RNA–Protein interactions for RNA: ENST00000555252.5

MTHFD1-210, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 1 (best)

Gene MTHFD1, Length 2,053 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-210ENST00000555252 IGHDP01880 384 aa13.57□□□□□ -0.24
MTHFD1-210ENST00000555252 RRAGDQ9NQL2 400 aaPredicted RBP13.57□□□□□ -0.24
MTHFD1-210ENST00000555252 GOLGA6L3A6NEY3 463 aa13.57□□□□□ -0.24
MTHFD1-210ENST00000555252 SRPK2P78362 688 aaKnown RBP13.57□□□□□ -0.24
MTHFD1-210ENST00000555252 MYH16Q9H6N6 1097 aa13.57□□□□□ -0.24
MTHFD1-210ENST00000555252 DMRT2Q9Y5R5 561 aa13.57□□□□□ -0.24
MTHFD1-210ENST00000555252 CANXP27824 592 aaKnown RBP13.56□□□□□ -0.24
MTHFD1-210ENST00000555252 A0A1W2PP64 1363 aa13.56□□□□□ -0.24
MTHFD1-210ENST00000555252 CT47B1P0C2W7 299 aaPredicted RBP13.55□□□□□ -0.24
MTHFD1-210ENST00000555252 ADGRB2O60241 1585 aa13.55□□□□□ -0.24
MTHFD1-210ENST00000555252 MYO5BQ9ULV0 1848 aa13.55□□□□□ -0.24
MTHFD1-210ENST00000555252 ANKRD26Q9UPS8 1709 aa13.55□□□□□ -0.24
MTHFD1-210ENST00000555252 ALKQ9UM73 1620 aa13.55□□□□□ -0.24
MTHFD1-210ENST00000555252 RARSP54136 660 aaKnown RBP13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 STK26Q9P289 416 aa13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 DLC1Q96QB1 1528 aa13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 U2AF1L5P0DN76 240 aaPredicted RBP13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 U2AF1Q01081 240 aaKnown RBP eCLIP13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 HDGFL2Q7Z4V5 671 aaPredicted RBP13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 PNNQ9H307 717 aaKnown RBP13.54□□□□□ -0.24
MTHFD1-210ENST00000555252 MRE11P49959 708 aa13.53□□□□□ -0.24
MTHFD1-210ENST00000555252 PRAM1Q96QH2 718 aa13.53□□□□□ -0.24
MTHFD1-210ENST00000555252 RRP9O43818 475 aaKnown RBP13.52□□□□□ -0.24
MTHFD1-210ENST00000555252 MCM4P33991 863 aa13.52□□□□□ -0.24
MTHFD1-210ENST00000555252 TBC1D2Q9BYX2 928 aa13.52□□□□□ -0.24
MTHFD1-210ENST00000555252 STAG3Q9UJ98 1225 aa13.52□□□□□ -0.24
MTHFD1-210ENST00000555252 SEC24BO95487 1268 aa13.52□□□□□ -0.25
MTHFD1-210ENST00000555252 XRCC6P12956 609 aaKnown RBP eCLIP13.52□□□□□ -0.25
MTHFD1-210ENST00000555252 NEUROD2Q15784 382 aa13.52□□□□□ -0.25
MTHFD1-210ENST00000555252 SLKQ9H2G2 1235 aaPredicted RBP13.52□□□□□ -0.25
MTHFD1-210ENST00000555252 CHMP5Q9NZZ3 219 aa13.52□□□□□ -0.25
MTHFD1-210ENST00000555252 RRP7AQ9Y3A4 280 aaKnown RBP13.52□□□□□ -0.25
MTHFD1-210ENST00000555252 SAFB2Q14151 953 aaKnown RBP eCLIP13.51□□□□□ -0.25
MTHFD1-210ENST00000555252 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
MTHFD1-210ENST00000555252 COL3A1P02461 1466 aaPredicted RBP13.51□□□□□ -0.25
MTHFD1-210ENST00000555252 CD163L1Q9NR16 1453 aa13.51□□□□□ -0.25
MTHFD1-210ENST00000555252 ARHGEF40Q8TER5 1519 aa13.51□□□□□ -0.25
MTHFD1-210ENST00000555252 MINK1Q8N4C8 1332 aaPredicted RBP13.5□□□□□ -0.25
MTHFD1-210ENST00000555252 DDX11L8A8MPP1 907 aa13.5□□□□□ -0.25
MTHFD1-210ENST00000555252 FBXO31Q5XUX0 539 aaPredicted RBP13.5□□□□□ -0.25
MTHFD1-210ENST00000555252 IL16Q14005 1332 aa13.5□□□□□ -0.25
MTHFD1-210ENST00000555252 FYB1O15117 783 aa13.49□□□□□ -0.25
MTHFD1-210ENST00000555252 PTMSP20962 102 aa13.49□□□□□ -0.25
MTHFD1-210ENST00000555252 RWDD1Q9H446 243 aaPredicted RBP13.49□□□□□ -0.25
MTHFD1-210ENST00000555252 CDK19Q9BWU1 502 aa13.49□□□□□ -0.25
MTHFD1-210ENST00000555252 COG6Q9Y2V7 657 aa13.49□□□□□ -0.25
MTHFD1-210ENST00000555252 A2ML1A8K2U0 1454 aa13.49□□□□□ -0.25
MTHFD1-210ENST00000555252 PANK1Q8TE04 598 aa13.48□□□□□ -0.25
MTHFD1-210ENST00000555252 PLEKHF1Q96S99 279 aa13.48□□□□□ -0.25
MTHFD1-210ENST00000555252 GGNBP2Q9H3C7 697 aa13.48□□□□□ -0.25
MTHFD1-210ENST00000555252 PNPLA6Q8IY17 1366 aa13.48□□□□□ -0.25
MTHFD1-210ENST00000555252 ATP7BP35670 1465 aa13.48□□□□□ -0.25
MTHFD1-210ENST00000555252 NCOA3Q9Y6Q9 1424 aa13.48□□□□□ -0.25
MTHFD1-210ENST00000555252 RIMS2Q9UQ26 1411 aa13.47□□□□□ -0.25
MTHFD1-210ENST00000555252 HSP90AA1P07900 732 aaKnown RBP13.47□□□□□ -0.25
MTHFD1-210ENST00000555252 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.47□□□□□ -0.25
MTHFD1-210ENST00000555252 KIF20BQ96Q89 1820 aa13.47□□□□□ -0.25
MTHFD1-210ENST00000555252 U2SURPO15042 1029 aaKnown RBP13.46□□□□□ -0.25
MTHFD1-210ENST00000555252 DIAPH1O60610 1272 aaKnown RBP13.46□□□□□ -0.25
MTHFD1-210ENST00000555252 TMPOP42166 694 aaKnown RBP13.46□□□□□ -0.25
MTHFD1-210ENST00000555252 PDZRN3Q9UPQ7 1066 aa13.46□□□□□ -0.25
MTHFD1-210ENST00000555252 TRAK2O60296 914 aa13.46□□□□□ -0.26
MTHFD1-210ENST00000555252 CDC42BPGQ6DT37 1551 aa13.46□□□□□ -0.26
MTHFD1-210ENST00000555252 ZKSCAN2Q63HK3 967 aa13.45□□□□□ -0.26
MTHFD1-210ENST00000555252 NAP1L5Q96NT1 182 aaPredicted RBP13.45□□□□□ -0.26
MTHFD1-210ENST00000555252 HSP90AA2PQ14568 343 aaPredicted RBP13.44□□□□□ -0.26
MTHFD1-210ENST00000555252 CIZ1Q9ULV3 898 aaPredicted RBP13.44□□□□□ -0.26
MTHFD1-210ENST00000555252 SETD1AO15047 1707 aaKnown RBP13.44□□□□□ -0.26
MTHFD1-210ENST00000555252 HDGFP51858 240 aaKnown RBP13.44□□□□□ -0.26
MTHFD1-210ENST00000555252 SIRT1Q96EB6 747 aa13.44□□□□□ -0.26
MTHFD1-210ENST00000555252 CABP1Q9NZU7 370 aa13.44□□□□□ -0.26
MTHFD1-210ENST00000555252 FCHSD2O94868 740 aa13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 PKNOX2Q96KN3 472 aa13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 GRPEL1Q9HAV7 217 aa13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 MVPQ14764 893 aaKnown RBP13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 C22orf23Q9BZE7 217 aa13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 TRIM35Q9UPQ4 493 aa13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 PCDHB15Q9Y5E8 787 aa13.43□□□□□ -0.26
MTHFD1-210ENST00000555252 TPM2P07951 284 aa13.42□□□□□ -0.26
MTHFD1-210ENST00000555252 SKOR2Q2VWA4 1001 aaPredicted RBP13.42□□□□□ -0.26
MTHFD1-210ENST00000555252 SNX21Q969T3 373 aa13.42□□□□□ -0.26
MTHFD1-210ENST00000555252 HSCBQ8IWL3 235 aa13.41□□□□□ -0.26
MTHFD1-210ENST00000555252 DZIP1LQ8IYY4 767 aaKnown RBP13.41□□□□□ -0.26
MTHFD1-210ENST00000555252 ESPNB1AK53 854 aa13.41□□□□□ -0.26
MTHFD1-210ENST00000555252 FTSJ3Q8IY81 847 aaKnown RBP13.41□□□□□ -0.26
MTHFD1-210ENST00000555252 FAM135BQ49AJ0 1406 aa13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 EDC4Q6P2E9 1401 aaKnown RBP13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 RLBP1P12271 317 aa13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 DDIT3P35638 169 aa13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 RIPK4P57078 832 aa13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 HDAC1Q13547 482 aaPredicted RBP13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 ZNF428Q96B54 188 aa13.4□□□□□ -0.26
MTHFD1-210ENST00000555252 EXOSC9Q06265 439 aaKnown RBP13.4□□□□□ -0.27
MTHFD1-210ENST00000555252 ZNF692Q9BU19 519 aaPredicted RBP13.4□□□□□ -0.27
MTHFD1-210ENST00000555252 SMC4Q9NTJ3 1288 aa13.4□□□□□ -0.27
MTHFD1-210ENST00000555252 KNDC1Q76NI1 1749 aa13.39□□□□□ -0.27
MTHFD1-210ENST00000555252 CPSF1Q10570 1443 aaKnown RBP13.39□□□□□ -0.27
MTHFD1-210ENST00000555252 WASLO00401 505 aaPredicted RBP13.39□□□□□ -0.27
MTHFD1-210ENST00000555252 CALD1Q05682 793 aaKnown RBP13.39□□□□□ -0.27
MTHFD1-210ENST00000555252 PANK2Q9BZ23 570 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms