RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 COL14A1Q05707 1796 aaKnown RBP23.02■■□□□ 1.28
LMX1B-204ENST00000561065 BRWD3Q6RI45 1802 aa23.02■■□□□ 1.28
LMX1B-204ENST00000561065 TRIM26Q12899 539 aaPredicted RBP23.02■■□□□ 1.28
LMX1B-204ENST00000561065 UNC5CLQ8IV45 518 aa23.02■■□□□ 1.28
LMX1B-204ENST00000561065 HAP1P54257 671 aaPredicted RBP23.01■■□□□ 1.27
LMX1B-204ENST00000561065 GJD4Q96KN9 370 aaPredicted RBP23.01■■□□□ 1.27
LMX1B-204ENST00000561065 NRKQ7Z2Y5 1582 aa22.98■■□□□ 1.27
LMX1B-204ENST00000561065 ACEP12821 1306 aa22.97■■□□□ 1.27
LMX1B-204ENST00000561065 PPIP5K1Q6PFW1 1433 aa22.97■■□□□ 1.27
LMX1B-204ENST00000561065 NBPF8Q3BBV2 869 aa22.97■■□□□ 1.27
LMX1B-204ENST00000561065 CCDC61Q9Y6R9 512 aa22.97■■□□□ 1.27
LMX1B-204ENST00000561065 ROCK2O75116 1388 aaKnown RBP22.97■■□□□ 1.27
LMX1B-204ENST00000561065 FAM83GA6ND36 823 aa22.96■■□□□ 1.27
LMX1B-204ENST00000561065 PAK3O75914 559 aaPredicted RBP22.96■■□□□ 1.27
LMX1B-204ENST00000561065 ATAD2Q6PL18 1390 aa22.96■■□□□ 1.27
LMX1B-204ENST00000561065 PLEKHG3A1L390 1219 aa22.95■■□□□ 1.26
LMX1B-204ENST00000561065 CABP2Q9NPB3 220 aa22.95■■□□□ 1.26
LMX1B-204ENST00000561065 SRPK2P78362 688 aaKnown RBP22.93■■□□□ 1.26
LMX1B-204ENST00000561065 VPS72Q15906 364 aa22.93■■□□□ 1.26
LMX1B-204ENST00000561065 AKAP12Q02952 1782 aa22.9■■□□□ 1.26
LMX1B-204ENST00000561065 NUTM2GQ5VZR2 741 aa22.89■■□□□ 1.26
LMX1B-204ENST00000561065 PIK3C2AO00443 1686 aa22.89■■□□□ 1.25
LMX1B-204ENST00000561065 BTG4Q9NY30 223 aa22.88■■□□□ 1.25
LMX1B-204ENST00000561065 LMO7Q8WWI1 1683 aa22.88■■□□□ 1.25
LMX1B-204ENST00000561065 KIAA0232Q92628 1395 aa22.88■■□□□ 1.25
LMX1B-204ENST00000561065 USP6P35125 1406 aa22.88■■□□□ 1.25
LMX1B-204ENST00000561065 THSD7AQ9UPZ6 1657 aa22.87■■□□□ 1.25
LMX1B-204ENST00000561065 USP19O94966 1318 aa22.86■■□□□ 1.25
LMX1B-204ENST00000561065 TONSLQ96HA7 1378 aa22.86■■□□□ 1.25
LMX1B-204ENST00000561065 SSH2Q76I76 1423 aa22.85■■□□□ 1.25
LMX1B-204ENST00000561065 PRDM11Q9NQV5 511 aa22.84■■□□□ 1.25
LMX1B-204ENST00000561065 SEPT12Q8IYM1 358 aa22.83■■□□□ 1.25
LMX1B-204ENST00000561065 CABP1Q9NZU7 370 aa22.83■■□□□ 1.25
LMX1B-204ENST00000561065 CCDC9Q9Y3X0 531 aaKnown RBP22.83■■□□□ 1.25
LMX1B-204ENST00000561065 EVC2Q86UK5 1308 aa22.83■■□□□ 1.25
LMX1B-204ENST00000561065 MON2Q7Z3U7 1717 aa22.83■■□□□ 1.25
LMX1B-204ENST00000561065 ONECUT3O60422 494 aaPredicted RBP22.82■■□□□ 1.24
LMX1B-204ENST00000561065 CHRNA2Q15822 529 aa22.82■■□□□ 1.24
LMX1B-204ENST00000561065 SBNO2Q9Y2G9 1366 aa22.82■■□□□ 1.24
LMX1B-204ENST00000561065 SLIT3O75094 1523 aa22.82■■□□□ 1.24
LMX1B-204ENST00000561065 CAMTA1Q9Y6Y1 1673 aa22.81■■□□□ 1.24
LMX1B-204ENST00000561065 ZC3H6P61129 1189 aaKnown RBP22.81■■□□□ 1.24
LMX1B-204ENST00000561065 ABTB2Q8N961 1025 aa22.81■■□□□ 1.24
LMX1B-204ENST00000561065 BRD4O60885 1362 aaPredicted RBP22.8■■□□□ 1.24
LMX1B-204ENST00000561065 SPATA31A5Q5VU36 1347 aa22.8■■□□□ 1.24
LMX1B-204ENST00000561065 SPATA31A7Q8IWB4 1347 aa22.8■■□□□ 1.24
LMX1B-204ENST00000561065 CPDO75976 1380 aa22.79■■□□□ 1.24
LMX1B-204ENST00000561065 FAM98CQ17RN3 349 aaKnown RBP22.79■■□□□ 1.24
LMX1B-204ENST00000561065 CARD11Q9BXL7 1154 aa22.78■■□□□ 1.24
LMX1B-204ENST00000561065 CPSF1Q10570 1443 aaKnown RBP22.76■■□□□ 1.23
LMX1B-204ENST00000561065 BLMP54132 1417 aaPredicted RBP22.76■■□□□ 1.23
LMX1B-204ENST00000561065 COL18A1P39060 1754 aa22.75■■□□□ 1.23
LMX1B-204ENST00000561065 CD163L1Q9NR16 1453 aa22.75■■□□□ 1.23
LMX1B-204ENST00000561065 KRT27Q7Z3Y8 459 aa22.74■■□□□ 1.23
LMX1B-204ENST00000561065 SPATA31A1Q5TZJ5 1347 aa22.73■■□□□ 1.23
LMX1B-204ENST00000561065 NLRP13Q86W25 1043 aa22.73■■□□□ 1.23
LMX1B-204ENST00000561065 STRN4Q9NRL3 753 aa22.73■■□□□ 1.23
LMX1B-204ENST00000561065 USP54Q70EL1 1684 aa22.73■■□□□ 1.23
LMX1B-204ENST00000561065 COL5A2P05997 1499 aaPredicted RBP22.72■■□□□ 1.23
LMX1B-204ENST00000561065 A0A0G2JS52 829 aa22.72■■□□□ 1.23
LMX1B-204ENST00000561065 GCP02774 474 aa22.72■■□□□ 1.23
LMX1B-204ENST00000561065 MYT1Q01538 1121 aa22.72■■□□□ 1.23
LMX1B-204ENST00000561065 TNS1Q9HBL0 1735 aaKnown RBP22.71■■□□□ 1.23
LMX1B-204ENST00000561065 TTC21BQ7Z4L5 1316 aa22.7■■□□□ 1.23
LMX1B-204ENST00000561065 NFAT5O94916 1531 aa22.7■■□□□ 1.22
LMX1B-204ENST00000561065 RGPD5Q99666 1765 aa22.7■■□□□ 1.22
LMX1B-204ENST00000561065 RGPD1P0DJD0 1748 aa22.7■■□□□ 1.22
LMX1B-204ENST00000561065 NLRP6P59044 892 aa22.69■■□□□ 1.22
LMX1B-204ENST00000561065 CCDC125Q86Z20 511 aa22.69■■□□□ 1.22
LMX1B-204ENST00000561065 WNK3Q9BYP7 1800 aa22.69■■□□□ 1.22
LMX1B-204ENST00000561065 KTN1Q86UP2 1357 aaKnown RBP22.67■■□□□ 1.22
LMX1B-204ENST00000561065 PARP4Q9UKK3 1724 aaKnown RBP22.67■■□□□ 1.22
LMX1B-204ENST00000561065 FAM182BQ5T319 152 aa22.66■■□□□ 1.22
LMX1B-204ENST00000561065 LARP1Q6PKG0 1096 aaKnown RBP22.66■■□□□ 1.22
LMX1B-204ENST00000561065 SRCAPQ6ZRS2 3230 aa22.65■■□□□ 1.22
LMX1B-204ENST00000561065 DEFB132Q7Z7B7 95 aa22.65■■□□□ 1.22
LMX1B-204ENST00000561065 TTC21AQ8NDW8 1320 aa22.65■■□□□ 1.22
LMX1B-204ENST00000561065 AATKQ6ZMQ8 1374 aa22.65■■□□□ 1.22
LMX1B-204ENST00000561065 TESK2Q96S53 571 aa22.64■■□□□ 1.22
LMX1B-204ENST00000561065 ZNF692Q9BU19 519 aaPredicted RBP22.64■■□□□ 1.22
LMX1B-204ENST00000561065 LRRC37A3O60309 1634 aa22.64■■□□□ 1.21
LMX1B-204ENST00000561065 USP35Q9P2H5 1018 aa22.63■■□□□ 1.21
LMX1B-204ENST00000561065 LTN1O94822 1766 aa22.62■■□□□ 1.21
LMX1B-204ENST00000561065 ZBTB7CA1YPR0 619 aa22.61■■□□□ 1.21
LMX1B-204ENST00000561065 EVA1CP58658 441 aa22.61■■□□□ 1.21
LMX1B-204ENST00000561065 A0A1W2PP64 1363 aa22.61■■□□□ 1.21
LMX1B-204ENST00000561065 CRB1P82279 1406 aa22.61■■□□□ 1.21
LMX1B-204ENST00000561065 ST20-MTHFSA0A0A6YYL1 179 aa22.6■■□□□ 1.21
LMX1B-204ENST00000561065 BARGINQ6ZT62 677 aa22.6■■□□□ 1.21
LMX1B-204ENST00000561065 ZRANB1Q9UGI0 708 aa22.6■■□□□ 1.21
LMX1B-204ENST00000561065 SLC12A5Q9H2X9 1139 aa22.59■■□□□ 1.21
LMX1B-204ENST00000561065 ABCC6O95255 1503 aa22.59■■□□□ 1.21
LMX1B-204ENST00000561065 AXIN2Q9Y2T1 843 aa22.58■■□□□ 1.21
LMX1B-204ENST00000561065 USP31Q70CQ4 1352 aa22.58■■□□□ 1.21
LMX1B-204ENST00000561065 EDC4Q6P2E9 1401 aaKnown RBP22.58■■□□□ 1.21
LMX1B-204ENST00000561065 PEAK1Q9H792 1746 aa22.58■■□□□ 1.21
LMX1B-204ENST00000561065 SOX12O15370 315 aa22.57■■□□□ 1.2
LMX1B-204ENST00000561065 ARHGEF25Q86VW2 580 aa22.57■■□□□ 1.2
LMX1B-204ENST00000561065 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.57■■□□□ 1.2
LMX1B-204ENST00000561065 TCP11L2Q8N4U5 519 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms