RNA–Protein interactions for RNA: ENST00000556571.1

ACTN1-221, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-221ENST00000556571 LRP5O75197 1615 aa17.5■□□□□ 0.39
ACTN1-221ENST00000556571 ADGRB1O14514 1584 aa17.5■□□□□ 0.39
ACTN1-221ENST00000556571 PAK3O75914 559 aaPredicted RBP17.5■□□□□ 0.39
ACTN1-221ENST00000556571 STAC3Q96MF2 364 aa17.5■□□□□ 0.39
ACTN1-221ENST00000556571 PRDM11Q9NQV5 511 aa17.5■□□□□ 0.39
ACTN1-221ENST00000556571 FAM182BQ5T319 152 aa17.49■□□□□ 0.39
ACTN1-221ENST00000556571 COL14A1Q05707 1796 aaKnown RBP17.48■□□□□ 0.39
ACTN1-221ENST00000556571 TULP4Q9NRJ4 1543 aa17.48■□□□□ 0.39
ACTN1-221ENST00000556571 NRAPQ86VF7 1730 aa17.48■□□□□ 0.39
ACTN1-221ENST00000556571 TRPM3Q9HCF6 1732 aaPredicted RBP17.48■□□□□ 0.39
ACTN1-221ENST00000556571 DCAF11Q8TEB1 546 aa17.48■□□□□ 0.39
ACTN1-221ENST00000556571 KDM2AQ9Y2K7 1162 aa17.48■□□□□ 0.39
ACTN1-221ENST00000556571 ALS2Q96Q42 1657 aa17.46■□□□□ 0.39
ACTN1-221ENST00000556571 R3HDM1Q15032 1099 aaKnown RBP17.46■□□□□ 0.39
ACTN1-221ENST00000556571 DISP2A7MBM2 1401 aa17.46■□□□□ 0.39
ACTN1-221ENST00000556571 FAM196AQ6ZSG2 479 aa17.45■□□□□ 0.38
ACTN1-221ENST00000556571 SPATA31A1Q5TZJ5 1347 aa17.45■□□□□ 0.38
ACTN1-221ENST00000556571 NUDT16Q96DE0 195 aaKnown RBP17.44■□□□□ 0.38
ACTN1-221ENST00000556571 KIAA0232Q92628 1395 aa17.43■□□□□ 0.38
ACTN1-221ENST00000556571 RAB3GAP2Q9H2M9 1393 aa17.43■□□□□ 0.38
ACTN1-221ENST00000556571 EZH2Q15910 746 aaKnown RBP17.43■□□□□ 0.38
ACTN1-221ENST00000556571 RGPD1P0DJD0 1748 aa17.42■□□□□ 0.38
ACTN1-221ENST00000556571 TRIM37O94972 964 aa17.42■□□□□ 0.38
ACTN1-221ENST00000556571 CHRNA2Q15822 529 aa17.42■□□□□ 0.38
ACTN1-221ENST00000556571 CAMKK2Q96RR4 588 aa17.42■□□□□ 0.38
ACTN1-221ENST00000556571 STRN4Q9NRL3 753 aa17.42■□□□□ 0.38
ACTN1-221ENST00000556571 ZC3H6P61129 1189 aaKnown RBP17.41■□□□□ 0.38
ACTN1-221ENST00000556571 THSD7AQ9UPZ6 1657 aa17.41■□□□□ 0.38
ACTN1-221ENST00000556571 APBA3O96018 575 aa17.39■□□□□ 0.37
ACTN1-221ENST00000556571 EVA1CP58658 441 aa17.39■□□□□ 0.37
ACTN1-221ENST00000556571 BARGINQ6ZT62 677 aa17.39■□□□□ 0.37
ACTN1-221ENST00000556571 CDK19Q9BWU1 502 aa17.39■□□□□ 0.37
ACTN1-221ENST00000556571 PARD3Q8TEW0 1356 aa17.39■□□□□ 0.37
ACTN1-221ENST00000556571 ATP7BP35670 1465 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 PDE3BQ13370 1112 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 NBPF8Q3BBV2 869 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 NUTM2GQ5VZR2 741 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 USP35Q9P2H5 1018 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 CCDC61Q9Y6R9 512 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 CRYBG1Q9Y4K1 1723 aa17.38■□□□□ 0.37
ACTN1-221ENST00000556571 POLR3AO14802 1390 aaPredicted RBP17.37■□□□□ 0.37
ACTN1-221ENST00000556571 PLEKHG3A1L390 1219 aa17.36■□□□□ 0.37
ACTN1-221ENST00000556571 ACEP12821 1306 aa17.36■□□□□ 0.37
ACTN1-221ENST00000556571 ABTB2Q8N961 1025 aa17.35■□□□□ 0.37
ACTN1-221ENST00000556571 NBPF14Q5TI25 921 aa17.34■□□□□ 0.37
ACTN1-221ENST00000556571 SSH2Q76I76 1423 aa17.34■□□□□ 0.37
ACTN1-221ENST00000556571 TCP11L2Q8N4U5 519 aa17.34■□□□□ 0.37
ACTN1-221ENST00000556571 TNS1Q9HBL0 1735 aaKnown RBP17.34■□□□□ 0.37
ACTN1-221ENST00000556571 LARP1Q6PKG0 1096 aaKnown RBP17.33■□□□□ 0.36
ACTN1-221ENST00000556571 THRAP3Q9Y2W1 955 aaKnown RBP17.33■□□□□ 0.36
ACTN1-221ENST00000556571 ITSN1Q15811 1721 aa17.33■□□□□ 0.36
ACTN1-221ENST00000556571 CPDO75976 1380 aa17.32■□□□□ 0.36
ACTN1-221ENST00000556571 C11orf95C9JLR9 678 aaPredicted RBP17.31■□□□□ 0.36
ACTN1-221ENST00000556571 NLRP13Q86W25 1043 aa17.31■□□□□ 0.36
ACTN1-221ENST00000556571 ARHGEF28Q8N1W1 1705 aaKnown RBP17.3■□□□□ 0.36
ACTN1-221ENST00000556571 USP19O94966 1318 aa17.3■□□□□ 0.36
ACTN1-221ENST00000556571 PHRF1Q9P1Y6 1649 aaKnown RBP17.3■□□□□ 0.36
ACTN1-221ENST00000556571 GCP02774 474 aa17.3■□□□□ 0.36
ACTN1-221ENST00000556571 CAMTA1Q9Y6Y1 1673 aa17.29■□□□□ 0.36
ACTN1-221ENST00000556571 SRPK2P78362 688 aaKnown RBP17.27■□□□□ 0.36
ACTN1-221ENST00000556571 NRKQ7Z2Y5 1582 aa17.26■□□□□ 0.35
ACTN1-221ENST00000556571 BRD4O60885 1362 aaPredicted RBP17.26■□□□□ 0.35
ACTN1-221ENST00000556571 SPON1Q9HCB6 807 aa17.25■□□□□ 0.35
ACTN1-221ENST00000556571 TOPAZ1Q8N9V7 1692 aa17.24■□□□□ 0.35
ACTN1-221ENST00000556571 NBPF1Q3BBV0 1214 aa17.24■□□□□ 0.35
ACTN1-221ENST00000556571 LMO7Q8WWI1 1683 aa17.23■□□□□ 0.35
ACTN1-221ENST00000556571 PPIP5K1Q6PFW1 1433 aa17.23■□□□□ 0.35
ACTN1-221ENST00000556571 KCNQ2O43526 872 aa17.23■□□□□ 0.35
ACTN1-221ENST00000556571 YY1P25490 414 aa17.23■□□□□ 0.35
ACTN1-221ENST00000556571 CABP2Q9NPB3 220 aa17.23■□□□□ 0.35
ACTN1-221ENST00000556571 PPP1R1BQ9UD71 204 aaPredicted RBP17.23■□□□□ 0.35
ACTN1-221ENST00000556571 COL5A2P05997 1499 aaPredicted RBP17.23■□□□□ 0.35
ACTN1-221ENST00000556571 CENPJQ9HC77 1338 aaPredicted RBP17.22■□□□□ 0.35
ACTN1-221ENST00000556571 CRB1P82279 1406 aa17.22■□□□□ 0.35
ACTN1-221ENST00000556571 DCAF8L1A6NGE4 600 aa17.22■□□□□ 0.35
ACTN1-221ENST00000556571 PLSCR1O15162 318 aa17.22■□□□□ 0.35
ACTN1-221ENST00000556571 NLRP6P59044 892 aa17.22■□□□□ 0.35
ACTN1-221ENST00000556571 RREB1Q92766 1687 aa17.22■□□□□ 0.35
ACTN1-221ENST00000556571 AATKQ6ZMQ8 1374 aa17.21■□□□□ 0.35
ACTN1-221ENST00000556571 ZBTB7CA1YPR0 619 aa17.21■□□□□ 0.35
ACTN1-221ENST00000556571 OVOS2A0A0G2JMS6 1433 aa17.21■□□□□ 0.34
ACTN1-221ENST00000556571 OVOS2A0A0J9YW53 1432 aa17.21■□□□□ 0.34
ACTN1-221ENST00000556571 OVOS2Q6IE36 1432 aa17.21■□□□□ 0.34
ACTN1-221ENST00000556571 DDB1Q16531 1140 aa17.2■□□□□ 0.34
ACTN1-221ENST00000556571 CABP1Q9NZU7 370 aa17.2■□□□□ 0.34
ACTN1-221ENST00000556571 NUP188Q5SRE5 1749 aa17.2■□□□□ 0.34
ACTN1-221ENST00000556571 KIAA1210Q9ULL0 1709 aa17.2■□□□□ 0.34
ACTN1-221ENST00000556571 TOM1L2Q6ZVM7 507 aa17.19■□□□□ 0.34
ACTN1-221ENST00000556571 CDCA7Q9BWT1 371 aaPredicted RBP17.18■□□□□ 0.34
ACTN1-221ENST00000556571 BCL11BQ9C0K0 894 aaPredicted RBP17.18■□□□□ 0.34
ACTN1-221ENST00000556571 PARP4Q9UKK3 1724 aaKnown RBP17.18■□□□□ 0.34
ACTN1-221ENST00000556571 NINLQ9Y2I6 1382 aa17.17■□□□□ 0.34
ACTN1-221ENST00000556571 USP6P35125 1406 aa17.17■□□□□ 0.34
ACTN1-221ENST00000556571 WDR17Q8IZU2 1322 aa17.15■□□□□ 0.34
ACTN1-221ENST00000556571 AXIN2Q9Y2T1 843 aa17.14■□□□□ 0.33
ACTN1-221ENST00000556571 SLIT3O75094 1523 aa17.14■□□□□ 0.33
ACTN1-221ENST00000556571 ARHGEF25Q86VW2 580 aa17.13■□□□□ 0.33
ACTN1-221ENST00000556571 MARCH10Q8NA82 808 aaPredicted RBP17.13■□□□□ 0.33
ACTN1-221ENST00000556571 KCNH5Q8NCM2 988 aa17.13■□□□□ 0.33
ACTN1-221ENST00000556571 ZNF692Q9BU19 519 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms