RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 ITSN1Q15811 1721 aa24.06■■□□□ 1.44
COMMD4-208ENST00000563220 FMN2Q9NZ56 1722 aa24.06■■□□□ 1.44
COMMD4-208ENST00000563220 C14orf37Q86TY3 774 aa24.06■■□□□ 1.44
COMMD4-208ENST00000563220 CFAP53Q96M91 514 aa24.06■■□□□ 1.44
COMMD4-208ENST00000563220 SALL2Q9Y467 1007 aaPredicted RBP24.05■■□□□ 1.44
COMMD4-208ENST00000563220 SSH2Q76I76 1423 aa24.05■■□□□ 1.44
COMMD4-208ENST00000563220 RGPD8O14715 1765 aaPredicted RBP24.05■■□□□ 1.44
COMMD4-208ENST00000563220 COG3Q96JB2 828 aa24.04■■□□□ 1.44
COMMD4-208ENST00000563220 POLKQ9UBT6 870 aa24.02■■□□□ 1.44
COMMD4-208ENST00000563220 NRKQ7Z2Y5 1582 aa24.01■■□□□ 1.43
COMMD4-208ENST00000563220 CCDC146Q8IYE0 955 aa24.01■■□□□ 1.43
COMMD4-208ENST00000563220 PHF8Q9UPP1 1060 aa24■■□□□ 1.43
COMMD4-208ENST00000563220 SHPRHQ149N8 1683 aa23.99■■□□□ 1.43
COMMD4-208ENST00000563220 PNPLA6Q8IY17 1366 aa23.99■■□□□ 1.43
COMMD4-208ENST00000563220 STRCQ7RTU9 1775 aa23.98■■□□□ 1.43
COMMD4-208ENST00000563220 C19orf44Q9H6X5 657 aa23.98■■□□□ 1.43
COMMD4-208ENST00000563220 TTC21AQ8NDW8 1320 aa23.98■■□□□ 1.43
COMMD4-208ENST00000563220 AATKQ6ZMQ8 1374 aa23.97■■□□□ 1.43
COMMD4-208ENST00000563220 COL3A1P02461 1466 aaPredicted RBP23.97■■□□□ 1.43
COMMD4-208ENST00000563220 ESCO1Q5FWF5 840 aa23.97■■□□□ 1.43
COMMD4-208ENST00000563220 TMEM94Q12767 1356 aa23.97■■□□□ 1.43
COMMD4-208ENST00000563220 EMILIN1Q9Y6C2 1016 aa23.96■■□□□ 1.43
COMMD4-208ENST00000563220 STRCP1A6NGW2 1772 aa23.96■■□□□ 1.43
COMMD4-208ENST00000563220 OVOS2A0A0J9YW53 1432 aa23.95■■□□□ 1.43
COMMD4-208ENST00000563220 OVOS2Q6IE36 1432 aa23.95■■□□□ 1.43
COMMD4-208ENST00000563220 PPM1GO15355 546 aaPredicted RBP23.95■■□□□ 1.42
COMMD4-208ENST00000563220 APAF1O14727 1248 aa23.94■■□□□ 1.42
COMMD4-208ENST00000563220 SMG6Q86US8 1419 aaKnown RBP23.94■■□□□ 1.42
COMMD4-208ENST00000563220 RRS1Q15050 365 aaKnown RBP23.94■■□□□ 1.42
COMMD4-208ENST00000563220 ORAI2Q96SN7 254 aa23.94■■□□□ 1.42
COMMD4-208ENST00000563220 NUDCQ9Y266 331 aa23.94■■□□□ 1.42
COMMD4-208ENST00000563220 U2AF1L5P0DN76 240 aaPredicted RBP23.92■■□□□ 1.42
COMMD4-208ENST00000563220 U2AF1Q01081 240 aaKnown RBP eCLIP23.92■■□□□ 1.42
COMMD4-208ENST00000563220 DIAPH1O60610 1272 aaKnown RBP23.92■■□□□ 1.42
COMMD4-208ENST00000563220 NCOA3Q9Y6Q9 1424 aa23.91■■□□□ 1.42
COMMD4-208ENST00000563220 PDE3BQ13370 1112 aa23.91■■□□□ 1.42
COMMD4-208ENST00000563220 SUPT16HQ9Y5B9 1047 aaKnown RBP23.91■■□□□ 1.42
COMMD4-208ENST00000563220 USP31Q70CQ4 1352 aa23.9■■□□□ 1.42
COMMD4-208ENST00000563220 U2SURPO15042 1029 aaKnown RBP23.9■■□□□ 1.42
COMMD4-208ENST00000563220 RUNDC1Q96C34 613 aa23.9■■□□□ 1.42
COMMD4-208ENST00000563220 CDCA7LQ96GN5 454 aa23.9■■□□□ 1.42
COMMD4-208ENST00000563220 ZNF521Q96K83 1311 aa23.88■■□□□ 1.41
COMMD4-208ENST00000563220 MAP2P11137 1827 aaKnown RBP23.88■■□□□ 1.41
COMMD4-208ENST00000563220 C1orf167Q5SNV9 1468 aa23.88■■□□□ 1.41
COMMD4-208ENST00000563220 PAK3O75914 559 aaPredicted RBP23.87■■□□□ 1.41
COMMD4-208ENST00000563220 ATF3P18847 181 aa23.87■■□□□ 1.41
COMMD4-208ENST00000563220 NLRP6P59044 892 aa23.87■■□□□ 1.41
COMMD4-208ENST00000563220 PSME1Q06323 249 aa23.87■■□□□ 1.41
COMMD4-208ENST00000563220 ZNF335Q9H4Z2 1342 aaPredicted RBP23.86■■□□□ 1.41
COMMD4-208ENST00000563220 FOXO3O43524 673 aa23.85■■□□□ 1.41
COMMD4-208ENST00000563220 NUTM2GQ5VZR2 741 aa23.85■■□□□ 1.41
COMMD4-208ENST00000563220 ABTB2Q8N961 1025 aa23.85■■□□□ 1.41
COMMD4-208ENST00000563220 SOX12O15370 315 aa23.85■■□□□ 1.41
COMMD4-208ENST00000563220 CDK12Q9NYV4 1490 aaPredicted RBP23.85■■□□□ 1.41
COMMD4-208ENST00000563220 PIK3C2AO00443 1686 aa23.84■■□□□ 1.41
COMMD4-208ENST00000563220 IL13P35225 146 aa23.84■■□□□ 1.41
COMMD4-208ENST00000563220 TCP11L2Q8N4U5 519 aa23.84■■□□□ 1.41
COMMD4-208ENST00000563220 PLEKHF1Q96S99 279 aa23.83■■□□□ 1.41
COMMD4-208ENST00000563220 DCCP43146 1447 aa23.83■■□□□ 1.41
COMMD4-208ENST00000563220 MST1RQ04912 1400 aa23.83■■□□□ 1.4
COMMD4-208ENST00000563220 NGEFQ8N5V2 710 aa23.82■■□□□ 1.4
COMMD4-208ENST00000563220 CADPS2Q86UW7 1296 aa23.81■■□□□ 1.4
COMMD4-208ENST00000563220 XPCQ01831 940 aaPredicted RBP23.81■■□□□ 1.4
COMMD4-208ENST00000563220 RRP7AQ9Y3A4 280 aaKnown RBP23.81■■□□□ 1.4
COMMD4-208ENST00000563220 LRRC7Q96NW7 1537 aa23.8■■□□□ 1.4
COMMD4-208ENST00000563220 MAP3K19Q56UN5 1328 aa23.8■■□□□ 1.4
COMMD4-208ENST00000563220 IQSEC2Q5JU85 1478 aa23.79■■□□□ 1.4
COMMD4-208ENST00000563220 FKBP8Q14318 412 aa23.79■■□□□ 1.4
COMMD4-208ENST00000563220 MSH6P52701 1360 aa23.79■■□□□ 1.4
COMMD4-208ENST00000563220 GOLGA2Q08379 1002 aa23.79■■□□□ 1.4
COMMD4-208ENST00000563220 NEUROD2Q15784 382 aa23.79■■□□□ 1.4
COMMD4-208ENST00000563220 FCHSD2O94868 740 aa23.77■■□□□ 1.4
COMMD4-208ENST00000563220 WWC1Q8IX03 1113 aa23.77■■□□□ 1.4
COMMD4-208ENST00000563220 HSP90AB2PQ58FF8 381 aa23.77■■□□□ 1.4
COMMD4-208ENST00000563220 KRT28Q7Z3Y7 464 aa23.77■■□□□ 1.4
COMMD4-208ENST00000563220 DMRT2Q9Y5R5 561 aa23.77■■□□□ 1.4
COMMD4-208ENST00000563220 NEFLP07196 543 aa23.76■■□□□ 1.39
COMMD4-208ENST00000563220 EIF4A2Q14240 407 aaKnown RBP23.76■■□□□ 1.39
COMMD4-208ENST00000563220 PHF23Q9BUL5 403 aaPredicted RBP23.76■■□□□ 1.39
COMMD4-208ENST00000563220 RSPH6AQ9H0K4 717 aa23.76■■□□□ 1.39
COMMD4-208ENST00000563220 SPINK5Q9NQ38 1064 aaPredicted RBP23.76■■□□□ 1.39
COMMD4-208ENST00000563220 SLFN5Q08AF3 891 aa23.75■■□□□ 1.39
COMMD4-208ENST00000563220 HMOX1P09601 288 aa23.75■■□□□ 1.39
COMMD4-208ENST00000563220 XIRP1Q702N8 1843 aaKnown RBP23.74■■□□□ 1.39
COMMD4-208ENST00000563220 DUSP27Q5VZP5 1158 aa23.74■■□□□ 1.39
COMMD4-208ENST00000563220 PNNQ9H307 717 aaKnown RBP23.74■■□□□ 1.39
COMMD4-208ENST00000563220 PEAK1Q9H792 1746 aa23.74■■□□□ 1.39
COMMD4-208ENST00000563220 MARF1Q9Y4F3 1742 aaKnown RBP23.74■■□□□ 1.39
COMMD4-208ENST00000563220 NCBP3Q53F19 620 aaKnown RBP23.73■■□□□ 1.39
COMMD4-208ENST00000563220 SBNO1A3KN83 1393 aa23.73■■□□□ 1.39
COMMD4-208ENST00000563220 USP54Q70EL1 1684 aa23.73■■□□□ 1.39
COMMD4-208ENST00000563220 PRKAR2BP31323 418 aa23.73■■□□□ 1.39
COMMD4-208ENST00000563220 CCDC27Q2M243 656 aa23.73■■□□□ 1.39
COMMD4-208ENST00000563220 TRMT2AQ8IZ69 625 aaKnown RBP23.73■■□□□ 1.39
COMMD4-208ENST00000563220 DDX17Q92841 729 aaKnown RBP23.73■■□□□ 1.39
COMMD4-208ENST00000563220 TMPOP42166 694 aaKnown RBP23.72■■□□□ 1.39
COMMD4-208ENST00000563220 MAPK8IP3Q9UPT6 1336 aa23.71■■□□□ 1.39
COMMD4-208ENST00000563220 KIF1AQ12756 1690 aa23.71■■□□□ 1.39
COMMD4-208ENST00000563220 AMPHP49418 695 aa23.71■■□□□ 1.39
COMMD4-208ENST00000563220 IRX6P78412 446 aaPredicted RBP23.7■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms