RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 GLMNQ92990 594 aa5.47□□□□□ -1.53
TRAV28-201ENST00000557548 CALR3Q96L12 384 aaKnown RBP5.47□□□□□ -1.53
TRAV28-201ENST00000557548 ATP13A2Q9NQ11 1180 aa5.47□□□□□ -1.53
TRAV28-201ENST00000557548 DDX11L8A8MPP1 907 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 TRIM6-TRIM34B2RNG4 842 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 AP1G2O75843 785 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 NDUFV2P19404 249 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 SULF1Q8IWU6 871 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 KIFC2Q96AC6 838 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 EYA1Q99502 592 aa5.46□□□□□ -1.54
TRAV28-201ENST00000557548 LILRB3O75022 631 aa5.45□□□□□ -1.54
TRAV28-201ENST00000557548 ADAM23O75077 832 aa5.45□□□□□ -1.54
TRAV28-201ENST00000557548 USP17L8P0C7I0 530 aa5.45□□□□□ -1.54
TRAV28-201ENST00000557548 IRF5Q13568 498 aa5.45□□□□□ -1.54
TRAV28-201ENST00000557548 RTL5Q5HYW3 569 aaPredicted RBP5.45□□□□□ -1.54
TRAV28-201ENST00000557548 PRM3Q9NNZ6 103 aa5.45□□□□□ -1.54
TRAV28-201ENST00000557548 PCDHB15Q9Y5E8 787 aa5.45□□□□□ -1.54
TRAV28-201ENST00000557548 NUTM2BA6NNL0 878 aaPredicted RBP5.44□□□□□ -1.54
TRAV28-201ENST00000557548 NUTM2EB1AL46 878 aaPredicted RBP5.44□□□□□ -1.54
TRAV28-201ENST00000557548 C3orf80F5H4A9 247 aa5.44□□□□□ -1.54
TRAV28-201ENST00000557548 SOCS7O14512 581 aa5.44□□□□□ -1.54
TRAV28-201ENST00000557548 PPP1R15AO75807 674 aaPredicted RBP5.44□□□□□ -1.54
TRAV28-201ENST00000557548 NUTM2DQ5VT03 806 aaPredicted RBP5.44□□□□□ -1.54
TRAV28-201ENST00000557548 NUDT18Q6ZVK8 323 aa5.44□□□□□ -1.54
TRAV28-201ENST00000557548 NUTM2AQ8IVF1 878 aaPredicted RBP5.44□□□□□ -1.54
TRAV28-201ENST00000557548 CABLES1Q8TDN4 633 aa5.44□□□□□ -1.54
TRAV28-201ENST00000557548 TSKSQ9UJT2 592 aa5.44□□□□□ -1.54
TRAV28-201ENST00000557548 ZPR1O75312 459 aa5.43□□□□□ -1.54
TRAV28-201ENST00000557548 DNAJB2P25686 324 aa5.43□□□□□ -1.54
TRAV28-201ENST00000557548 FOXK2Q01167 660 aa5.43□□□□□ -1.54
TRAV28-201ENST00000557548 RDH13Q8NBN7 331 aa5.43□□□□□ -1.54
TRAV28-201ENST00000557548 PKD2L1Q9P0L9 805 aa5.43□□□□□ -1.54
TRAV28-201ENST00000557548 DNMT3AQ9Y6K1 912 aaPredicted RBP5.43□□□□□ -1.54
TRAV28-201ENST00000557548 NBPF26B4DH59 902 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 GJA5P36382 358 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 APLP1P51693 650 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 COPS2P61201 443 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 SAMD7Q7Z3H4 446 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 TMEM134Q9H6X4 195 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 TOR4AQ9NXH8 423 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 PNMA3Q9UL41 463 aa5.42□□□□□ -1.54
TRAV28-201ENST00000557548 FOXC1Q12948 553 aa5.41□□□□□ -1.54
TRAV28-201ENST00000557548 TMCO4Q5TGY1 634 aa5.41□□□□□ -1.54
TRAV28-201ENST00000557548 Q8N3U1 123 aa5.41□□□□□ -1.54
TRAV28-201ENST00000557548 TATDN2Q93075 761 aa5.41□□□□□ -1.54
TRAV28-201ENST00000557548 GJD4Q96KN9 370 aaPredicted RBP5.41□□□□□ -1.54
TRAV28-201ENST00000557548 KRTAP4-7Q9BYR0 210 aa5.41□□□□□ -1.54
TRAV28-201ENST00000557548 GZF1Q9H116 711 aaPredicted RBP5.41□□□□□ -1.54
TRAV28-201ENST00000557548 NDUFB9Q9Y6M9 179 aa5.41□□□□□ -1.54
TRAV28-201ENST00000557548 ACIN1Q9UKV3 1341 aaKnown RBP5.41□□□□□ -1.54
TRAV28-201ENST00000557548 H3BM21 787 aa5.4□□□□□ -1.54
TRAV28-201ENST00000557548 SMAPO00193 183 aa5.4□□□□□ -1.54
TRAV28-201ENST00000557548 KDM4AO75164 1064 aa5.4□□□□□ -1.54
TRAV28-201ENST00000557548 HDGFL1Q5TGJ6 251 aa5.4□□□□□ -1.54
TRAV28-201ENST00000557548 PRPF38BQ5VTL8 546 aaKnown RBP5.4□□□□□ -1.54
TRAV28-201ENST00000557548 ADAMTS19Q8TE59 1207 aa5.4□□□□□ -1.54
TRAV28-201ENST00000557548 ZBTB3Q9H5J0 574 aa5.4□□□□□ -1.54
TRAV28-201ENST00000557548 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.39□□□□□ -1.55
TRAV28-201ENST00000557548 HOXA2O43364 376 aa5.39□□□□□ -1.55
TRAV28-201ENST00000557548 RFX1P22670 979 aa5.39□□□□□ -1.55
TRAV28-201ENST00000557548 CYP4X1Q8N118 509 aa5.39□□□□□ -1.55
TRAV28-201ENST00000557548 PBXIP1Q96AQ6 731 aa5.39□□□□□ -1.55
TRAV28-201ENST00000557548 HMX1Q9NP08 348 aaPredicted RBP5.39□□□□□ -1.55
TRAV28-201ENST00000557548 GPR37L1O60883 481 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 FDX1P10109 184 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 MFAP1P55081 439 aaKnown RBP5.38□□□□□ -1.55
TRAV28-201ENST00000557548 GUCA2AQ02747 115 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 PACS2Q86VP3 889 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 RGS22Q8NE09 1264 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 HLA-CQ95604 372 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 PCDHGC3Q9UN70 934 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 MTMR7Q9Y216 660 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 ERBB4Q15303 1308 aa5.38□□□□□ -1.55
TRAV28-201ENST00000557548 GCGRP47871 477 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 USP46P62068 366 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 CTDSPL2Q05D32 466 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 PDE4CQ08493 712 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 VAC14Q08AM6 782 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 WASHC4Q2M389 1173 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 CFAP70Q5T0N1 1121 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 TSC1Q92574 1164 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 TRIM34Q9BYJ4 488 aa5.37□□□□□ -1.55
TRAV28-201ENST00000557548 CARNS1A5YM72 827 aa5.35□□□□□ -1.55
TRAV28-201ENST00000557548 PPEF1O14829 653 aaPredicted RBP5.35□□□□□ -1.55
TRAV28-201ENST00000557548 CSB-PGBD3P0DP91 1061 aa5.35□□□□□ -1.55
TRAV28-201ENST00000557548 MTMR2Q13614 643 aa5.35□□□□□ -1.55
TRAV28-201ENST00000557548 FOXD4L5Q5VV16 416 aaPredicted RBP5.35□□□□□ -1.55
TRAV28-201ENST00000557548 HELBQ8NG08 1087 aaPredicted RBP5.35□□□□□ -1.55
TRAV28-201ENST00000557548 LRRN4Q8WUT4 740 aa5.35□□□□□ -1.55
TRAV28-201ENST00000557548 FOXD4L4Q8WXT5 416 aaPredicted RBP5.35□□□□□ -1.55
TRAV28-201ENST00000557548 PPP1R12CQ9BZL4 782 aa5.35□□□□□ -1.55
TRAV28-201ENST00000557548 USTQ9Y2C2 406 aa5.35□□□□□ -1.55
TRAV28-201ENST00000557548 CFAP99D6REC4 459 aa5.34□□□□□ -1.55
TRAV28-201ENST00000557548 SLC10A3P09131 477 aa5.34□□□□□ -1.55
TRAV28-201ENST00000557548 SRPK2P78362 688 aaKnown RBP5.34□□□□□ -1.55
TRAV28-201ENST00000557548 RSPH4AQ5TD94 716 aa5.34□□□□□ -1.55
TRAV28-201ENST00000557548 EPS8L1Q8TE68 723 aa5.34□□□□□ -1.55
TRAV28-201ENST00000557548 PALM3A6NDB9 673 aaPredicted RBP5.33□□□□□ -1.56
TRAV28-201ENST00000557548 PATL2C9JE40 543 aaKnown RBP5.33□□□□□ -1.56
TRAV28-201ENST00000557548 BRD1O95696 1058 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms