RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TTC21BQ7Z4L5 1316 aa16.87■□□□□ 0.29
SHMT2-209ENST00000553949 EDC4Q6P2E9 1401 aaKnown RBP16.87■□□□□ 0.29
SHMT2-209ENST00000553949 PHLPP1O60346 1717 aa16.86■□□□□ 0.29
SHMT2-209ENST00000553949 SPATA31A3Q5VYP0 1347 aa16.86■□□□□ 0.29
SHMT2-209ENST00000553949 AKAP12Q02952 1782 aa16.86■□□□□ 0.29
SHMT2-209ENST00000553949 COL16A1Q07092 1604 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-209ENST00000553949 TNS3Q68CZ2 1445 aa16.85■□□□□ 0.29
SHMT2-209ENST00000553949 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHMT2-209ENST00000553949 TTC21AQ8NDW8 1320 aa16.84■□□□□ 0.29
SHMT2-209ENST00000553949 NSD3Q9BZ95 1437 aa16.84■□□□□ 0.29
SHMT2-209ENST00000553949 MON2Q7Z3U7 1717 aa16.84■□□□□ 0.29
SHMT2-209ENST00000553949 TRPM3Q9HCF6 1732 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-209ENST00000553949 DDX10Q13206 875 aaKnown RBP16.83■□□□□ 0.28
SHMT2-209ENST00000553949 LMOD2Q6P5Q4 547 aa16.83■□□□□ 0.28
SHMT2-209ENST00000553949 ABTB2Q8N961 1025 aa16.83■□□□□ 0.28
SHMT2-209ENST00000553949 NRKQ7Z2Y5 1582 aa16.82■□□□□ 0.28
SHMT2-209ENST00000553949 ARHGEF10O15013 1369 aa16.82■□□□□ 0.28
SHMT2-209ENST00000553949 PER1O15534 1290 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-209ENST00000553949 NME9Q86XW9 330 aa16.81■□□□□ 0.28
SHMT2-209ENST00000553949 KNSTRNQ9Y448 316 aa16.81■□□□□ 0.28
SHMT2-209ENST00000553949 PNPLA6Q8IY17 1366 aa16.8■□□□□ 0.28
SHMT2-209ENST00000553949 JCADQ9P266 1359 aa16.8■□□□□ 0.28
SHMT2-209ENST00000553949 CGNL1Q0VF96 1302 aa16.8■□□□□ 0.28
SHMT2-209ENST00000553949 NUTM2GQ5VZR2 741 aa16.8■□□□□ 0.28
SHMT2-209ENST00000553949 FYB1O15117 783 aa16.79■□□□□ 0.28
SHMT2-209ENST00000553949 NLRP6P59044 892 aa16.78■□□□□ 0.28
SHMT2-209ENST00000553949 ZRANB1Q9UGI0 708 aa16.78■□□□□ 0.28
SHMT2-209ENST00000553949 ALS2Q96Q42 1657 aa16.78■□□□□ 0.28
SHMT2-209ENST00000553949 USP31Q70CQ4 1352 aa16.77■□□□□ 0.28
SHMT2-209ENST00000553949 AMER1Q5JTC6 1135 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-209ENST00000553949 NLRP13Q86W25 1043 aa16.77■□□□□ 0.28
SHMT2-209ENST00000553949 GGNBP2Q9H3C7 697 aa16.77■□□□□ 0.28
SHMT2-209ENST00000553949 PIK3C2AO00443 1686 aa16.76■□□□□ 0.27
SHMT2-209ENST00000553949 PLEKHG5O94827 1062 aa16.76■□□□□ 0.27
SHMT2-209ENST00000553949 CABLES1Q8TDN4 633 aa16.75■□□□□ 0.27
SHMT2-209ENST00000553949 COG3Q96JB2 828 aa16.75■□□□□ 0.27
SHMT2-209ENST00000553949 USP19O94966 1318 aa16.74■□□□□ 0.27
SHMT2-209ENST00000553949 OVOS2A0A0J9YW53 1432 aa16.74■□□□□ 0.27
SHMT2-209ENST00000553949 OVOS2Q6IE36 1432 aa16.74■□□□□ 0.27
SHMT2-209ENST00000553949 NSD2O96028 1365 aa16.74■□□□□ 0.27
SHMT2-209ENST00000553949 COL22A1Q8NFW1 1626 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-209ENST00000553949 MED1Q15648 1581 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-209ENST00000553949 SHPRHQ149N8 1683 aa16.73■□□□□ 0.27
SHMT2-209ENST00000553949 SPATA31A6Q5VVP1 1343 aa16.72■□□□□ 0.27
SHMT2-209ENST00000553949 CC2D1BQ5T0F9 858 aaKnown RBP16.72■□□□□ 0.27
SHMT2-209ENST00000553949 NPC1L1Q9UHC9 1359 aa16.72■□□□□ 0.27
SHMT2-209ENST00000553949 NUTM2BA6NNL0 878 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-209ENST00000553949 NUTM2EB1AL46 878 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-209ENST00000553949 HAP1P54257 671 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-209ENST00000553949 NUTM2AQ8IVF1 878 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-209ENST00000553949 GCP02774 474 aa16.7■□□□□ 0.26
SHMT2-209ENST00000553949 KCNH5Q8NCM2 988 aa16.7■□□□□ 0.26
SHMT2-209ENST00000553949 SLIT3O75094 1523 aa16.7■□□□□ 0.26
SHMT2-209ENST00000553949 KIF20BQ96Q89 1820 aa16.69■□□□□ 0.26
SHMT2-209ENST00000553949 SOX12O15370 315 aa16.69■□□□□ 0.26
SHMT2-209ENST00000553949 CNGB1Q14028 1251 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-209ENST00000553949 MORC1Q86VD1 984 aa16.69■□□□□ 0.26
SHMT2-209ENST00000553949 USP54Q70EL1 1684 aa16.69■□□□□ 0.26
SHMT2-209ENST00000553949 MARF1Q9Y4F3 1742 aaKnown RBP16.68■□□□□ 0.26
SHMT2-209ENST00000553949 ADAMTS2O95450 1211 aa16.67■□□□□ 0.26
SHMT2-209ENST00000553949 CRYBG1Q9Y4K1 1723 aa16.67■□□□□ 0.26
SHMT2-209ENST00000553949 TNNT2P45379 298 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-209ENST00000553949 ZC3H6P61129 1189 aaKnown RBP16.66■□□□□ 0.26
SHMT2-209ENST00000553949 LRP6O75581 1613 aa16.66■□□□□ 0.26
SHMT2-209ENST00000553949 PHRF1Q9P1Y6 1649 aaKnown RBP16.66■□□□□ 0.26
SHMT2-209ENST00000553949 NFAT5O94916 1531 aa16.65■□□□□ 0.26
SHMT2-209ENST00000553949 FBLN1P23142 703 aa16.65■□□□□ 0.26
SHMT2-209ENST00000553949 ABCA3Q99758 1704 aa16.65■□□□□ 0.26
SHMT2-209ENST00000553949 CPDO75976 1380 aa16.64■□□□□ 0.26
SHMT2-209ENST00000553949 KIAA0232Q92628 1395 aa16.64■□□□□ 0.26
SHMT2-209ENST00000553949 ARHGEF25Q86VW2 580 aa16.64■□□□□ 0.25
SHMT2-209ENST00000553949 AATKQ6ZMQ8 1374 aa16.64■□□□□ 0.25
SHMT2-209ENST00000553949 ANKRD26Q9UPS8 1709 aa16.63■□□□□ 0.25
SHMT2-209ENST00000553949 PRDM11Q9NQV5 511 aa16.63■□□□□ 0.25
SHMT2-209ENST00000553949 ZBTB7CA1YPR0 619 aa16.62■□□□□ 0.25
SHMT2-209ENST00000553949 FAM83GA6ND36 823 aa16.62■□□□□ 0.25
SHMT2-209ENST00000553949 RRS1Q15050 365 aaKnown RBP16.62■□□□□ 0.25
SHMT2-209ENST00000553949 MEX3CQ5U5Q3 659 aaKnown RBP16.62■□□□□ 0.25
SHMT2-209ENST00000553949 PARD3Q8TEW0 1356 aa16.62■□□□□ 0.25
SHMT2-209ENST00000553949 MAP3K19Q56UN5 1328 aa16.61■□□□□ 0.25
SHMT2-209ENST00000553949 RALBP1Q15311 655 aa16.6■□□□□ 0.25
SHMT2-209ENST00000553949 CHRNA2Q15822 529 aa16.6■□□□□ 0.25
SHMT2-209ENST00000553949 C8orf37Q96NL8 207 aa16.6■□□□□ 0.25
SHMT2-209ENST00000553949 POLKQ9UBT6 870 aa16.6■□□□□ 0.25
SHMT2-209ENST00000553949 PRKRIP1Q9H875 184 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-209ENST00000553949 EMILIN1Q9Y6C2 1016 aa16.59■□□□□ 0.25
SHMT2-209ENST00000553949 AMPHP49418 695 aa16.58■□□□□ 0.24
SHMT2-209ENST00000553949 NGLY1Q96IV0 654 aa16.58■□□□□ 0.24
SHMT2-209ENST00000553949 PPM1GO15355 546 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-209ENST00000553949 ANP32CO43423 234 aa16.57■□□□□ 0.24
SHMT2-209ENST00000553949 PPP2R1AP30153 589 aa16.57■□□□□ 0.24
SHMT2-209ENST00000553949 IP6K1Q92551 441 aa16.57■□□□□ 0.24
SHMT2-209ENST00000553949 SMG6Q86US8 1419 aaKnown RBP16.56■□□□□ 0.24
SHMT2-209ENST00000553949 RTL1A6NKG5 1358 aa16.56■□□□□ 0.24
SHMT2-209ENST00000553949 KIF24Q5T7B8 1368 aa16.56■□□□□ 0.24
SHMT2-209ENST00000553949 HOXC9P31274 260 aa16.56■□□□□ 0.24
SHMT2-209ENST00000553949 MTHFSP49914 203 aa16.56■□□□□ 0.24
SHMT2-209ENST00000553949 DIEXFQ68CQ4 756 aaKnown RBP16.56■□□□□ 0.24
SHMT2-209ENST00000553949 FNBP4Q8N3X1 1017 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-209ENST00000553949 BTG4Q9NY30 223 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms