RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TONSLQ96HA7 1378 aa24.05■■□□□ 1.44
CLK3-210ENST00000563112 NBPF8Q3BBV2 869 aa24.05■■□□□ 1.44
CLK3-210ENST00000563112 CABP2Q9NPB3 220 aa24.05■■□□□ 1.44
CLK3-210ENST00000563112 POLR3AO14802 1390 aaPredicted RBP24.04■■□□□ 1.44
CLK3-210ENST00000563112 TOPAZ1Q8N9V7 1692 aa24.04■■□□□ 1.44
CLK3-210ENST00000563112 FAM83GA6ND36 823 aa24.02■■□□□ 1.44
CLK3-210ENST00000563112 EVC2Q86UK5 1308 aa24.02■■□□□ 1.44
CLK3-210ENST00000563112 PPIP5K1Q6PFW1 1433 aa24.01■■□□□ 1.43
CLK3-210ENST00000563112 CCDC9Q9Y3X0 531 aaKnown RBP24.01■■□□□ 1.43
CLK3-210ENST00000563112 ATAD2Q6PL18 1390 aa24.01■■□□□ 1.43
CLK3-210ENST00000563112 PLCH1Q4KWH8 1693 aa24■■□□□ 1.43
CLK3-210ENST00000563112 VPS72Q15906 364 aa24■■□□□ 1.43
CLK3-210ENST00000563112 NWD2Q9ULI1 1742 aa24■■□□□ 1.43
CLK3-210ENST00000563112 RALGAPBQ86X10 1494 aa23.99■■□□□ 1.43
CLK3-210ENST00000563112 ABTB2Q8N961 1025 aa23.97■■□□□ 1.43
CLK3-210ENST00000563112 CARD11Q9BXL7 1154 aa23.97■■□□□ 1.43
CLK3-210ENST00000563112 BTG4Q9NY30 223 aa23.97■■□□□ 1.43
CLK3-210ENST00000563112 NUTM2GQ5VZR2 741 aa23.96■■□□□ 1.43
CLK3-210ENST00000563112 PRDM11Q9NQV5 511 aa23.96■■□□□ 1.43
CLK3-210ENST00000563112 CABP1Q9NZU7 370 aa23.96■■□□□ 1.43
CLK3-210ENST00000563112 COL14A1Q05707 1796 aaKnown RBP23.96■■□□□ 1.43
CLK3-210ENST00000563112 GLI3P10071 1580 aa23.95■■□□□ 1.43
CLK3-210ENST00000563112 BRD4O60885 1362 aaPredicted RBP23.94■■□□□ 1.42
CLK3-210ENST00000563112 CRYBG1Q9Y4K1 1723 aa23.93■■□□□ 1.42
CLK3-210ENST00000563112 NLRP13Q86W25 1043 aa23.92■■□□□ 1.42
CLK3-210ENST00000563112 ZC3H6P61129 1189 aaKnown RBP23.9■■□□□ 1.42
CLK3-210ENST00000563112 SEPT12Q8IYM1 358 aa23.9■■□□□ 1.42
CLK3-210ENST00000563112 KIAA0232Q92628 1395 aa23.9■■□□□ 1.42
CLK3-210ENST00000563112 PHRF1Q9P1Y6 1649 aaKnown RBP23.88■■□□□ 1.41
CLK3-210ENST00000563112 ONECUT3O60422 494 aaPredicted RBP23.88■■□□□ 1.41
CLK3-210ENST00000563112 ZNF692Q9BU19 519 aaPredicted RBP23.88■■□□□ 1.41
CLK3-210ENST00000563112 NRAPQ86VF7 1730 aa23.87■■□□□ 1.41
CLK3-210ENST00000563112 USP6P35125 1406 aa23.87■■□□□ 1.41
CLK3-210ENST00000563112 A0A0G2JS52 829 aa23.87■■□□□ 1.41
CLK3-210ENST00000563112 MYT1Q01538 1121 aa23.87■■□□□ 1.41
CLK3-210ENST00000563112 CHRNA2Q15822 529 aa23.87■■□□□ 1.41
CLK3-210ENST00000563112 SBNO2Q9Y2G9 1366 aa23.87■■□□□ 1.41
CLK3-210ENST00000563112 CCDC125Q86Z20 511 aa23.86■■□□□ 1.41
CLK3-210ENST00000563112 USP19O94966 1318 aa23.85■■□□□ 1.41
CLK3-210ENST00000563112 NLRP6P59044 892 aa23.84■■□□□ 1.41
CLK3-210ENST00000563112 FAM98CQ17RN3 349 aaKnown RBP23.84■■□□□ 1.41
CLK3-210ENST00000563112 SPATA31A5Q5VU36 1347 aa23.84■■□□□ 1.41
CLK3-210ENST00000563112 SPATA31A7Q8IWB4 1347 aa23.84■■□□□ 1.41
CLK3-210ENST00000563112 GCP02774 474 aa23.83■■□□□ 1.41
CLK3-210ENST00000563112 EVA1CP58658 441 aa23.82■■□□□ 1.4
CLK3-210ENST00000563112 KRT27Q7Z3Y8 459 aa23.82■■□□□ 1.4
CLK3-210ENST00000563112 STRN4Q9NRL3 753 aa23.82■■□□□ 1.4
CLK3-210ENST00000563112 BRWD3Q6RI45 1802 aa23.82■■□□□ 1.4
CLK3-210ENST00000563112 NRKQ7Z2Y5 1582 aa23.81■■□□□ 1.4
CLK3-210ENST00000563112 CPDO75976 1380 aa23.8■■□□□ 1.4
CLK3-210ENST00000563112 SSH2Q76I76 1423 aa23.79■■□□□ 1.4
CLK3-210ENST00000563112 TTC21BQ7Z4L5 1316 aa23.79■■□□□ 1.4
CLK3-210ENST00000563112 PCGF6Q9BYE7 350 aa23.78■■□□□ 1.4
CLK3-210ENST00000563112 KTN1Q86UP2 1357 aaKnown RBP23.78■■□□□ 1.4
CLK3-210ENST00000563112 SLC24A1O60721 1099 aa23.77■■□□□ 1.4
CLK3-210ENST00000563112 TMC1Q8TDI8 760 aa23.77■■□□□ 1.4
CLK3-210ENST00000563112 SPATA31A1Q5TZJ5 1347 aa23.77■■□□□ 1.4
CLK3-210ENST00000563112 TTC21AQ8NDW8 1320 aa23.77■■□□□ 1.4
CLK3-210ENST00000563112 AKAP12Q02952 1782 aa23.76■■□□□ 1.39
CLK3-210ENST00000563112 ZBTB7CA1YPR0 619 aa23.76■■□□□ 1.39
CLK3-210ENST00000563112 EP400Q96L91 3159 aa23.76■■□□□ 1.39
CLK3-210ENST00000563112 CPSF1Q10570 1443 aaKnown RBP23.76■■□□□ 1.39
CLK3-210ENST00000563112 SF3B2Q13435 895 aaKnown RBP23.75■■□□□ 1.39
CLK3-210ENST00000563112 PUS7Q96PZ0 661 aaKnown RBP23.75■■□□□ 1.39
CLK3-210ENST00000563112 BLMP54132 1417 aaPredicted RBP23.75■■□□□ 1.39
CLK3-210ENST00000563112 HDGFL2Q7Z4V5 671 aaPredicted RBP23.74■■□□□ 1.39
CLK3-210ENST00000563112 ST20-MTHFSA0A0A6YYL1 179 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 KCNH5Q8NCM2 988 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 USP35Q9P2H5 1018 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 TIMELESSQ9UNS1 1208 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 CLSPNQ9HAW4 1339 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 PIK3C2AO00443 1686 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 CAMTA1Q9Y6Y1 1673 aa23.73■■□□□ 1.39
CLK3-210ENST00000563112 SLIT3O75094 1523 aa23.72■■□□□ 1.39
CLK3-210ENST00000563112 LMO7Q8WWI1 1683 aa23.7■■□□□ 1.39
CLK3-210ENST00000563112 LARP1Q6PKG0 1096 aaKnown RBP23.7■■□□□ 1.38
CLK3-210ENST00000563112 SLC12A5Q9H2X9 1139 aa23.7■■□□□ 1.38
CLK3-210ENST00000563112 TERF2IPQ9NYB0 399 aa23.7■■□□□ 1.38
CLK3-210ENST00000563112 AATKQ6ZMQ8 1374 aa23.69■■□□□ 1.38
CLK3-210ENST00000563112 BARGINQ6ZT62 677 aa23.69■■□□□ 1.38
CLK3-210ENST00000563112 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.69■■□□□ 1.38
CLK3-210ENST00000563112 TESK2Q96S53 571 aa23.69■■□□□ 1.38
CLK3-210ENST00000563112 THSD7AQ9UPZ6 1657 aa23.68■■□□□ 1.38
CLK3-210ENST00000563112 TCP11L2Q8N4U5 519 aa23.68■■□□□ 1.38
CLK3-210ENST00000563112 MON2Q7Z3U7 1717 aa23.67■■□□□ 1.38
CLK3-210ENST00000563112 THRAP3Q9Y2W1 955 aaKnown RBP23.67■■□□□ 1.38
CLK3-210ENST00000563112 SOX12O15370 315 aa23.66■■□□□ 1.38
CLK3-210ENST00000563112 ZRANB1Q9UGI0 708 aa23.66■■□□□ 1.38
CLK3-210ENST00000563112 COL5A2P05997 1499 aaPredicted RBP23.66■■□□□ 1.38
CLK3-210ENST00000563112 CD163L1Q9NR16 1453 aa23.64■■□□□ 1.38
CLK3-210ENST00000563112 PDE3BQ13370 1112 aa23.64■■□□□ 1.37
CLK3-210ENST00000563112 ARHGEF25Q86VW2 580 aa23.64■■□□□ 1.37
CLK3-210ENST00000563112 USP47Q96K76 1375 aa23.64■■□□□ 1.37
CLK3-210ENST00000563112 NINLQ9Y2I6 1382 aa23.64■■□□□ 1.37
CLK3-210ENST00000563112 CRB1P82279 1406 aa23.63■■□□□ 1.37
CLK3-210ENST00000563112 FAM182BQ5T319 152 aa23.63■■□□□ 1.37
CLK3-210ENST00000563112 DEFB132Q7Z7B7 95 aa23.63■■□□□ 1.37
CLK3-210ENST00000563112 USP31Q70CQ4 1352 aa23.63■■□□□ 1.37
CLK3-210ENST00000563112 EDC4Q6P2E9 1401 aaKnown RBP23.62■■□□□ 1.37
CLK3-210ENST00000563112 BAG6P46379 1132 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms