RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 GPRASP1Q5JY77 1395 aa16.87■□□□□ 0.29
LDLR-212ENST00000560467 TRPM3Q9HCF6 1732 aaPredicted RBP16.85■□□□□ 0.29
LDLR-212ENST00000560467 PSDA5PKW4 1024 aaPredicted RBP16.85■□□□□ 0.29
LDLR-212ENST00000560467 KDM2AQ9Y2K7 1162 aa16.85■□□□□ 0.29
LDLR-212ENST00000560467 TULP4Q9NRJ4 1543 aa16.85■□□□□ 0.29
LDLR-212ENST00000560467 NRAPQ86VF7 1730 aa16.84■□□□□ 0.29
LDLR-212ENST00000560467 WASLO00401 505 aaPredicted RBP16.84■□□□□ 0.29
LDLR-212ENST00000560467 BAG6P46379 1132 aa16.84■□□□□ 0.29
LDLR-212ENST00000560467 FAM182BQ5T319 152 aa16.84■□□□□ 0.29
LDLR-212ENST00000560467 EIF3AQ14152 1382 aaKnown RBP16.84■□□□□ 0.29
LDLR-212ENST00000560467 SPATA31A5Q5VU36 1347 aa16.82■□□□□ 0.28
LDLR-212ENST00000560467 SPATA31A7Q8IWB4 1347 aa16.82■□□□□ 0.28
LDLR-212ENST00000560467 PAK3O75914 559 aaPredicted RBP16.82■□□□□ 0.28
LDLR-212ENST00000560467 NGDNQ8NEJ9 315 aaKnown RBP16.82■□□□□ 0.28
LDLR-212ENST00000560467 DCAF11Q8TEB1 546 aa16.82■□□□□ 0.28
LDLR-212ENST00000560467 ALS2Q96Q42 1657 aa16.81■□□□□ 0.28
LDLR-212ENST00000560467 EN1Q05925 392 aaPredicted RBP16.81■□□□□ 0.28
LDLR-212ENST00000560467 SIN3AQ96ST3 1273 aa16.81■□□□□ 0.28
LDLR-212ENST00000560467 PRDM11Q9NQV5 511 aa16.81■□□□□ 0.28
LDLR-212ENST00000560467 TONSLQ96HA7 1378 aa16.8■□□□□ 0.28
LDLR-212ENST00000560467 COL14A1Q05707 1796 aaKnown RBP16.8■□□□□ 0.28
LDLR-212ENST00000560467 KIAA0232Q92628 1395 aa16.78■□□□□ 0.28
LDLR-212ENST00000560467 LRP5O75197 1615 aa16.78■□□□□ 0.28
LDLR-212ENST00000560467 CHRNA2Q15822 529 aa16.78■□□□□ 0.28
LDLR-212ENST00000560467 ATP7BP35670 1465 aa16.78■□□□□ 0.28
LDLR-212ENST00000560467 NUDT16Q96DE0 195 aaKnown RBP16.77■□□□□ 0.28
LDLR-212ENST00000560467 THSD7AQ9UPZ6 1657 aa16.76■□□□□ 0.27
LDLR-212ENST00000560467 NUTM2GQ5VZR2 741 aa16.76■□□□□ 0.27
LDLR-212ENST00000560467 SPATA31A1Q5TZJ5 1347 aa16.75■□□□□ 0.27
LDLR-212ENST00000560467 R3HDM1Q15032 1099 aaKnown RBP16.75■□□□□ 0.27
LDLR-212ENST00000560467 STRN4Q9NRL3 753 aa16.75■□□□□ 0.27
LDLR-212ENST00000560467 CRYBG1Q9Y4K1 1723 aa16.75■□□□□ 0.27
LDLR-212ENST00000560467 DISP2A7MBM2 1401 aa16.74■□□□□ 0.27
LDLR-212ENST00000560467 ZC3H6P61129 1189 aaKnown RBP16.74■□□□□ 0.27
LDLR-212ENST00000560467 EZH2Q15910 746 aaKnown RBP16.73■□□□□ 0.27
LDLR-212ENST00000560467 TRIM37O94972 964 aa16.72■□□□□ 0.27
LDLR-212ENST00000560467 CDK19Q9BWU1 502 aa16.72■□□□□ 0.27
LDLR-212ENST00000560467 STAC3Q96MF2 364 aa16.71■□□□□ 0.27
LDLR-212ENST00000560467 USP35Q9P2H5 1018 aa16.71■□□□□ 0.27
LDLR-212ENST00000560467 RGPD1P0DJD0 1748 aa16.7■□□□□ 0.26
LDLR-212ENST00000560467 ARHGEF28Q8N1W1 1705 aaKnown RBP16.7■□□□□ 0.26
LDLR-212ENST00000560467 POLR3AO14802 1390 aaPredicted RBP16.7■□□□□ 0.26
LDLR-212ENST00000560467 SSH2Q76I76 1423 aa16.7■□□□□ 0.26
LDLR-212ENST00000560467 ACEP12821 1306 aa16.7■□□□□ 0.26
LDLR-212ENST00000560467 FAM196AQ6ZSG2 479 aa16.69■□□□□ 0.26
LDLR-212ENST00000560467 CAMKK2Q96RR4 588 aa16.69■□□□□ 0.26
LDLR-212ENST00000560467 TNS1Q9HBL0 1735 aaKnown RBP16.69■□□□□ 0.26
LDLR-212ENST00000560467 PHRF1Q9P1Y6 1649 aaKnown RBP16.68■□□□□ 0.26
LDLR-212ENST00000560467 NBPF8Q3BBV2 869 aa16.68■□□□□ 0.26
LDLR-212ENST00000560467 LARP1Q6PKG0 1096 aaKnown RBP16.68■□□□□ 0.26
LDLR-212ENST00000560467 CCDC61Q9Y6R9 512 aa16.67■□□□□ 0.26
LDLR-212ENST00000560467 PLEKHG3A1L390 1219 aa16.66■□□□□ 0.26
LDLR-212ENST00000560467 APBA3O96018 575 aa16.66■□□□□ 0.26
LDLR-212ENST00000560467 EVA1CP58658 441 aa16.66■□□□□ 0.26
LDLR-212ENST00000560467 ITSN1Q15811 1721 aa16.66■□□□□ 0.26
LDLR-212ENST00000560467 NRKQ7Z2Y5 1582 aa16.66■□□□□ 0.26
LDLR-212ENST00000560467 USP19O94966 1318 aa16.66■□□□□ 0.26
LDLR-212ENST00000560467 BARGINQ6ZT62 677 aa16.65■□□□□ 0.26
LDLR-212ENST00000560467 ABTB2Q8N961 1025 aa16.65■□□□□ 0.26
LDLR-212ENST00000560467 L3MBTL2Q969R5 705 aa16.65■□□□□ 0.26
LDLR-212ENST00000560467 CAMTA1Q9Y6Y1 1673 aa16.65■□□□□ 0.26
LDLR-212ENST00000560467 PDE3BQ13370 1112 aa16.64■□□□□ 0.25
LDLR-212ENST00000560467 NBPF1Q3BBV0 1214 aa16.64■□□□□ 0.25
LDLR-212ENST00000560467 TCP11L2Q8N4U5 519 aa16.64■□□□□ 0.25
LDLR-212ENST00000560467 TOPAZ1Q8N9V7 1692 aa16.64■□□□□ 0.25
LDLR-212ENST00000560467 CPDO75976 1380 aa16.64■□□□□ 0.25
LDLR-212ENST00000560467 PARD3Q8TEW0 1356 aa16.63■□□□□ 0.25
LDLR-212ENST00000560467 PPIP5K1Q6PFW1 1433 aa16.62■□□□□ 0.25
LDLR-212ENST00000560467 SRPK2P78362 688 aaKnown RBP16.61■□□□□ 0.25
LDLR-212ENST00000560467 CABP2Q9NPB3 220 aa16.61■□□□□ 0.25
LDLR-212ENST00000560467 LMO7Q8WWI1 1683 aa16.6■□□□□ 0.25
LDLR-212ENST00000560467 GCP02774 474 aa16.6■□□□□ 0.25
LDLR-212ENST00000560467 COL5A2P05997 1499 aaPredicted RBP16.6■□□□□ 0.25
LDLR-212ENST00000560467 ZBTB7CA1YPR0 619 aa16.59■□□□□ 0.25
LDLR-212ENST00000560467 CENPJQ9HC77 1338 aaPredicted RBP16.59■□□□□ 0.25
LDLR-212ENST00000560467 NLRP13Q86W25 1043 aa16.58■□□□□ 0.24
LDLR-212ENST00000560467 THRAP3Q9Y2W1 955 aaKnown RBP16.56■□□□□ 0.24
LDLR-212ENST00000560467 NBPF14Q5TI25 921 aa16.55■□□□□ 0.24
LDLR-212ENST00000560467 CABP1Q9NZU7 370 aa16.55■□□□□ 0.24
LDLR-212ENST00000560467 RREB1Q92766 1687 aa16.55■□□□□ 0.24
LDLR-212ENST00000560467 USP6P35125 1406 aa16.54■□□□□ 0.24
LDLR-212ENST00000560467 CRB1P82279 1406 aa16.54■□□□□ 0.24
LDLR-212ENST00000560467 NUP188Q5SRE5 1749 aa16.54■□□□□ 0.24
LDLR-212ENST00000560467 KIAA1210Q9ULL0 1709 aa16.54■□□□□ 0.24
LDLR-212ENST00000560467 NLRP6P59044 892 aa16.54■□□□□ 0.24
LDLR-212ENST00000560467 OVOS2A0A0G2JMS6 1433 aa16.53■□□□□ 0.24
LDLR-212ENST00000560467 OVOS2A0A0J9YW53 1432 aa16.53■□□□□ 0.24
LDLR-212ENST00000560467 OVOS2Q6IE36 1432 aa16.53■□□□□ 0.24
LDLR-212ENST00000560467 BRD4O60885 1362 aaPredicted RBP16.52■□□□□ 0.24
LDLR-212ENST00000560467 AATKQ6ZMQ8 1374 aa16.52■□□□□ 0.24
LDLR-212ENST00000560467 SLIT3O75094 1523 aa16.51■□□□□ 0.23
LDLR-212ENST00000560467 PTF1AQ7RTS3 328 aa16.51■□□□□ 0.23
LDLR-212ENST00000560467 PARP4Q9UKK3 1724 aaKnown RBP16.5■□□□□ 0.23
LDLR-212ENST00000560467 DDB1Q16531 1140 aa16.5■□□□□ 0.23
LDLR-212ENST00000560467 TOM1L2Q6ZVM7 507 aa16.5■□□□□ 0.23
LDLR-212ENST00000560467 ANO8Q9HCE9 1232 aaPredicted RBP16.5■□□□□ 0.23
LDLR-212ENST00000560467 SPON1Q9HCB6 807 aa16.49■□□□□ 0.23
LDLR-212ENST00000560467 PPP1R1BQ9UD71 204 aaPredicted RBP16.49■□□□□ 0.23
LDLR-212ENST00000560467 AXIN2Q9Y2T1 843 aa16.49■□□□□ 0.23
LDLR-212ENST00000560467 LRRC37A3O60309 1634 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms