RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 CCDC61Q9Y6R9 512 aa21.08■□□□□ 0.97
SHMT2-235ENST00000557740 A0A0G2JS52 829 aa21.07■□□□□ 0.96
SHMT2-235ENST00000557740 MYT1Q01538 1121 aa21.07■□□□□ 0.96
SHMT2-235ENST00000557740 L3MBTL2Q969R5 705 aa21.07■□□□□ 0.96
SHMT2-235ENST00000557740 PRDM11Q9NQV5 511 aa21.07■□□□□ 0.96
SHMT2-235ENST00000557740 TOPAZ1Q8N9V7 1692 aa21.07■□□□□ 0.96
SHMT2-235ENST00000557740 COL14A1Q05707 1796 aaKnown RBP21.07■□□□□ 0.96
SHMT2-235ENST00000557740 POLR3AO14802 1390 aaPredicted RBP21.07■□□□□ 0.96
SHMT2-235ENST00000557740 ACEP12821 1306 aa21.06■□□□□ 0.96
SHMT2-235ENST00000557740 SRPK2P78362 688 aaKnown RBP21.06■□□□□ 0.96
SHMT2-235ENST00000557740 PLEKHG3A1L390 1219 aa21.04■□□□□ 0.96
SHMT2-235ENST00000557740 NRAPQ86VF7 1730 aa21.04■□□□□ 0.96
SHMT2-235ENST00000557740 NEUROD1Q13562 356 aa21.03■□□□□ 0.96
SHMT2-235ENST00000557740 NBPF8Q3BBV2 869 aa21.03■□□□□ 0.96
SHMT2-235ENST00000557740 NUTM2GQ5VZR2 741 aa21.03■□□□□ 0.96
SHMT2-235ENST00000557740 SIN3AQ96ST3 1273 aa21.03■□□□□ 0.96
SHMT2-235ENST00000557740 CRYBG1Q9Y4K1 1723 aa21.03■□□□□ 0.96
SHMT2-235ENST00000557740 EP400Q96L91 3159 aa21.03■□□□□ 0.96
SHMT2-235ENST00000557740 BLMP54132 1417 aaPredicted RBP21.03■□□□□ 0.96
SHMT2-235ENST00000557740 ONECUT3O60422 494 aaPredicted RBP21.02■□□□□ 0.96
SHMT2-235ENST00000557740 PPIP5K1Q6PFW1 1433 aa21.02■□□□□ 0.96
SHMT2-235ENST00000557740 KIAA0232Q92628 1395 aa21.01■□□□□ 0.95
SHMT2-235ENST00000557740 FAM98CQ17RN3 349 aaKnown RBP21.01■□□□□ 0.95
SHMT2-235ENST00000557740 KRT27Q7Z3Y8 459 aa21.01■□□□□ 0.95
SHMT2-235ENST00000557740 QRICH2Q9H0J4 1663 aa21■□□□□ 0.95
SHMT2-235ENST00000557740 SF3B2Q13435 895 aaKnown RBP21■□□□□ 0.95
SHMT2-235ENST00000557740 CABP2Q9NPB3 220 aa21■□□□□ 0.95
SHMT2-235ENST00000557740 ROCK2O75116 1388 aaKnown RBP20.99■□□□□ 0.95
SHMT2-235ENST00000557740 ZRANB1Q9UGI0 708 aa20.99■□□□□ 0.95
SHMT2-235ENST00000557740 PHRF1Q9P1Y6 1649 aaKnown RBP20.99■□□□□ 0.95
SHMT2-235ENST00000557740 SPATA31A5Q5VU36 1347 aa20.99■□□□□ 0.95
SHMT2-235ENST00000557740 SPATA31A7Q8IWB4 1347 aa20.99■□□□□ 0.95
SHMT2-235ENST00000557740 BRWD3Q6RI45 1802 aa20.99■□□□□ 0.95
SHMT2-235ENST00000557740 ABTB2Q8N961 1025 aa20.98■□□□□ 0.95
SHMT2-235ENST00000557740 ZC3H6P61129 1189 aaKnown RBP20.97■□□□□ 0.95
SHMT2-235ENST00000557740 CHRNA2Q15822 529 aa20.97■□□□□ 0.95
SHMT2-235ENST00000557740 TRPM1Q7Z4N2 1603 aa20.96■□□□□ 0.95
SHMT2-235ENST00000557740 STRN4Q9NRL3 753 aa20.95■□□□□ 0.94
SHMT2-235ENST00000557740 EVC2Q86UK5 1308 aa20.95■□□□□ 0.94
SHMT2-235ENST00000557740 BRD4O60885 1362 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-235ENST00000557740 NRKQ7Z2Y5 1582 aa20.94■□□□□ 0.94
SHMT2-235ENST00000557740 USP19O94966 1318 aa20.94■□□□□ 0.94
SHMT2-235ENST00000557740 NLRP13Q86W25 1043 aa20.93■□□□□ 0.94
SHMT2-235ENST00000557740 CABP1Q9NZU7 370 aa20.93■□□□□ 0.94
SHMT2-235ENST00000557740 SPATA31A1Q5TZJ5 1347 aa20.92■□□□□ 0.94
SHMT2-235ENST00000557740 USP6P35125 1406 aa20.92■□□□□ 0.94
SHMT2-235ENST00000557740 CPDO75976 1380 aa20.91■□□□□ 0.94
SHMT2-235ENST00000557740 DEFB132Q7Z7B7 95 aa20.91■□□□□ 0.94
SHMT2-235ENST00000557740 EVA1CP58658 441 aa20.9■□□□□ 0.94
SHMT2-235ENST00000557740 THSD7AQ9UPZ6 1657 aa20.89■□□□□ 0.94
SHMT2-235ENST00000557740 SSH2Q76I76 1423 aa20.89■□□□□ 0.94
SHMT2-235ENST00000557740 GCP02774 474 aa20.88■□□□□ 0.93
SHMT2-235ENST00000557740 BAG6P46379 1132 aa20.87■□□□□ 0.93
SHMT2-235ENST00000557740 USP35Q9P2H5 1018 aa20.87■□□□□ 0.93
SHMT2-235ENST00000557740 NLRP6P59044 892 aa20.86■□□□□ 0.93
SHMT2-235ENST00000557740 TONSLQ96HA7 1378 aa20.85■□□□□ 0.93
SHMT2-235ENST00000557740 ZBTB7CA1YPR0 619 aa20.85■□□□□ 0.93
SHMT2-235ENST00000557740 FAM182BQ5T319 152 aa20.85■□□□□ 0.93
SHMT2-235ENST00000557740 CAMTA1Q9Y6Y1 1673 aa20.85■□□□□ 0.93
SHMT2-235ENST00000557740 CARD11Q9BXL7 1154 aa20.84■□□□□ 0.93
SHMT2-235ENST00000557740 LMO7Q8WWI1 1683 aa20.83■□□□□ 0.93
SHMT2-235ENST00000557740 LARP1Q6PKG0 1096 aaKnown RBP20.83■□□□□ 0.93
SHMT2-235ENST00000557740 BARGINQ6ZT62 677 aa20.82■□□□□ 0.92
SHMT2-235ENST00000557740 TCP11L2Q8N4U5 519 aa20.82■□□□□ 0.92
SHMT2-235ENST00000557740 ZNF692Q9BU19 519 aaPredicted RBP20.82■□□□□ 0.92
SHMT2-235ENST00000557740 SLIT3O75094 1523 aa20.82■□□□□ 0.92
SHMT2-235ENST00000557740 SBNO2Q9Y2G9 1366 aa20.81■□□□□ 0.92
SHMT2-235ENST00000557740 COL5A2P05997 1499 aaPredicted RBP20.81■□□□□ 0.92
SHMT2-235ENST00000557740 PIK3C2AO00443 1686 aa20.8■□□□□ 0.92
SHMT2-235ENST00000557740 TTC21BQ7Z4L5 1316 aa20.79■□□□□ 0.92
SHMT2-235ENST00000557740 RGPD1P0DJD0 1748 aa20.79■□□□□ 0.92
SHMT2-235ENST00000557740 PDE3BQ13370 1112 aa20.79■□□□□ 0.92
SHMT2-235ENST00000557740 FAM196AQ6ZSG2 479 aa20.79■□□□□ 0.92
SHMT2-235ENST00000557740 AATKQ6ZMQ8 1374 aa20.79■□□□□ 0.92
SHMT2-235ENST00000557740 TTC21AQ8NDW8 1320 aa20.78■□□□□ 0.92
SHMT2-235ENST00000557740 THRAP3Q9Y2W1 955 aaKnown RBP20.78■□□□□ 0.92
SHMT2-235ENST00000557740 SRCAPQ6ZRS2 3230 aa20.78■□□□□ 0.92
SHMT2-235ENST00000557740 KTN1Q86UP2 1357 aaKnown RBP20.77■□□□□ 0.92
SHMT2-235ENST00000557740 DISP2A7MBM2 1401 aa20.77■□□□□ 0.91
SHMT2-235ENST00000557740 CRB1P82279 1406 aa20.77■□□□□ 0.91
SHMT2-235ENST00000557740 CPSF1Q10570 1443 aaKnown RBP20.77■□□□□ 0.91
SHMT2-235ENST00000557740 EN1Q05925 392 aaPredicted RBP20.76■□□□□ 0.91
SHMT2-235ENST00000557740 TRIM37O94972 964 aa20.75■□□□□ 0.91
SHMT2-235ENST00000557740 KCNH5Q8NCM2 988 aa20.75■□□□□ 0.91
SHMT2-235ENST00000557740 AKAP12Q02952 1782 aa20.74■□□□□ 0.91
SHMT2-235ENST00000557740 SOX12O15370 315 aa20.74■□□□□ 0.91
SHMT2-235ENST00000557740 TRIM26Q12899 539 aaPredicted RBP20.74■□□□□ 0.91
SHMT2-235ENST00000557740 TNS1Q9HBL0 1735 aaKnown RBP20.73■□□□□ 0.91
SHMT2-235ENST00000557740 TOM1L2Q6ZVM7 507 aa20.72■□□□□ 0.91
SHMT2-235ENST00000557740 TMC1Q8TDI8 760 aa20.72■□□□□ 0.91
SHMT2-235ENST00000557740 PSDA5PKW4 1024 aaPredicted RBP20.71■□□□□ 0.91
SHMT2-235ENST00000557740 APBA3O96018 575 aa20.7■□□□□ 0.9
SHMT2-235ENST00000557740 HDGFL2Q7Z4V5 671 aaPredicted RBP20.7■□□□□ 0.9
SHMT2-235ENST00000557740 ARHGEF25Q86VW2 580 aa20.7■□□□□ 0.9
SHMT2-235ENST00000557740 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.7■□□□□ 0.9
SHMT2-235ENST00000557740 WDR17Q8IZU2 1322 aa20.7■□□□□ 0.9
SHMT2-235ENST00000557740 PARP4Q9UKK3 1724 aaKnown RBP20.69■□□□□ 0.9
SHMT2-235ENST00000557740 NFAT5O94916 1531 aa20.68■□□□□ 0.9
SHMT2-235ENST00000557740 MON2Q7Z3U7 1717 aa20.68■□□□□ 0.9
SHMT2-235ENST00000557740 CSB-PGBD3P0DP91 1061 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms