RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 CD163L1Q9NR16 1453 aa16.22■□□□□ 0.19
SNHG1-221ENST00000544983 WASHC2AQ641Q2 1341 aa16.22■□□□□ 0.19
SNHG1-221ENST00000544983 TNS3Q68CZ2 1445 aa16.22■□□□□ 0.19
SNHG1-221ENST00000544983 EDC4Q6P2E9 1401 aaKnown RBP16.22■□□□□ 0.19
SNHG1-221ENST00000544983 AKAP12Q02952 1782 aa16.22■□□□□ 0.19
SNHG1-221ENST00000544983 A0A1W2PP64 1363 aa16.22■□□□□ 0.19
SNHG1-221ENST00000544983 SSH2Q76I76 1423 aa16.21■□□□□ 0.19
SNHG1-221ENST00000544983 XPCQ01831 940 aaPredicted RBP16.21■□□□□ 0.19
SNHG1-221ENST00000544983 MYOM1P52179 1685 aa16.21■□□□□ 0.18
SNHG1-221ENST00000544983 PAK3O75914 559 aaPredicted RBP16.2■□□□□ 0.18
SNHG1-221ENST00000544983 MON2Q7Z3U7 1717 aa16.19■□□□□ 0.18
SNHG1-221ENST00000544983 TRPM3Q9HCF6 1732 aaPredicted RBP16.19■□□□□ 0.18
SNHG1-221ENST00000544983 SPATA31A6Q5VVP1 1343 aa16.19■□□□□ 0.18
SNHG1-221ENST00000544983 TTC21BQ7Z4L5 1316 aa16.19■□□□□ 0.18
SNHG1-221ENST00000544983 SHPRHQ149N8 1683 aa16.18■□□□□ 0.18
SNHG1-221ENST00000544983 PNPLA6Q8IY17 1366 aa16.17■□□□□ 0.18
SNHG1-221ENST00000544983 NLRP13Q86W25 1043 aa16.17■□□□□ 0.18
SNHG1-221ENST00000544983 ABTB2Q8N961 1025 aa16.17■□□□□ 0.18
SNHG1-221ENST00000544983 ALS2Q96Q42 1657 aa16.16■□□□□ 0.18
SNHG1-221ENST00000544983 ZNF316A6NFI3 1004 aaPredicted RBP16.16■□□□□ 0.18
SNHG1-221ENST00000544983 LMOD2Q6P5Q4 547 aa16.16■□□□□ 0.18
SNHG1-221ENST00000544983 PANK3Q9H999 370 aa16.16■□□□□ 0.18
SNHG1-221ENST00000544983 CGNL1Q0VF96 1302 aa16.16■□□□□ 0.18
SNHG1-221ENST00000544983 NRKQ7Z2Y5 1582 aa16.15■□□□□ 0.18
SNHG1-221ENST00000544983 COL22A1Q8NFW1 1626 aaPredicted RBP16.15■□□□□ 0.18
SNHG1-221ENST00000544983 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.14■□□□□ 0.17
SNHG1-221ENST00000544983 CARD14Q9BXL6 1004 aa16.14■□□□□ 0.17
SNHG1-221ENST00000544983 RGS17Q9UGC6 210 aaPredicted RBP16.14■□□□□ 0.17
SNHG1-221ENST00000544983 KNSTRNQ9Y448 316 aa16.14■□□□□ 0.17
SNHG1-221ENST00000544983 USP31Q70CQ4 1352 aa16.13■□□□□ 0.17
SNHG1-221ENST00000544983 NSD3Q9BZ95 1437 aa16.13■□□□□ 0.17
SNHG1-221ENST00000544983 NLRP6P59044 892 aa16.13■□□□□ 0.17
SNHG1-221ENST00000544983 NSD2O96028 1365 aa16.12■□□□□ 0.17
SNHG1-221ENST00000544983 USP19O94966 1318 aa16.11■□□□□ 0.17
SNHG1-221ENST00000544983 FYB1O15117 783 aa16.1■□□□□ 0.17
SNHG1-221ENST00000544983 HAP1P54257 671 aaPredicted RBP16.1■□□□□ 0.17
SNHG1-221ENST00000544983 KCNH5Q8NCM2 988 aa16.1■□□□□ 0.17
SNHG1-221ENST00000544983 COG3Q96JB2 828 aa16.1■□□□□ 0.17
SNHG1-221ENST00000544983 PIK3C2AO00443 1686 aa16.09■□□□□ 0.17
SNHG1-221ENST00000544983 USP54Q70EL1 1684 aa16.09■□□□□ 0.17
SNHG1-221ENST00000544983 PER1O15534 1290 aaPredicted RBP16.09■□□□□ 0.17
SNHG1-221ENST00000544983 NPC1L1Q9UHC9 1359 aa16.09■□□□□ 0.17
SNHG1-221ENST00000544983 NME9Q86XW9 330 aa16.08■□□□□ 0.16
SNHG1-221ENST00000544983 GCP02774 474 aa16.07■□□□□ 0.16
SNHG1-221ENST00000544983 OVOS2A0A0J9YW53 1432 aa16.07■□□□□ 0.16
SNHG1-221ENST00000544983 OVOS2Q6IE36 1432 aa16.07■□□□□ 0.16
SNHG1-221ENST00000544983 NUTM2GQ5VZR2 741 aa16.06■□□□□ 0.16
SNHG1-221ENST00000544983 SLIT3O75094 1523 aa16.05■□□□□ 0.16
SNHG1-221ENST00000544983 CPDO75976 1380 aa16.05■□□□□ 0.16
SNHG1-221ENST00000544983 AMER1Q5JTC6 1135 aaPredicted RBP16.05■□□□□ 0.16
SNHG1-221ENST00000544983 KIF20BQ96Q89 1820 aa16.05■□□□□ 0.16
SNHG1-221ENST00000544983 NUTM2BA6NNL0 878 aaPredicted RBP16.04■□□□□ 0.16
SNHG1-221ENST00000544983 NUTM2EB1AL46 878 aaPredicted RBP16.04■□□□□ 0.16
SNHG1-221ENST00000544983 DDX10Q13206 875 aaKnown RBP16.04■□□□□ 0.16
SNHG1-221ENST00000544983 NUTM2AQ8IVF1 878 aaPredicted RBP16.04■□□□□ 0.16
SNHG1-221ENST00000544983 CABLES1Q8TDN4 633 aa16.04■□□□□ 0.16
SNHG1-221ENST00000544983 GGNBP2Q9H3C7 697 aa16.04■□□□□ 0.16
SNHG1-221ENST00000544983 CRYBG1Q9Y4K1 1723 aa16.04■□□□□ 0.16
SNHG1-221ENST00000544983 MEX3CQ5U5Q3 659 aaKnown RBP16.03■□□□□ 0.16
SNHG1-221ENST00000544983 ABCA3Q99758 1704 aa16.02■□□□□ 0.16
SNHG1-221ENST00000544983 PHRF1Q9P1Y6 1649 aaKnown RBP16.02■□□□□ 0.16
SNHG1-221ENST00000544983 MORC1Q86VD1 984 aa16.01■□□□□ 0.15
SNHG1-221ENST00000544983 PRDM11Q9NQV5 511 aa16.01■□□□□ 0.15
SNHG1-221ENST00000544983 ZRANB1Q9UGI0 708 aa16.01■□□□□ 0.15
SNHG1-221ENST00000544983 LRP6O75581 1613 aa16.01■□□□□ 0.15
SNHG1-221ENST00000544983 ANKRD26Q9UPS8 1709 aa16■□□□□ 0.15
SNHG1-221ENST00000544983 MARF1Q9Y4F3 1742 aaKnown RBP16■□□□□ 0.15
SNHG1-221ENST00000544983 ADAMTS2O95450 1211 aa16■□□□□ 0.15
SNHG1-221ENST00000544983 ARHGEF25Q86VW2 580 aa16■□□□□ 0.15
SNHG1-221ENST00000544983 KIF24Q5T7B8 1368 aa16■□□□□ 0.15
SNHG1-221ENST00000544983 AATKQ6ZMQ8 1374 aa16■□□□□ 0.15
SNHG1-221ENST00000544983 NFAT5O94916 1531 aa15.99■□□□□ 0.15
SNHG1-221ENST00000544983 POTEAQ6S8J7 498 aa15.99■□□□□ 0.15
SNHG1-221ENST00000544983 KIAA0232Q92628 1395 aa15.99■□□□□ 0.15
SNHG1-221ENST00000544983 ABCC6O95255 1503 aa15.99■□□□□ 0.15
SNHG1-221ENST00000544983 PLEKHG5O94827 1062 aa15.98■□□□□ 0.15
SNHG1-221ENST00000544983 ZC3H6P61129 1189 aaKnown RBP15.98■□□□□ 0.15
SNHG1-221ENST00000544983 FNBP4Q8N3X1 1017 aaPredicted RBP15.98■□□□□ 0.15
SNHG1-221ENST00000544983 NGLY1Q96IV0 654 aa15.98■□□□□ 0.15
SNHG1-221ENST00000544983 FAM83GA6ND36 823 aa15.97■□□□□ 0.15
SNHG1-221ENST00000544983 C8orf37Q96NL8 207 aa15.97■□□□□ 0.15
SNHG1-221ENST00000544983 COL14A1Q05707 1796 aaKnown RBP15.97■□□□□ 0.15
SNHG1-221ENST00000544983 SOX12O15370 315 aa15.95■□□□□ 0.14
SNHG1-221ENST00000544983 CC2D1BQ5T0F9 858 aaKnown RBP15.95■□□□□ 0.14
SNHG1-221ENST00000544983 ZNF772Q68DY9 489 aaPredicted RBP15.95■□□□□ 0.14
SNHG1-221ENST00000544983 RTL1A6NKG5 1358 aa15.95■□□□□ 0.14
SNHG1-221ENST00000544983 SLIT2O94813 1529 aa15.94■□□□□ 0.14
SNHG1-221ENST00000544983 NWD2Q9ULI1 1742 aa15.94■□□□□ 0.14
SNHG1-221ENST00000544983 RALBP1Q15311 655 aa15.94■□□□□ 0.14
SNHG1-221ENST00000544983 IP6K1Q92551 441 aa15.94■□□□□ 0.14
SNHG1-221ENST00000544983 MAP3K19Q56UN5 1328 aa15.94■□□□□ 0.14
SNHG1-221ENST00000544983 AMPHP49418 695 aa15.93■□□□□ 0.14
SNHG1-221ENST00000544983 BLMP54132 1417 aaPredicted RBP15.93■□□□□ 0.14
SNHG1-221ENST00000544983 CHRNA2Q15822 529 aa15.92■□□□□ 0.14
SNHG1-221ENST00000544983 UNC5CLQ8IV45 518 aa15.92■□□□□ 0.14
SNHG1-221ENST00000544983 BTG4Q9NY30 223 aa15.92■□□□□ 0.14
SNHG1-221ENST00000544983 POLKQ9UBT6 870 aa15.92■□□□□ 0.14
SNHG1-221ENST00000544983 AFF2P51816 1311 aa15.92■□□□□ 0.14
SNHG1-221ENST00000544983 FLT4P35916 1363 aa15.91■□□□□ 0.14
SNHG1-221ENST00000544983 USP21Q9UK80 565 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms