RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 ONECUT3O60422 494 aaPredicted RBP9.57□□□□□ -0.88
SLIRP-203ENST00000554074 LMOD2Q6P5Q4 547 aa9.57□□□□□ -0.88
SLIRP-203ENST00000554074 NGDNQ8NEJ9 315 aaKnown RBP9.57□□□□□ -0.88
SLIRP-203ENST00000554074 CABLES1Q8TDN4 633 aa9.57□□□□□ -0.88
SLIRP-203ENST00000554074 NUDT16Q96DE0 195 aaKnown RBP9.57□□□□□ -0.88
SLIRP-203ENST00000554074 FAM83GA6ND36 823 aa9.56□□□□□ -0.88
SLIRP-203ENST00000554074 CDK19Q9BWU1 502 aa9.56□□□□□ -0.88
SLIRP-203ENST00000554074 CCDC61Q9Y6R9 512 aa9.56□□□□□ -0.88
SLIRP-203ENST00000554074 PLEKHG3A1L390 1219 aa9.55□□□□□ -0.88
SLIRP-203ENST00000554074 NBPF1Q3BBV0 1214 aa9.55□□□□□ -0.88
SLIRP-203ENST00000554074 BRD4O60885 1362 aaPredicted RBP9.54□□□□□ -0.88
SLIRP-203ENST00000554074 AKAP12Q02952 1782 aa9.54□□□□□ -0.88
SLIRP-203ENST00000554074 THSD7AQ9UPZ6 1657 aa9.54□□□□□ -0.88
SLIRP-203ENST00000554074 NRKQ7Z2Y5 1582 aa9.54□□□□□ -0.88
SLIRP-203ENST00000554074 CENPJQ9HC77 1338 aaPredicted RBP9.54□□□□□ -0.88
SLIRP-203ENST00000554074 L3MBTL2Q969R5 705 aa9.53□□□□□ -0.88
SLIRP-203ENST00000554074 BLMP54132 1417 aaPredicted RBP9.53□□□□□ -0.88
SLIRP-203ENST00000554074 RGPD1P0DJD0 1748 aa9.53□□□□□ -0.88
SLIRP-203ENST00000554074 ACEP12821 1306 aa9.53□□□□□ -0.88
SLIRP-203ENST00000554074 LMO7Q8WWI1 1683 aa9.52□□□□□ -0.89
SLIRP-203ENST00000554074 PAK3O75914 559 aaPredicted RBP9.52□□□□□ -0.89
SLIRP-203ENST00000554074 NBPF8Q3BBV2 869 aa9.52□□□□□ -0.89
SLIRP-203ENST00000554074 SRCAPQ6ZRS2 3230 aa9.52□□□□□ -0.89
SLIRP-203ENST00000554074 SEPT12Q8IYM1 358 aa9.52□□□□□ -0.89
SLIRP-203ENST00000554074 BTG4Q9NY30 223 aa9.52□□□□□ -0.89
SLIRP-203ENST00000554074 PPIP5K1Q6PFW1 1433 aa9.51□□□□□ -0.89
SLIRP-203ENST00000554074 PLEKHG5O94827 1062 aa9.51□□□□□ -0.89
SLIRP-203ENST00000554074 PRDM11Q9NQV5 511 aa9.51□□□□□ -0.89
SLIRP-203ENST00000554074 CCDC9Q9Y3X0 531 aaKnown RBP9.51□□□□□ -0.89
SLIRP-203ENST00000554074 USP19O94966 1318 aa9.51□□□□□ -0.89
SLIRP-203ENST00000554074 SPATA31A5Q5VU36 1347 aa9.51□□□□□ -0.89
SLIRP-203ENST00000554074 SPATA31A7Q8IWB4 1347 aa9.51□□□□□ -0.89
SLIRP-203ENST00000554074 CPDO75976 1380 aa9.5□□□□□ -0.89
SLIRP-203ENST00000554074 KIAA0232Q92628 1395 aa9.5□□□□□ -0.89
SLIRP-203ENST00000554074 KRT27Q7Z3Y8 459 aa9.5□□□□□ -0.89
SLIRP-203ENST00000554074 MON2Q7Z3U7 1717 aa9.49□□□□□ -0.89
SLIRP-203ENST00000554074 TNS1Q9HBL0 1735 aaKnown RBP9.49□□□□□ -0.89
SLIRP-203ENST00000554074 SRPK2P78362 688 aaKnown RBP9.49□□□□□ -0.89
SLIRP-203ENST00000554074 SIN3AQ96ST3 1273 aa9.49□□□□□ -0.89
SLIRP-203ENST00000554074 ROCK2O75116 1388 aaKnown RBP9.49□□□□□ -0.89
SLIRP-203ENST00000554074 PIK3C2AO00443 1686 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 USP6P35125 1406 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 SLIT3O75094 1523 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 NLRP13Q86W25 1043 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 ABTB2Q8N961 1025 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 ZRANB1Q9UGI0 708 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 SPATA31A1Q5TZJ5 1347 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 EVC2Q86UK5 1308 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 CAMTA1Q9Y6Y1 1673 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 SBNO2Q9Y2G9 1366 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 PARP4Q9UKK3 1724 aaKnown RBP9.48□□□□□ -0.89
SLIRP-203ENST00000554074 SSH2Q76I76 1423 aa9.48□□□□□ -0.89
SLIRP-203ENST00000554074 COL18A1P39060 1754 aa9.47□□□□□ -0.89
SLIRP-203ENST00000554074 WNK3Q9BYP7 1800 aa9.47□□□□□ -0.89
SLIRP-203ENST00000554074 SF3B2Q13435 895 aaKnown RBP9.47□□□□□ -0.89
SLIRP-203ENST00000554074 FAM98CQ17RN3 349 aaKnown RBP9.47□□□□□ -0.89
SLIRP-203ENST00000554074 CABP2Q9NPB3 220 aa9.47□□□□□ -0.89
SLIRP-203ENST00000554074 USP54Q70EL1 1684 aa9.47□□□□□ -0.89
SLIRP-203ENST00000554074 RGPD5Q99666 1765 aa9.47□□□□□ -0.89
SLIRP-203ENST00000554074 NEUROD1Q13562 356 aa9.46□□□□□ -0.9
SLIRP-203ENST00000554074 CABP1Q9NZU7 370 aa9.46□□□□□ -0.9
SLIRP-203ENST00000554074 DISP2A7MBM2 1401 aa9.46□□□□□ -0.9
SLIRP-203ENST00000554074 A0A0G2JS52 829 aa9.45□□□□□ -0.9
SLIRP-203ENST00000554074 ZC3H6P61129 1189 aaKnown RBP9.45□□□□□ -0.9
SLIRP-203ENST00000554074 MYT1Q01538 1121 aa9.45□□□□□ -0.9
SLIRP-203ENST00000554074 CHRNA2Q15822 529 aa9.45□□□□□ -0.9
SLIRP-203ENST00000554074 NUTM2GQ5VZR2 741 aa9.45□□□□□ -0.9
SLIRP-203ENST00000554074 BARGINQ6ZT62 677 aa9.45□□□□□ -0.9
SLIRP-203ENST00000554074 SBF2Q86WG5 1849 aa9.45□□□□□ -0.9
SLIRP-203ENST00000554074 GCP02774 474 aa9.44□□□□□ -0.9
SLIRP-203ENST00000554074 ZNF692Q9BU19 519 aaPredicted RBP9.44□□□□□ -0.9
SLIRP-203ENST00000554074 AATKQ6ZMQ8 1374 aa9.44□□□□□ -0.9
SLIRP-203ENST00000554074 CPSF1Q10570 1443 aaKnown RBP9.44□□□□□ -0.9
SLIRP-203ENST00000554074 COL5A2P05997 1499 aaPredicted RBP9.44□□□□□ -0.9
SLIRP-203ENST00000554074 ABCC6O95255 1503 aa9.44□□□□□ -0.9
SLIRP-203ENST00000554074 LRP5O75197 1615 aa9.44□□□□□ -0.9
SLIRP-203ENST00000554074 TTC21AQ8NDW8 1320 aa9.43□□□□□ -0.9
SLIRP-203ENST00000554074 BAG6P46379 1132 aa9.43□□□□□ -0.9
SLIRP-203ENST00000554074 EVA1CP58658 441 aa9.43□□□□□ -0.9
SLIRP-203ENST00000554074 DEFB132Q7Z7B7 95 aa9.43□□□□□ -0.9
SLIRP-203ENST00000554074 STRN4Q9NRL3 753 aa9.43□□□□□ -0.9
SLIRP-203ENST00000554074 THRAP3Q9Y2W1 955 aaKnown RBP9.43□□□□□ -0.9
SLIRP-203ENST00000554074 RGPD3A6NKT7 1758 aaPredicted RBP9.42□□□□□ -0.9
SLIRP-203ENST00000554074 LTN1O94822 1766 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 RGPD4Q7Z3J3 1758 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 RREB1Q92766 1687 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 CRB1P82279 1406 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 TONSLQ96HA7 1378 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 NLRP6P59044 892 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 FAM196AQ6ZSG2 479 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 TCP11L2Q8N4U5 519 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 PEAK1Q9H792 1746 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 LRRC37A3O60309 1634 aa9.42□□□□□ -0.9
SLIRP-203ENST00000554074 NFAT5O94916 1531 aa9.41□□□□□ -0.9
SLIRP-203ENST00000554074 TTC21BQ7Z4L5 1316 aa9.41□□□□□ -0.9
SLIRP-203ENST00000554074 LARP1Q6PKG0 1096 aaKnown RBP9.41□□□□□ -0.9
SLIRP-203ENST00000554074 KCNH5Q8NCM2 988 aa9.41□□□□□ -0.9
SLIRP-203ENST00000554074 PUS7Q96PZ0 661 aaKnown RBP9.41□□□□□ -0.9
SLIRP-203ENST00000554074 PARD3Q8TEW0 1356 aa9.4□□□□□ -0.9
SLIRP-203ENST00000554074 C11orf95C9JLR9 678 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms