53■■□□□ 1.36
SMPD3-211ENST00000568373 RSPH6AQ9H0K4 717 aa23.52■■□□□ 1.36
SMPD3-211ENST00000568373 RARSP54136 660 aaKnown RBP23.52■■□□□ 1.35
SMPD3-211ENST00000568373 ZNF142P52746 1687 aaPredicted RBP23.51■■□□□ 1.35
SMPD3-211ENST00000568373 IL13P35225 146 aa23.5■■□□□ 1.35
SMPD3-211ENST00000568373 PDE3AQ14432 1141 aa23.5■■□□□ 1.35
SMPD3-211ENST00000568373 IL16Q14005 1332 aa23.5■■□□□ 1.35
SMPD3-211ENST00000568373 RIPK4P57078 832 aa23.5■■□□□ 1.35
SMPD3-211ENST00000568373 OVOS2A0A0J9YW53 1432 aa23.49■■□□□ 1.35
SMPD3-211ENST00000568373 OVOS2Q6IE36 1432 aa23.49■■□□□ 1.35
SMPD3-211ENST00000568373 PRKAR2BP31323 418 aa23.49■■□□□ 1.35
SMPD3-211ENST00000568373 FANCIQ9NVI1 1328 aa23.49■■□□□ 1.35
SMPD3-211ENST00000568373 RRS1Q15050 365 aaKnown RBP23.48■■□□□ 1.35
SMPD3-211ENST00000568373 SSH2Q76I76 1423 aa23.48■■□□□ 1.35
SMPD3-211ENST00000568373 KDM2BQ8NHM5 1336 aa23.47■■□□□ 1.35
SMPD3-211ENST00000568373 NEFMP07197 916 aa23.47■■□□□ 1.35
SMPD3-211ENST00000568373 KCNA6P17658 529 aa23.47■■□□□ 1.35
SMPD3-211ENST00000568373 CT47B1P0C2W7 299 aaPredicted RBP23.46■■□□□ 1.35
SMPD3-211ENST00000568373 CANXP27824 592 aaKnown RBP23.46■■□□□ 1.35
SMPD3-211ENST00000568373 NALCNQ8IZF0 1738 aa23.46■■□□□ 1.35
SMPD3-211ENST00000568373 TCERG1O14776 1098 aaKnown RBP23.45■■□□□ 1.35
SMPD3-211ENST00000568373 ANKLE2Q86XL3 938 aa23.45■■□□□ 1.34
SMPD3-211ENST00000568373 RGPD8O14715 1765 aaPredicted RBP23.45■■□□□ 1.34
SMPD3-211ENST00000568373 HMOX1P09601 288 aa23.44■■□□□ 1.34
SMPD3-211ENST00000568373 TSR2Q969E8 191 aaKnown RBP23.44■■□□□ 1.34
SMPD3-211ENST00000568373 SETD1BQ9UPS6 1966 aaKnown RBP23.44■■□□□ 1.34
SMPD3-211ENST00000568373 CENPQQ7L2Z9 268 aaPredicted RBP23.44■■□□□ 1.34
SMPD3-211ENST00000568373 ANKARQ7Z5J8 1434 aa23.43■■□□□ 1.34
SMPD3-211ENST00000568373 TTC21AQ8NDW8 1320 aa23.43■■□□□ 1.34
SMPD3-211ENST00000568373 PMFBP1Q8TBY8 1022 aa23.42■■□□□ 1.34
SMPD3-211ENST00000568373 FRAT1Q92837 279 aaPredicted RBP23.42■■□□□ 1.34
SMPD3-211ENST00000568373 USP31Q70CQ4 1352 aa23.42■■□□□ 1.34
SMPD3-211ENST00000568373 NFE2L2Q16236 605 aa23.41■■□□□ 1.34
SMPD3-211ENST00000568373 PHACTR3Q96KR7 559 aa23.41■■□□□ 1.34
SMPD3-211ENST00000568373 CHD2O14647 1828 aaKnown RBP23.4■■□□□ 1.34
SMPD3-211ENST00000568373 EXOSC9Q06265 439 aaKnown RBP23.4■■□□□ 1.34
SMPD3-211ENST00000568373 PANK1Q8TE04 598 aa23.4■■□□□ 1.34
SMPD3-211ENST00000568373 FMN2Q9NZ56 1722 aa23.39■■□□□ 1.34
SMPD3-211ENST00000568373 NGDNQ8NEJ9 315 aaKnown RBP23.39■■□□□ 1.34
SMPD3-211ENST00000568373 BCL2L13Q9BXK5 485 aa23.39■■□□□ 1.34
SMPD3-211ENST00000568373 MS4A1P11836 297 aa23.39■■□□□ 1.33
SMPD3-211ENST00000568373 COG6Q9Y2V7 657 aa23.37■■□□□ 1.33
SMPD3-211ENST00000568373 PEAK1Q9H792 1746 aa23.36■■□□□ 1.33
SMPD3-211ENST00000568373 HSPA2P54652 639 aa23.35■■□□□ 1.33
SMPD3-211ENST00000568373 EIF4A2Q14240 407 aaKnown RBP23.35■■□□□ 1.33
SMPD3-211ENST00000568373 CLUAP1Q96AJ1 413 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms