RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 BLMP54132 1417 aaPredicted RBP24.83■■□□□ 1.57
CLN3-216ENST00000565316 NRAPQ86VF7 1730 aa24.83■■□□□ 1.57
CLN3-216ENST00000565316 COL14A1Q05707 1796 aaKnown RBP24.83■■□□□ 1.57
CLN3-216ENST00000565316 SRCAPQ6ZRS2 3230 aa24.83■■□□□ 1.56
CLN3-216ENST00000565316 PAK3O75914 559 aaPredicted RBP24.83■■□□□ 1.56
CLN3-216ENST00000565316 POLR3AO14802 1390 aaPredicted RBP24.82■■□□□ 1.56
CLN3-216ENST00000565316 CRYBG1Q9Y4K1 1723 aa24.82■■□□□ 1.56
CLN3-216ENST00000565316 BRWD3Q6RI45 1802 aa24.82■■□□□ 1.56
CLN3-216ENST00000565316 CCDC61Q9Y6R9 512 aa24.82■■□□□ 1.56
CLN3-216ENST00000565316 PLEKHG3A1L390 1219 aa24.81■■□□□ 1.56
CLN3-216ENST00000565316 TOPAZ1Q8N9V7 1692 aa24.79■■□□□ 1.56
CLN3-216ENST00000565316 NBPF8Q3BBV2 869 aa24.79■■□□□ 1.56
CLN3-216ENST00000565316 KRT27Q7Z3Y8 459 aa24.79■■□□□ 1.56
CLN3-216ENST00000565316 ZRANB1Q9UGI0 708 aa24.79■■□□□ 1.56
CLN3-216ENST00000565316 ACEP12821 1306 aa24.78■■□□□ 1.56
CLN3-216ENST00000565316 SPATA31A5Q5VU36 1347 aa24.76■■□□□ 1.55
CLN3-216ENST00000565316 SPATA31A7Q8IWB4 1347 aa24.76■■□□□ 1.55
CLN3-216ENST00000565316 PRDM11Q9NQV5 511 aa24.76■■□□□ 1.55
CLN3-216ENST00000565316 CENPJQ9HC77 1338 aaPredicted RBP24.75■■□□□ 1.55
CLN3-216ENST00000565316 FAM98CQ17RN3 349 aaKnown RBP24.75■■□□□ 1.55
CLN3-216ENST00000565316 L3MBTL2Q969R5 705 aa24.74■■□□□ 1.55
CLN3-216ENST00000565316 KIAA0232Q92628 1395 aa24.73■■□□□ 1.55
CLN3-216ENST00000565316 PHRF1Q9P1Y6 1649 aaKnown RBP24.7■■□□□ 1.55
CLN3-216ENST00000565316 SF3B2Q13435 895 aaKnown RBP24.7■■□□□ 1.54
CLN3-216ENST00000565316 NUTM2GQ5VZR2 741 aa24.7■■□□□ 1.54
CLN3-216ENST00000565316 DEFB132Q7Z7B7 95 aa24.7■■□□□ 1.54
CLN3-216ENST00000565316 SRPK2P78362 688 aaKnown RBP24.69■■□□□ 1.54
CLN3-216ENST00000565316 PPIP5K1Q6PFW1 1433 aa24.68■■□□□ 1.54
CLN3-216ENST00000565316 A0A0G2JS52 829 aa24.68■■□□□ 1.54
CLN3-216ENST00000565316 MYT1Q01538 1121 aa24.68■■□□□ 1.54
CLN3-216ENST00000565316 CHRNA2Q15822 529 aa24.68■■□□□ 1.54
CLN3-216ENST00000565316 ZC3H6P61129 1189 aaKnown RBP24.67■■□□□ 1.54
CLN3-216ENST00000565316 ABTB2Q8N961 1025 aa24.67■■□□□ 1.54
CLN3-216ENST00000565316 CABP2Q9NPB3 220 aa24.67■■□□□ 1.54
CLN3-216ENST00000565316 THSD7AQ9UPZ6 1657 aa24.67■■□□□ 1.54
CLN3-216ENST00000565316 USP19O94966 1318 aa24.67■■□□□ 1.54
CLN3-216ENST00000565316 SPATA31A1Q5TZJ5 1347 aa24.67■■□□□ 1.54
CLN3-216ENST00000565316 SIN3AQ96ST3 1273 aa24.66■■□□□ 1.54
CLN3-216ENST00000565316 BRD4O60885 1362 aaPredicted RBP24.66■■□□□ 1.54
CLN3-216ENST00000565316 CPDO75976 1380 aa24.64■■□□□ 1.54
CLN3-216ENST00000565316 QRICH2Q9H0J4 1663 aa24.63■■□□□ 1.53
CLN3-216ENST00000565316 NRKQ7Z2Y5 1582 aa24.63■■□□□ 1.53
CLN3-216ENST00000565316 NLRP13Q86W25 1043 aa24.61■■□□□ 1.53
CLN3-216ENST00000565316 STRN4Q9NRL3 753 aa24.61■■□□□ 1.53
CLN3-216ENST00000565316 CABP1Q9NZU7 370 aa24.61■■□□□ 1.53
CLN3-216ENST00000565316 TRPM1Q7Z4N2 1603 aa24.61■■□□□ 1.53
CLN3-216ENST00000565316 SSH2Q76I76 1423 aa24.6■■□□□ 1.53
CLN3-216ENST00000565316 CAMTA1Q9Y6Y1 1673 aa24.6■■□□□ 1.53
CLN3-216ENST00000565316 GCP02774 474 aa24.6■■□□□ 1.53
CLN3-216ENST00000565316 BAG6P46379 1132 aa24.6■■□□□ 1.53
CLN3-216ENST00000565316 FAM182BQ5T319 152 aa24.59■■□□□ 1.53
CLN3-216ENST00000565316 EVC2Q86UK5 1308 aa24.58■■□□□ 1.53
CLN3-216ENST00000565316 LMO7Q8WWI1 1683 aa24.58■■□□□ 1.53
CLN3-216ENST00000565316 USP6P35125 1406 aa24.58■■□□□ 1.53
CLN3-216ENST00000565316 NEUROD1Q13562 356 aa24.58■■□□□ 1.52
CLN3-216ENST00000565316 BARGINQ6ZT62 677 aa24.58■■□□□ 1.52
CLN3-216ENST00000565316 EVA1CP58658 441 aa24.57■■□□□ 1.52
CLN3-216ENST00000565316 ROCK2O75116 1388 aaKnown RBP24.56■■□□□ 1.52
CLN3-216ENST00000565316 LARP1Q6PKG0 1096 aaKnown RBP24.55■■□□□ 1.52
CLN3-216ENST00000565316 DISP2A7MBM2 1401 aa24.55■■□□□ 1.52
CLN3-216ENST00000565316 RGPD1P0DJD0 1748 aa24.54■■□□□ 1.52
CLN3-216ENST00000565316 FAM196AQ6ZSG2 479 aa24.53■■□□□ 1.52
CLN3-216ENST00000565316 NLRP6P59044 892 aa24.52■■□□□ 1.52
CLN3-216ENST00000565316 EN1Q05925 392 aaPredicted RBP24.52■■□□□ 1.52
CLN3-216ENST00000565316 TCP11L2Q8N4U5 519 aa24.52■■□□□ 1.52
CLN3-216ENST00000565316 USP35Q9P2H5 1018 aa24.52■■□□□ 1.52
CLN3-216ENST00000565316 SLIT3O75094 1523 aa24.51■■□□□ 1.51
CLN3-216ENST00000565316 THRAP3Q9Y2W1 955 aaKnown RBP24.51■■□□□ 1.51
CLN3-216ENST00000565316 COL5A2P05997 1499 aaPredicted RBP24.5■■□□□ 1.51
CLN3-216ENST00000565316 AATKQ6ZMQ8 1374 aa24.49■■□□□ 1.51
CLN3-216ENST00000565316 ZNF692Q9BU19 519 aaPredicted RBP24.49■■□□□ 1.51
CLN3-216ENST00000565316 TNS1Q9HBL0 1735 aaKnown RBP24.49■■□□□ 1.51
CLN3-216ENST00000565316 PIK3C2AO00443 1686 aa24.47■■□□□ 1.51
CLN3-216ENST00000565316 PDE3BQ13370 1112 aa24.47■■□□□ 1.51
CLN3-216ENST00000565316 TTC21BQ7Z4L5 1316 aa24.46■■□□□ 1.51
CLN3-216ENST00000565316 TRIM37O94972 964 aa24.46■■□□□ 1.51
CLN3-216ENST00000565316 SBNO2Q9Y2G9 1366 aa24.46■■□□□ 1.51
CLN3-216ENST00000565316 CRB1P82279 1406 aa24.45■■□□□ 1.5
CLN3-216ENST00000565316 CPSF1Q10570 1443 aaKnown RBP24.45■■□□□ 1.5
CLN3-216ENST00000565316 CAMKK2Q96RR4 588 aa24.45■■□□□ 1.5
CLN3-216ENST00000565316 PSDA5PKW4 1024 aaPredicted RBP24.43■■□□□ 1.5
CLN3-216ENST00000565316 TTC21AQ8NDW8 1320 aa24.43■■□□□ 1.5
CLN3-216ENST00000565316 LRP5O75197 1615 aa24.42■■□□□ 1.5
CLN3-216ENST00000565316 EZH2Q15910 746 aaKnown RBP24.42■■□□□ 1.5
CLN3-216ENST00000565316 COL18A1P39060 1754 aa24.41■■□□□ 1.5
CLN3-216ENST00000565316 AKAP12Q02952 1782 aa24.41■■□□□ 1.5
CLN3-216ENST00000565316 PARD3Q8TEW0 1356 aa24.41■■□□□ 1.5
CLN3-216ENST00000565316 ZBTB7CA1YPR0 619 aa24.4■■□□□ 1.5
CLN3-216ENST00000565316 ARHGEF25Q86VW2 580 aa24.4■■□□□ 1.5
CLN3-216ENST00000565316 PARP4Q9UKK3 1724 aaKnown RBP24.4■■□□□ 1.5
CLN3-216ENST00000565316 APBA3O96018 575 aa24.39■■□□□ 1.5
CLN3-216ENST00000565316 KCNH5Q8NCM2 988 aa24.39■■□□□ 1.5
CLN3-216ENST00000565316 CARD11Q9BXL7 1154 aa24.39■■□□□ 1.5
CLN3-216ENST00000565316 AXIN2Q9Y2T1 843 aa24.39■■□□□ 1.5
CLN3-216ENST00000565316 KTN1Q86UP2 1357 aaKnown RBP24.39■■□□□ 1.49
CLN3-216ENST00000565316 C11orf95C9JLR9 678 aaPredicted RBP24.37■■□□□ 1.49
CLN3-216ENST00000565316 WDR17Q8IZU2 1322 aa24.36■■□□□ 1.49
CLN3-216ENST00000565316 R3HDM1Q15032 1099 aaKnown RBP24.35■■□□□ 1.49
CLN3-216ENST00000565316 TOM1L2Q6ZVM7 507 aa24.35■■□□□ 1.49
CLN3-216ENST00000565316 NFAT5O94916 1531 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms