RNA–Protein interactions for RNA: ENST00000546898.1

DDX54-204, Transcript of DEAD-box helicase 54, humanhuman

TSL 3

Gene DDX54, Length 479 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-204ENST00000546898 HAP1P54257 671 aaPredicted RBP22.56■■□□□ 1.2
DDX54-204ENST00000546898 USP21Q9UK80 565 aa22.55■■□□□ 1.2
DDX54-204ENST00000546898 PHRF1Q9P1Y6 1649 aaKnown RBP22.55■■□□□ 1.2
DDX54-204ENST00000546898 AKAP12Q02952 1782 aa22.55■■□□□ 1.2
DDX54-204ENST00000546898 BRD4O60885 1362 aaPredicted RBP22.54■■□□□ 1.2
DDX54-204ENST00000546898 SLIT2O94813 1529 aa22.54■■□□□ 1.2
DDX54-204ENST00000546898 RXRBP28702 533 aa22.54■■□□□ 1.2
DDX54-204ENST00000546898 PAK3O75914 559 aaPredicted RBP22.53■■□□□ 1.2
DDX54-204ENST00000546898 ATAD2Q6PL18 1390 aa22.52■■□□□ 1.2
DDX54-204ENST00000546898 ATRNO75882 1429 aa22.52■■□□□ 1.2
DDX54-204ENST00000546898 CABLES1Q8TDN4 633 aa22.52■■□□□ 1.2
DDX54-204ENST00000546898 QTRT2Q9H974 415 aaKnown RBP22.52■■□□□ 1.2
DDX54-204ENST00000546898 BCL9LQ86UU0 1499 aa22.52■■□□□ 1.2
DDX54-204ENST00000546898 COL14A1Q05707 1796 aaKnown RBP22.51■■□□□ 1.19
DDX54-204ENST00000546898 RBM6P78332 1123 aaKnown RBP22.51■■□□□ 1.19
DDX54-204ENST00000546898 TRPC5Q9UL62 973 aaPredicted RBP22.51■■□□□ 1.19
DDX54-204ENST00000546898 USP6P35125 1406 aa22.49■■□□□ 1.19
DDX54-204ENST00000546898 CABP1Q9NZU7 370 aa22.48■■□□□ 1.19
DDX54-204ENST00000546898 NRAPQ86VF7 1730 aa22.48■■□□□ 1.19
DDX54-204ENST00000546898 CCER1Q8TC90 406 aaPredicted RBP22.47■■□□□ 1.19
DDX54-204ENST00000546898 MON2Q7Z3U7 1717 aa22.47■■□□□ 1.19
DDX54-204ENST00000546898 NRKQ7Z2Y5 1582 aa22.46■■□□□ 1.19
DDX54-204ENST00000546898 PLEKHG5O94827 1062 aa22.46■■□□□ 1.19
DDX54-204ENST00000546898 RGS12O14924 1447 aa22.46■■□□□ 1.19
DDX54-204ENST00000546898 SLC24A1O60721 1099 aa22.45■■□□□ 1.18
DDX54-204ENST00000546898 UNC5CLQ8IV45 518 aa22.45■■□□□ 1.18
DDX54-204ENST00000546898 PIK3C2AO00443 1686 aa22.43■■□□□ 1.18
DDX54-204ENST00000546898 SSH2Q76I76 1423 aa22.43■■□□□ 1.18
DDX54-204ENST00000546898 USP47Q96K76 1375 aa22.43■■□□□ 1.18
DDX54-204ENST00000546898 PUS7Q96PZ0 661 aaKnown RBP22.43■■□□□ 1.18
DDX54-204ENST00000546898 CPSF1Q10570 1443 aaKnown RBP22.42■■□□□ 1.18
DDX54-204ENST00000546898 ABTB2Q8N961 1025 aa22.42■■□□□ 1.18
DDX54-204ENST00000546898 ZNF692Q9BU19 519 aaPredicted RBP22.42■■□□□ 1.18
DDX54-204ENST00000546898 GLI3P10071 1580 aa22.42■■□□□ 1.18
DDX54-204ENST00000546898 USP19O94966 1318 aa22.41■■□□□ 1.18
DDX54-204ENST00000546898 ST20-MTHFSA0A0A6YYL1 179 aa22.41■■□□□ 1.18
DDX54-204ENST00000546898 TESK2Q96S53 571 aa22.41■■□□□ 1.18
DDX54-204ENST00000546898 FAM83GA6ND36 823 aa22.39■■□□□ 1.17
DDX54-204ENST00000546898 NLRP13Q86W25 1043 aa22.39■■□□□ 1.17
DDX54-204ENST00000546898 SLIT3O75094 1523 aa22.39■■□□□ 1.17
DDX54-204ENST00000546898 NUTM2GQ5VZR2 741 aa22.38■■□□□ 1.17
DDX54-204ENST00000546898 GJD4Q96KN9 370 aaPredicted RBP22.38■■□□□ 1.17
DDX54-204ENST00000546898 USP54Q70EL1 1684 aa22.37■■□□□ 1.17
DDX54-204ENST00000546898 CD163L1Q9NR16 1453 aa22.37■■□□□ 1.17
DDX54-204ENST00000546898 VPS72Q15906 364 aa22.37■■□□□ 1.17
DDX54-204ENST00000546898 PRDM11Q9NQV5 511 aa22.37■■□□□ 1.17
DDX54-204ENST00000546898 KTN1Q86UP2 1357 aaKnown RBP22.37■■□□□ 1.17
DDX54-204ENST00000546898 KIAA0232Q92628 1395 aa22.37■■□□□ 1.17
DDX54-204ENST00000546898 NINLQ9Y2I6 1382 aa22.37■■□□□ 1.17
DDX54-204ENST00000546898 TTC21AQ8NDW8 1320 aa22.36■■□□□ 1.17
DDX54-204ENST00000546898 CPDO75976 1380 aa22.36■■□□□ 1.17
DDX54-204ENST00000546898 BTG4Q9NY30 223 aa22.35■■□□□ 1.17
DDX54-204ENST00000546898 LMO7Q8WWI1 1683 aa22.35■■□□□ 1.17
DDX54-204ENST00000546898 TTC21BQ7Z4L5 1316 aa22.34■■□□□ 1.17
DDX54-204ENST00000546898 NLRP6P59044 892 aa22.32■■□□□ 1.16
DDX54-204ENST00000546898 HDGFL2Q7Z4V5 671 aaPredicted RBP22.32■■□□□ 1.16
DDX54-204ENST00000546898 TMC1Q8TDI8 760 aa22.32■■□□□ 1.16
DDX54-204ENST00000546898 GCP02774 474 aa22.31■■□□□ 1.16
DDX54-204ENST00000546898 ZC3H6P61129 1189 aaKnown RBP22.31■■□□□ 1.16
DDX54-204ENST00000546898 TMF1P82094 1093 aa22.31■■□□□ 1.16
DDX54-204ENST00000546898 BRWD3Q6RI45 1802 aa22.31■■□□□ 1.16
DDX54-204ENST00000546898 TERF2IPQ9NYB0 399 aa22.3■■□□□ 1.16
DDX54-204ENST00000546898 EDC4Q6P2E9 1401 aaKnown RBP22.3■■□□□ 1.16
DDX54-204ENST00000546898 A0A1W2PP64 1363 aa22.29■■□□□ 1.16
DDX54-204ENST00000546898 CCDC9Q9Y3X0 531 aaKnown RBP22.29■■□□□ 1.16
DDX54-204ENST00000546898 SLC12A5Q9H2X9 1139 aa22.28■■□□□ 1.16
DDX54-204ENST00000546898 CHRNA2Q15822 529 aa22.27■■□□□ 1.16
DDX54-204ENST00000546898 CDCA8Q53HL2 280 aa22.27■■□□□ 1.16
DDX54-204ENST00000546898 CAMTA1Q9Y6Y1 1673 aa22.26■■□□□ 1.15
DDX54-204ENST00000546898 USP31Q70CQ4 1352 aa22.26■■□□□ 1.15
DDX54-204ENST00000546898 COL18A1P39060 1754 aa22.26■■□□□ 1.15
DDX54-204ENST00000546898 MYOM1P52179 1685 aa22.26■■□□□ 1.15
DDX54-204ENST00000546898 KCNH5Q8NCM2 988 aa22.25■■□□□ 1.15
DDX54-204ENST00000546898 UPF1Q92900 1129 aaKnown RBP eCLIP22.25■■□□□ 1.15
DDX54-204ENST00000546898 NFAT5O94916 1531 aa22.25■■□□□ 1.15
DDX54-204ENST00000546898 SPATA31A5Q5VU36 1347 aa22.25■■□□□ 1.15
DDX54-204ENST00000546898 SPATA31A7Q8IWB4 1347 aa22.25■■□□□ 1.15
DDX54-204ENST00000546898 THSD7AQ9UPZ6 1657 aa22.24■■□□□ 1.15
DDX54-204ENST00000546898 ONECUT3O60422 494 aaPredicted RBP22.24■■□□□ 1.15
DDX54-204ENST00000546898 ABCC6O95255 1503 aa22.24■■□□□ 1.15
DDX54-204ENST00000546898 ANKRD36BQ8N2N9 1353 aa22.24■■□□□ 1.15
DDX54-204ENST00000546898 AATKQ6ZMQ8 1374 aa22.23■■□□□ 1.15
DDX54-204ENST00000546898 COL5A2P05997 1499 aaPredicted RBP22.22■■□□□ 1.15
DDX54-204ENST00000546898 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.22■■□□□ 1.15
DDX54-204ENST00000546898 LTN1O94822 1766 aa22.21■■□□□ 1.15
DDX54-204ENST00000546898 SEPT12Q8IYM1 358 aa22.21■■□□□ 1.15
DDX54-204ENST00000546898 RGPD5Q99666 1765 aa22.2■■□□□ 1.14
DDX54-204ENST00000546898 STRN4Q9NRL3 753 aa22.2■■□□□ 1.14
DDX54-204ENST00000546898 SPATA31A1Q5TZJ5 1347 aa22.2■■□□□ 1.14
DDX54-204ENST00000546898 OVOS2A0A0J9YW53 1432 aa22.2■■□□□ 1.14
DDX54-204ENST00000546898 OVOS2Q6IE36 1432 aa22.2■■□□□ 1.14
DDX54-204ENST00000546898 KIF20BQ96Q89 1820 aa22.18■■□□□ 1.14
DDX54-204ENST00000546898 EVA1CP58658 441 aa22.18■■□□□ 1.14
DDX54-204ENST00000546898 EIF4G2P78344 907 aaKnown RBP eCLIP22.18■■□□□ 1.143e-8■■■■□ 20.3
DDX54-204ENST00000546898 FAM98CQ17RN3 349 aaKnown RBP22.18■■□□□ 1.14
DDX54-204ENST00000546898 NME9Q86XW9 330 aa22.18■■□□□ 1.14
DDX54-204ENST00000546898 ARHGEF25Q86VW2 580 aa22.17■■□□□ 1.14
DDX54-204ENST00000546898 ZBTB7CA1YPR0 619 aa22.16■■□□□ 1.14
DDX54-204ENST00000546898 CRB1P82279 1406 aa22.15■■□□□ 1.14
DDX54-204ENST00000546898 WNK3Q9BYP7 1800 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms