RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 NSD3Q9BZ95 1437 aa17.04■□□□□ 0.32
SHMT2-221ENST00000555773 FYB1O15117 783 aa17.04■□□□□ 0.32
SHMT2-221ENST00000555773 AMER1Q5JTC6 1135 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-221ENST00000555773 NPC1L1Q9UHC9 1359 aa17.03■□□□□ 0.32
SHMT2-221ENST00000555773 SPATA31A3Q5VYP0 1347 aa17.03■□□□□ 0.32
SHMT2-221ENST00000555773 ABTB2Q8N961 1025 aa17.03■□□□□ 0.32
SHMT2-221ENST00000555773 MYOM1P52179 1685 aa17.03■□□□□ 0.32
SHMT2-221ENST00000555773 PXDNQ92626 1479 aa17.01■□□□□ 0.31
SHMT2-221ENST00000555773 NLRP6P59044 892 aa17.01■□□□□ 0.31
SHMT2-221ENST00000555773 NLRP13Q86W25 1043 aa17.01■□□□□ 0.31
SHMT2-221ENST00000555773 FBXO41Q8TF61 875 aa17.01■□□□□ 0.31
SHMT2-221ENST00000555773 NSD2O96028 1365 aa17.01■□□□□ 0.31
SHMT2-221ENST00000555773 ROBO1Q9Y6N7 1651 aa17.01■□□□□ 0.31
SHMT2-221ENST00000555773 LMOD2Q6P5Q4 547 aa17■□□□□ 0.31
SHMT2-221ENST00000555773 NME9Q86XW9 330 aa17■□□□□ 0.31
SHMT2-221ENST00000555773 COG3Q96JB2 828 aa17■□□□□ 0.31
SHMT2-221ENST00000555773 ARHGEF10O15013 1369 aa17■□□□□ 0.31
SHMT2-221ENST00000555773 USP31Q70CQ4 1352 aa17■□□□□ 0.31
SHMT2-221ENST00000555773 GGNBP2Q9H3C7 697 aa16.99■□□□□ 0.31
SHMT2-221ENST00000555773 AHDC1Q5TGY3 1603 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-221ENST00000555773 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
SHMT2-221ENST00000555773 CC2D1BQ5T0F9 858 aaKnown RBP16.97■□□□□ 0.31
SHMT2-221ENST00000555773 DIEXFQ68CQ4 756 aaKnown RBP16.97■□□□□ 0.31
SHMT2-221ENST00000555773 MORC1Q86VD1 984 aa16.97■□□□□ 0.31
SHMT2-221ENST00000555773 AKAP12Q02952 1782 aa16.96■□□□□ 0.31
SHMT2-221ENST00000555773 HSPA1LP34931 641 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 RALBP1Q15311 655 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 NUTM2GQ5VZR2 741 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 KCNH5Q8NCM2 988 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 ZRANB1Q9UGI0 708 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 MON2Q7Z3U7 1717 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 NHSL1Q5SYE7 1610 aa16.95■□□□□ 0.3
SHMT2-221ENST00000555773 ANP32CO43423 234 aa16.94■□□□□ 0.3
SHMT2-221ENST00000555773 USP19O94966 1318 aa16.93■□□□□ 0.3
SHMT2-221ENST00000555773 GCP02774 474 aa16.92■□□□□ 0.3
SHMT2-221ENST00000555773 PRKRIP1Q9H875 184 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-221ENST00000555773 JCADQ9P266 1359 aa16.91■□□□□ 0.3
SHMT2-221ENST00000555773 OVOS2A0A0J9YW53 1432 aa16.91■□□□□ 0.3
SHMT2-221ENST00000555773 OVOS2Q6IE36 1432 aa16.91■□□□□ 0.3
SHMT2-221ENST00000555773 CNGB1Q14028 1251 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-221ENST00000555773 ILDR1Q86SU0 546 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-221ENST00000555773 PNPLA6Q8IY17 1366 aa16.9■□□□□ 0.3
SHMT2-221ENST00000555773 TRPM3Q9HCF6 1732 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-221ENST00000555773 NRKQ7Z2Y5 1582 aa16.9■□□□□ 0.3
SHMT2-221ENST00000555773 AATKQ6ZMQ8 1374 aa16.89■□□□□ 0.29
SHMT2-221ENST00000555773 PARD3Q8TEW0 1356 aa16.89■□□□□ 0.29
SHMT2-221ENST00000555773 PHLPP1O60346 1717 aa16.88■□□□□ 0.29
SHMT2-221ENST00000555773 HAP1P54257 671 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-221ENST00000555773 CABLES1Q8TDN4 633 aa16.88■□□□□ 0.29
SHMT2-221ENST00000555773 COL16A1Q07092 1604 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-221ENST00000555773 TNNT2P45379 298 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-221ENST00000555773 SPATA31A6Q5VVP1 1343 aa16.87■□□□□ 0.29
SHMT2-221ENST00000555773 ALS2Q96Q42 1657 aa16.86■□□□□ 0.29
SHMT2-221ENST00000555773 PIK3C2AO00443 1686 aa16.85■□□□□ 0.29
SHMT2-221ENST00000555773 PLEKHG5O94827 1062 aa16.85■□□□□ 0.29
SHMT2-221ENST00000555773 PPP2R1AP30153 589 aa16.85■□□□□ 0.29
SHMT2-221ENST00000555773 ARHGEF25Q86VW2 580 aa16.85■□□□□ 0.29
SHMT2-221ENST00000555773 POLKQ9UBT6 870 aa16.85■□□□□ 0.29
SHMT2-221ENST00000555773 SOX12O15370 315 aa16.84■□□□□ 0.29
SHMT2-221ENST00000555773 MYBBP1AQ9BQG0 1328 aaKnown RBP16.84■□□□□ 0.29
SHMT2-221ENST00000555773 FBLN1P23142 703 aa16.83■□□□□ 0.28
SHMT2-221ENST00000555773 ZC3H6P61129 1189 aaKnown RBP16.83■□□□□ 0.28
SHMT2-221ENST00000555773 MED1Q15648 1581 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-221ENST00000555773 SLIT3O75094 1523 aa16.82■□□□□ 0.28
SHMT2-221ENST00000555773 CPDO75976 1380 aa16.82■□□□□ 0.28
SHMT2-221ENST00000555773 KIF24Q5T7B8 1368 aa16.82■□□□□ 0.28
SHMT2-221ENST00000555773 MAP3K19Q56UN5 1328 aa16.82■□□□□ 0.28
SHMT2-221ENST00000555773 MTHFSP49914 203 aa16.82■□□□□ 0.28
SHMT2-221ENST00000555773 RRS1Q15050 365 aaKnown RBP16.82■□□□□ 0.28
SHMT2-221ENST00000555773 NUTM2BA6NNL0 878 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-221ENST00000555773 NUTM2EB1AL46 878 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-221ENST00000555773 AMPHP49418 695 aa16.81■□□□□ 0.28
SHMT2-221ENST00000555773 NUTM2AQ8IVF1 878 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-221ENST00000555773 USP54Q70EL1 1684 aa16.81■□□□□ 0.28
SHMT2-221ENST00000555773 IP6K1Q92551 441 aa16.8■□□□□ 0.28
SHMT2-221ENST00000555773 PRDM11Q9NQV5 511 aa16.8■□□□□ 0.28
SHMT2-221ENST00000555773 KIF20BQ96Q89 1820 aa16.8■□□□□ 0.28
SHMT2-221ENST00000555773 COL22A1Q8NFW1 1626 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-221ENST00000555773 PPM1GO15355 546 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-221ENST00000555773 CFAP53Q96M91 514 aa16.79■□□□□ 0.28
SHMT2-221ENST00000555773 EMILIN1Q9Y6C2 1016 aa16.79■□□□□ 0.28
SHMT2-221ENST00000555773 KIAA0232Q92628 1395 aa16.78■□□□□ 0.28
SHMT2-221ENST00000555773 FAM83GA6ND36 823 aa16.78■□□□□ 0.28
SHMT2-221ENST00000555773 INSRP06213 1382 aa16.77■□□□□ 0.28
SHMT2-221ENST00000555773 NFAT5O94916 1531 aa16.77■□□□□ 0.28
SHMT2-221ENST00000555773 ADAMTS2O95450 1211 aa16.77■□□□□ 0.28
SHMT2-221ENST00000555773 HOXC9P31274 260 aa16.77■□□□□ 0.28
SHMT2-221ENST00000555773 MIER1Q8N108 512 aa16.77■□□□□ 0.28
SHMT2-221ENST00000555773 RTL1A6NKG5 1358 aa16.77■□□□□ 0.27
SHMT2-221ENST00000555773 FLT4P35916 1363 aa16.77■□□□□ 0.27
SHMT2-221ENST00000555773 ZBTB7CA1YPR0 619 aa16.76■□□□□ 0.27
SHMT2-221ENST00000555773 CCER2I3L3R5 266 aa16.76■□□□□ 0.27
SHMT2-221ENST00000555773 ANKRD26Q9UPS8 1709 aa16.76■□□□□ 0.27
SHMT2-221ENST00000555773 SHPRHQ149N8 1683 aa16.75■□□□□ 0.27
SHMT2-221ENST00000555773 CHRNA2Q15822 529 aa16.75■□□□□ 0.27
SHMT2-221ENST00000555773 HSP90AB2PQ58FF8 381 aa16.75■□□□□ 0.27
SHMT2-221ENST00000555773 SMG6Q86US8 1419 aaKnown RBP16.75■□□□□ 0.27
SHMT2-221ENST00000555773 AXIN2Q9Y2T1 843 aa16.74■□□□□ 0.27
SHMT2-221ENST00000555773 MARF1Q9Y4F3 1742 aaKnown RBP16.73■□□□□ 0.27
SHMT2-221ENST00000555773 MEX3CQ5U5Q3 659 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms