RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 CABP1Q9NZU7 370 aa18.73■□□□□ 0.59
DDX55-213ENST00000545042 MARF1Q9Y4F3 1742 aaKnown RBP18.73■□□□□ 0.59
DDX55-213ENST00000545042 ATAD2Q6PL18 1390 aa18.72■□□□□ 0.59
DDX55-213ENST00000545042 ALS2Q96Q42 1657 aa18.72■□□□□ 0.59
DDX55-213ENST00000545042 SLC24A1O60721 1099 aa18.71■□□□□ 0.59
DDX55-213ENST00000545042 TRPC5Q9UL62 973 aaPredicted RBP18.71■□□□□ 0.59
DDX55-213ENST00000545042 BRD4O60885 1362 aaPredicted RBP18.7■□□□□ 0.58
DDX55-213ENST00000545042 RBM6P78332 1123 aaKnown RBP18.7■□□□□ 0.58
DDX55-213ENST00000545042 ST20-MTHFSA0A0A6YYL1 179 aa18.68■□□□□ 0.58
DDX55-213ENST00000545042 ABTB2Q8N961 1025 aa18.68■□□□□ 0.58
DDX55-213ENST00000545042 ABCA3Q99758 1704 aa18.68■□□□□ 0.58
DDX55-213ENST00000545042 ZNF692Q9BU19 519 aaPredicted RBP18.67■□□□□ 0.58
DDX55-213ENST00000545042 CDK12Q9NYV4 1490 aaPredicted RBP18.66■□□□□ 0.58
DDX55-213ENST00000545042 USP6P35125 1406 aa18.66■□□□□ 0.58
DDX55-213ENST00000545042 BCL9LQ86UU0 1499 aa18.65■□□□□ 0.58
DDX55-213ENST00000545042 NUTM2GQ5VZR2 741 aa18.65■□□□□ 0.58
DDX55-213ENST00000545042 UNC5CLQ8IV45 518 aa18.65■□□□□ 0.58
DDX55-213ENST00000545042 USP47Q96K76 1375 aa18.65■□□□□ 0.58
DDX55-213ENST00000545042 ATRNO75882 1429 aa18.65■□□□□ 0.58
DDX55-213ENST00000545042 SLIT2O94813 1529 aa18.64■□□□□ 0.58
DDX55-213ENST00000545042 NLRP13Q86W25 1043 aa18.64■□□□□ 0.57
DDX55-213ENST00000545042 PUS7Q96PZ0 661 aaKnown RBP18.64■□□□□ 0.57
DDX55-213ENST00000545042 FAM83GA6ND36 823 aa18.63■□□□□ 0.57
DDX55-213ENST00000545042 TMC1Q8TDI8 760 aa18.63■□□□□ 0.57
DDX55-213ENST00000545042 TESK2Q96S53 571 aa18.62■□□□□ 0.57
DDX55-213ENST00000545042 PRDM11Q9NQV5 511 aa18.62■□□□□ 0.57
DDX55-213ENST00000545042 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.61■□□□□ 0.57
DDX55-213ENST00000545042 CRYBG1Q9Y4K1 1723 aa18.6■□□□□ 0.57
DDX55-213ENST00000545042 KTN1Q86UP2 1357 aaKnown RBP18.6■□□□□ 0.57
DDX55-213ENST00000545042 TMF1P82094 1093 aa18.6■□□□□ 0.57
DDX55-213ENST00000545042 HDGFL2Q7Z4V5 671 aaPredicted RBP18.6■□□□□ 0.57
DDX55-213ENST00000545042 GJD4Q96KN9 370 aaPredicted RBP18.6■□□□□ 0.57
DDX55-213ENST00000545042 NWD2Q9ULI1 1742 aa18.6■□□□□ 0.57
DDX55-213ENST00000545042 PLCH1Q4KWH8 1693 aa18.6■□□□□ 0.57
DDX55-213ENST00000545042 CPSF1Q10570 1443 aaKnown RBP18.59■□□□□ 0.57
DDX55-213ENST00000545042 USP19O94966 1318 aa18.59■□□□□ 0.57
DDX55-213ENST00000545042 NLRP6P59044 892 aa18.59■□□□□ 0.57
DDX55-213ENST00000545042 BTG4Q9NY30 223 aa18.59■□□□□ 0.57
DDX55-213ENST00000545042 TERF2IPQ9NYB0 399 aa18.59■□□□□ 0.57
DDX55-213ENST00000545042 CCDC9Q9Y3X0 531 aaKnown RBP18.59■□□□□ 0.57
DDX55-213ENST00000545042 COL14A1Q05707 1796 aaKnown RBP18.59■□□□□ 0.57
DDX55-213ENST00000545042 PHRF1Q9P1Y6 1649 aaKnown RBP18.59■□□□□ 0.57
DDX55-213ENST00000545042 RGS12O14924 1447 aa18.58■□□□□ 0.57
DDX55-213ENST00000545042 AKAP12Q02952 1782 aa18.58■□□□□ 0.57
DDX55-213ENST00000545042 TTC21BQ7Z4L5 1316 aa18.58■□□□□ 0.57
DDX55-213ENST00000545042 TTC21AQ8NDW8 1320 aa18.58■□□□□ 0.57
DDX55-213ENST00000545042 ZC3H6P61129 1189 aaKnown RBP18.58■□□□□ 0.56
DDX55-213ENST00000545042 VPS72Q15906 364 aa18.58■□□□□ 0.56
DDX55-213ENST00000545042 SSH2Q76I76 1423 aa18.57■□□□□ 0.56
DDX55-213ENST00000545042 KIAA0232Q92628 1395 aa18.57■□□□□ 0.56
DDX55-213ENST00000545042 NINLQ9Y2I6 1382 aa18.57■□□□□ 0.56
DDX55-213ENST00000545042 CDCA8Q53HL2 280 aa18.57■□□□□ 0.56
DDX55-213ENST00000545042 SLC12A5Q9H2X9 1139 aa18.57■□□□□ 0.56
DDX55-213ENST00000545042 GCP02774 474 aa18.56■□□□□ 0.56
DDX55-213ENST00000545042 CHRNA2Q15822 529 aa18.54■□□□□ 0.56
DDX55-213ENST00000545042 NRKQ7Z2Y5 1582 aa18.54■□□□□ 0.56
DDX55-213ENST00000545042 CPDO75976 1380 aa18.54■□□□□ 0.56
DDX55-213ENST00000545042 MON2Q7Z3U7 1717 aa18.53■□□□□ 0.56
DDX55-213ENST00000545042 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.53■□□□□ 0.56
DDX55-213ENST00000545042 PIK3C2AO00443 1686 aa18.53■□□□□ 0.56
DDX55-213ENST00000545042 KCNH5Q8NCM2 988 aa18.52■□□□□ 0.56
DDX55-213ENST00000545042 CD163L1Q9NR16 1453 aa18.52■□□□□ 0.55
DDX55-213ENST00000545042 EDC4Q6P2E9 1401 aaKnown RBP18.51■□□□□ 0.55
DDX55-213ENST00000545042 EVA1CP58658 441 aa18.51■□□□□ 0.55
DDX55-213ENST00000545042 A0A1W2PP64 1363 aa18.51■□□□□ 0.55
DDX55-213ENST00000545042 NRAPQ86VF7 1730 aa18.51■□□□□ 0.55
DDX55-213ENST00000545042 GLI3P10071 1580 aa18.51■□□□□ 0.55
DDX55-213ENST00000545042 SLIT3O75094 1523 aa18.5■□□□□ 0.55
DDX55-213ENST00000545042 ZBTB7CA1YPR0 619 aa18.5■□□□□ 0.55
DDX55-213ENST00000545042 EIF4G2P78344 907 aaKnown RBP eCLIP18.5■□□□□ 0.55
DDX55-213ENST00000545042 STRN4Q9NRL3 753 aa18.5■□□□□ 0.55
DDX55-213ENST00000545042 A0A0G2JS52 829 aa18.48■□□□□ 0.55
DDX55-213ENST00000545042 MYT1Q01538 1121 aa18.48■□□□□ 0.55
DDX55-213ENST00000545042 SOX12O15370 315 aa18.47■□□□□ 0.55
DDX55-213ENST00000545042 NME9Q86XW9 330 aa18.47■□□□□ 0.55
DDX55-213ENST00000545042 SEPT12Q8IYM1 358 aa18.47■□□□□ 0.55
DDX55-213ENST00000545042 UPF1Q92900 1129 aaKnown RBP eCLIP18.47■□□□□ 0.55
DDX55-213ENST00000545042 SPATA31A5Q5VU36 1347 aa18.47■□□□□ 0.55
DDX55-213ENST00000545042 SPATA31A7Q8IWB4 1347 aa18.47■□□□□ 0.55
DDX55-213ENST00000545042 USP31Q70CQ4 1352 aa18.46■□□□□ 0.55
DDX55-213ENST00000545042 ANKRD36BQ8N2N9 1353 aa18.46■□□□□ 0.55
DDX55-213ENST00000545042 ONECUT3O60422 494 aaPredicted RBP18.46■□□□□ 0.55
DDX55-213ENST00000545042 AATKQ6ZMQ8 1374 aa18.45■□□□□ 0.54
DDX55-213ENST00000545042 FAM98CQ17RN3 349 aaKnown RBP18.45■□□□□ 0.54
DDX55-213ENST00000545042 CAMTA1Q9Y6Y1 1673 aa18.44■□□□□ 0.54
DDX55-213ENST00000545042 HSPA5P11021 654 aaKnown RBP18.44■□□□□ 0.54
DDX55-213ENST00000545042 ZRANB1Q9UGI0 708 aa18.44■□□□□ 0.54
DDX55-213ENST00000545042 SPATA31A1Q5TZJ5 1347 aa18.44■□□□□ 0.54
DDX55-213ENST00000545042 LMO7Q8WWI1 1683 aa18.44■□□□□ 0.54
DDX55-213ENST00000545042 ARHGEF25Q86VW2 580 aa18.43■□□□□ 0.54
DDX55-213ENST00000545042 LARP1Q6PKG0 1096 aaKnown RBP18.41■□□□□ 0.54
DDX55-213ENST00000545042 COG3Q96JB2 828 aa18.41■□□□□ 0.54
DDX55-213ENST00000545042 POLR3GLQ9BT43 218 aa18.41■□□□□ 0.54
DDX55-213ENST00000545042 USP35Q9P2H5 1018 aa18.41■□□□□ 0.54
DDX55-213ENST00000545042 USP54Q70EL1 1684 aa18.41■□□□□ 0.54
DDX55-213ENST00000545042 COL5A2P05997 1499 aaPredicted RBP18.4■□□□□ 0.54
DDX55-213ENST00000545042 NFAT5O94916 1531 aa18.4■□□□□ 0.54
DDX55-213ENST00000545042 KRT27Q7Z3Y8 459 aa18.4■□□□□ 0.54
DDX55-213ENST00000545042 TCP11L2Q8N4U5 519 aa18.39■□□□□ 0.53
DDX55-213ENST00000545042 BARGINQ6ZT62 677 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms