RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 GJD4Q96KN9 370 aaPredicted RBP16.93■□□□□ 0.3
VRK1-204ENST00000555351 PLCH1Q4KWH8 1693 aa16.93■□□□□ 0.3
VRK1-204ENST00000555351 ACEP12821 1306 aa16.93■□□□□ 0.3
VRK1-204ENST00000555351 TONSLQ96HA7 1378 aa16.92■□□□□ 0.3
VRK1-204ENST00000555351 SRPK2P78362 688 aaKnown RBP16.92■□□□□ 0.3
VRK1-204ENST00000555351 NBPF8Q3BBV2 869 aa16.92■□□□□ 0.3
VRK1-204ENST00000555351 EVC2Q86UK5 1308 aa16.92■□□□□ 0.3
VRK1-204ENST00000555351 COL14A1Q05707 1796 aaKnown RBP16.92■□□□□ 0.3
VRK1-204ENST00000555351 SBNO2Q9Y2G9 1366 aa16.91■□□□□ 0.3
VRK1-204ENST00000555351 PPIP5K1Q6PFW1 1433 aa16.91■□□□□ 0.3
VRK1-204ENST00000555351 RALGAPBQ86X10 1494 aa16.91■□□□□ 0.3
VRK1-204ENST00000555351 PAK3O75914 559 aaPredicted RBP16.9■□□□□ 0.3
VRK1-204ENST00000555351 VPS72Q15906 364 aa16.9■□□□□ 0.3
VRK1-204ENST00000555351 ATAD2Q6PL18 1390 aa16.89■□□□□ 0.3
VRK1-204ENST00000555351 GLI3P10071 1580 aa16.89■□□□□ 0.29
VRK1-204ENST00000555351 FAM83GA6ND36 823 aa16.88■□□□□ 0.29
VRK1-204ENST00000555351 PHRF1Q9P1Y6 1649 aaKnown RBP16.88■□□□□ 0.29
VRK1-204ENST00000555351 NRAPQ86VF7 1730 aa16.87■□□□□ 0.29
VRK1-204ENST00000555351 CABP2Q9NPB3 220 aa16.87■□□□□ 0.29
VRK1-204ENST00000555351 ONECUT3O60422 494 aaPredicted RBP16.86■□□□□ 0.29
VRK1-204ENST00000555351 CARD11Q9BXL7 1154 aa16.85■□□□□ 0.29
VRK1-204ENST00000555351 ZNF692Q9BU19 519 aaPredicted RBP16.84■□□□□ 0.29
VRK1-204ENST00000555351 USP19O94966 1318 aa16.84■□□□□ 0.29
VRK1-204ENST00000555351 USP6P35125 1406 aa16.84■□□□□ 0.29
VRK1-204ENST00000555351 CCDC125Q86Z20 511 aa16.83■□□□□ 0.28
VRK1-204ENST00000555351 ABTB2Q8N961 1025 aa16.83■□□□□ 0.28
VRK1-204ENST00000555351 CLSPNQ9HAW4 1339 aa16.83■□□□□ 0.28
VRK1-204ENST00000555351 BTG4Q9NY30 223 aa16.83■□□□□ 0.28
VRK1-204ENST00000555351 CABP1Q9NZU7 370 aa16.83■□□□□ 0.28
VRK1-204ENST00000555351 SSH2Q76I76 1423 aa16.82■□□□□ 0.28
VRK1-204ENST00000555351 CPDO75976 1380 aa16.82■□□□□ 0.28
VRK1-204ENST00000555351 SLC24A1O60721 1099 aa16.82■□□□□ 0.28
VRK1-204ENST00000555351 NLRP13Q86W25 1043 aa16.82■□□□□ 0.28
VRK1-204ENST00000555351 PRDM11Q9NQV5 511 aa16.82■□□□□ 0.28
VRK1-204ENST00000555351 NRKQ7Z2Y5 1582 aa16.81■□□□□ 0.28
VRK1-204ENST00000555351 PLEKHG5O94827 1062 aa16.81■□□□□ 0.28
VRK1-204ENST00000555351 PUS7Q96PZ0 661 aaKnown RBP16.81■□□□□ 0.28
VRK1-204ENST00000555351 KIAA0232Q92628 1395 aa16.8■□□□□ 0.28
VRK1-204ENST00000555351 AKAP12Q02952 1782 aa16.8■□□□□ 0.28
VRK1-204ENST00000555351 TIMELESSQ9UNS1 1208 aa16.8■□□□□ 0.28
VRK1-204ENST00000555351 CPSF1Q10570 1443 aaKnown RBP16.79■□□□□ 0.28
VRK1-204ENST00000555351 CCDC9Q9Y3X0 531 aaKnown RBP16.79■□□□□ 0.28
VRK1-204ENST00000555351 SPATA31A5Q5VU36 1347 aa16.78■□□□□ 0.28
VRK1-204ENST00000555351 SPATA31A7Q8IWB4 1347 aa16.78■□□□□ 0.28
VRK1-204ENST00000555351 SEPT12Q8IYM1 358 aa16.78■□□□□ 0.28
VRK1-204ENST00000555351 SLIT3O75094 1523 aa16.78■□□□□ 0.28
VRK1-204ENST00000555351 BRWD3Q6RI45 1802 aa16.77■□□□□ 0.28
VRK1-204ENST00000555351 TTC21AQ8NDW8 1320 aa16.77■□□□□ 0.28
VRK1-204ENST00000555351 GCP02774 474 aa16.77■□□□□ 0.28
VRK1-204ENST00000555351 LMO7Q8WWI1 1683 aa16.77■□□□□ 0.28
VRK1-204ENST00000555351 PIK3C2AO00443 1686 aa16.76■□□□□ 0.27
VRK1-204ENST00000555351 NUTM2GQ5VZR2 741 aa16.76■□□□□ 0.27
VRK1-204ENST00000555351 ZC3H6P61129 1189 aaKnown RBP16.75■□□□□ 0.27
VRK1-204ENST00000555351 MON2Q7Z3U7 1717 aa16.75■□□□□ 0.27
VRK1-204ENST00000555351 TTC21BQ7Z4L5 1316 aa16.74■□□□□ 0.27
VRK1-204ENST00000555351 NLRP6P59044 892 aa16.74■□□□□ 0.27
VRK1-204ENST00000555351 THSD7AQ9UPZ6 1657 aa16.74■□□□□ 0.27
VRK1-204ENST00000555351 SPATA31A1Q5TZJ5 1347 aa16.73■□□□□ 0.27
VRK1-204ENST00000555351 BLMP54132 1417 aaPredicted RBP16.73■□□□□ 0.27
VRK1-204ENST00000555351 CAMTA1Q9Y6Y1 1673 aa16.73■□□□□ 0.27
VRK1-204ENST00000555351 CHRNA2Q15822 529 aa16.73■□□□□ 0.27
VRK1-204ENST00000555351 KRT27Q7Z3Y8 459 aa16.73■□□□□ 0.27
VRK1-204ENST00000555351 KTN1Q86UP2 1357 aaKnown RBP16.73■□□□□ 0.27
VRK1-204ENST00000555351 NINLQ9Y2I6 1382 aa16.73■□□□□ 0.27
VRK1-204ENST00000555351 FAM98CQ17RN3 349 aaKnown RBP16.72■□□□□ 0.27
VRK1-204ENST00000555351 AATKQ6ZMQ8 1374 aa16.72■□□□□ 0.27
VRK1-204ENST00000555351 USP54Q70EL1 1684 aa16.72■□□□□ 0.27
VRK1-204ENST00000555351 KCNH5Q8NCM2 988 aa16.71■□□□□ 0.27
VRK1-204ENST00000555351 TESK2Q96S53 571 aa16.71■□□□□ 0.27
VRK1-204ENST00000555351 CD163L1Q9NR16 1453 aa16.7■□□□□ 0.26
VRK1-204ENST00000555351 EVA1CP58658 441 aa16.7■□□□□ 0.26
VRK1-204ENST00000555351 BARGINQ6ZT62 677 aa16.7■□□□□ 0.26
VRK1-204ENST00000555351 ABCC6O95255 1503 aa16.7■□□□□ 0.26
VRK1-204ENST00000555351 EP400Q96L91 3159 aa16.69■□□□□ 0.26
VRK1-204ENST00000555351 COL5A2P05997 1499 aaPredicted RBP16.69■□□□□ 0.26
VRK1-204ENST00000555351 USP31Q70CQ4 1352 aa16.69■□□□□ 0.26
VRK1-204ENST00000555351 ST20-MTHFSA0A0A6YYL1 179 aa16.69■□□□□ 0.26
VRK1-204ENST00000555351 HDGFL2Q7Z4V5 671 aaPredicted RBP16.69■□□□□ 0.26
VRK1-204ENST00000555351 TERF2IPQ9NYB0 399 aa16.69■□□□□ 0.26
VRK1-204ENST00000555351 THRAP3Q9Y2W1 955 aaKnown RBP16.69■□□□□ 0.26
VRK1-204ENST00000555351 STRN4Q9NRL3 753 aa16.68■□□□□ 0.26
VRK1-204ENST00000555351 EDC4Q6P2E9 1401 aaKnown RBP16.68■□□□□ 0.26
VRK1-204ENST00000555351 COL18A1P39060 1754 aa16.67■□□□□ 0.26
VRK1-204ENST00000555351 A0A0G2JS52 829 aa16.67■□□□□ 0.26
VRK1-204ENST00000555351 MYT1Q01538 1121 aa16.67■□□□□ 0.26
VRK1-204ENST00000555351 CRB1P82279 1406 aa16.66■□□□□ 0.26
VRK1-204ENST00000555351 ARHGEF25Q86VW2 580 aa16.66■□□□□ 0.26
VRK1-204ENST00000555351 NFAT5O94916 1531 aa16.65■□□□□ 0.26
VRK1-204ENST00000555351 USP47Q96K76 1375 aa16.65■□□□□ 0.26
VRK1-204ENST00000555351 SF3B2Q13435 895 aaKnown RBP16.65■□□□□ 0.26
VRK1-204ENST00000555351 LARP1Q6PKG0 1096 aaKnown RBP16.65■□□□□ 0.26
VRK1-204ENST00000555351 TCP11L2Q8N4U5 519 aa16.65■□□□□ 0.26
VRK1-204ENST00000555351 TMC1Q8TDI8 760 aa16.65■□□□□ 0.26
VRK1-204ENST00000555351 SLC12A5Q9H2X9 1139 aa16.65■□□□□ 0.26
VRK1-204ENST00000555351 A0A1W2PP64 1363 aa16.64■□□□□ 0.25
VRK1-204ENST00000555351 RGPD1P0DJD0 1748 aa16.63■□□□□ 0.25
VRK1-204ENST00000555351 TMF1P82094 1093 aa16.63■□□□□ 0.25
VRK1-204ENST00000555351 PCGF6Q9BYE7 350 aa16.63■□□□□ 0.25
VRK1-204ENST00000555351 PARP4Q9UKK3 1724 aaKnown RBP16.62■□□□□ 0.25
VRK1-204ENST00000555351 C11orf95C9JLR9 678 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms