RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	EMID1	Q96A84	441 aa	Predicted RBP	10.84	□□□□□ -0.67
LEMD3-205	ENST00000544506	ZBTB24	O43167	697 aa	Predicted RBP	10.83	□□□□□ -0.68
LEMD3-205	ENST00000544506	ABL2	P42684	1182 aa		10.83	□□□□□ -0.68
LEMD3-205	ENST00000544506	PNMA1	Q8ND90	353 aa		10.83	□□□□□ -0.68
LEMD3-205	ENST00000544506	LIAT1	Q6ZQX7	453 aa		10.82	□□□□□ -0.68
LEMD3-205	ENST00000544506	ERICH6	Q7L0X2	663 aa		10.82	□□□□□ -0.68
LEMD3-205	ENST00000544506	ARMC2	Q8NEN0	867 aa		10.82	□□□□□ -0.68
LEMD3-205	ENST00000544506	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.82	□□□□□ -0.68
LEMD3-205	ENST00000544506	TRIM32	Q13049	653 aa		10.81	□□□□□ -0.68
LEMD3-205	ENST00000544506	LINC01559	Q495D7	138 aa		10.81	□□□□□ -0.68
LEMD3-205	ENST00000544506	BAP1	Q92560	729 aa		10.81	□□□□□ -0.68
LEMD3-205	ENST00000544506		A6NJR5	290 aa		10.8	□□□□□ -0.68
LEMD3-205	ENST00000544506	RPIA	P49247	311 aa		10.8	□□□□□ -0.68
LEMD3-205	ENST00000544506	NBPF14	Q5TI25	921 aa		10.8	□□□□□ -0.68
LEMD3-205	ENST00000544506	ZMYND15	Q9H091	742 aa		10.8	□□□□□ -0.68
LEMD3-205	ENST00000544506	IRF5	Q13568	498 aa		10.79	□□□□□ -0.68
LEMD3-205	ENST00000544506	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.79	□□□□□ -0.68
LEMD3-205	ENST00000544506	SLC19A1	P41440	591 aa		10.78	□□□□□ -0.68
LEMD3-205	ENST00000544506	PROSER2	Q86WR7	435 aa	Predicted RBP	10.78	□□□□□ -0.68
LEMD3-205	ENST00000544506	ZNF511	Q8NB15	262 aa		10.78	□□□□□ -0.68
LEMD3-205	ENST00000544506	SH3BP2	P78314	561 aa		10.76	□□□□□ -0.69
LEMD3-205	ENST00000544506	PDXDC2P	Q6P474	469 aa		10.76	□□□□□ -0.69
LEMD3-205	ENST00000544506	SKOR1	P84550	965 aa		10.75	□□□□□ -0.69
LEMD3-205	ENST00000544506	SH3BP5L	Q7L8J4	393 aa		10.75	□□□□□ -0.69
LEMD3-205	ENST00000544506	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.75	□□□□□ -0.69
LEMD3-205	ENST00000544506	FOXJ1	Q92949	421 aa		10.75	□□□□□ -0.69
LEMD3-205	ENST00000544506	PRKD2	Q9BZL6	878 aa		10.75	□□□□□ -0.69
LEMD3-205	ENST00000544506	CD2BP2	O95400	341 aa	Known RBP	10.74	□□□□□ -0.69
LEMD3-205	ENST00000544506	WNT7B	P56706	349 aa		10.74	□□□□□ -0.69
LEMD3-205	ENST00000544506	SPRYD7	Q5W111	196 aa		10.74	□□□□□ -0.69
LEMD3-205	ENST00000544506	ZBBX	A8MT70	800 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	FBXO45	P0C2W1	286 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	PTK2	Q05397	1052 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	SH3RF1	Q7Z6J0	888 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	WWC1	Q8IX03	1113 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	OCSTAMP	Q9BR26	566 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	GPSM3	Q9Y4H4	160 aa		10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506		V9GY48	417 aa	Predicted RBP	10.73	□□□□□ -0.69
LEMD3-205	ENST00000544506	AGER	Q15109	404 aa		10.72	□□□□□ -0.69
LEMD3-205	ENST00000544506	C4orf48	Q5BLP8	95 aa		10.72	□□□□□ -0.69
LEMD3-205	ENST00000544506	ARHGAP9	Q9BRR9	750 aa		10.72	□□□□□ -0.69
LEMD3-205	ENST00000544506	TRAK2	O60296	914 aa		10.71	□□□□□ -0.69
LEMD3-205	ENST00000544506	VAC14	Q08AM6	782 aa		10.71	□□□□□ -0.69
LEMD3-205	ENST00000544506	NR1H3	Q13133	447 aa		10.71	□□□□□ -0.69
LEMD3-205	ENST00000544506	BPHL	Q86WA6	291 aa	Predicted RBP	10.71	□□□□□ -0.69
LEMD3-205	ENST00000544506	CARD14	Q9BXL6	1004 aa		10.71	□□□□□ -0.69
LEMD3-205	ENST00000544506	MAGEB6P1	A0A0J9YX57	407 aa		10.7	□□□□□ -0.7
LEMD3-205	ENST00000544506	WASHC4	Q2M389	1173 aa		10.7	□□□□□ -0.7
LEMD3-205	ENST00000544506	ZNF697	Q5TEC3	545 aa		10.7	□□□□□ -0.7
LEMD3-205	ENST00000544506	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.7	□□□□□ -0.7
LEMD3-205	ENST00000544506	ZNF598	Q86UK7	904 aa	Known RBP	10.69	□□□□□ -0.7
LEMD3-205	ENST00000544506	POM121C	A8CG34	1229 aa		10.68	□□□□□ -0.7
LEMD3-205	ENST00000544506	RC3H1	Q5TC82	1133 aa	Known RBP	10.68	□□□□□ -0.7
LEMD3-205	ENST00000544506	ADAM32	Q8TC27	787 aa		10.68	□□□□□ -0.7
LEMD3-205	ENST00000544506	ZBTB33	Q86T24	672 aa		10.67	□□□□□ -0.7
LEMD3-205	ENST00000544506	EHBP1	Q8NDI1	1231 aa		10.67	□□□□□ -0.7
LEMD3-205	ENST00000544506	C1QTNF2	Q9BXJ5	285 aa		10.67	□□□□□ -0.7
LEMD3-205	ENST00000544506	RGS20	O76081	388 aa		10.66	□□□□□ -0.7
LEMD3-205	ENST00000544506	ERFE	Q4G0M1	354 aa		10.66	□□□□□ -0.7
LEMD3-205	ENST00000544506	WNT7A	O00755	349 aa		10.65	□□□□□ -0.7
LEMD3-205	ENST00000544506	VARS	P26640	1264 aa	Known RBP	10.65	□□□□□ -0.7
LEMD3-205	ENST00000544506	MRGPRX2	Q96LB1	330 aa		10.64	□□□□□ -0.71
LEMD3-205	ENST00000544506	PKD2L1	Q9P0L9	805 aa		10.64	□□□□□ -0.71
LEMD3-205	ENST00000544506	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
LEMD3-205	ENST00000544506	FOXC1	Q12948	553 aa		10.63	□□□□□ -0.71
LEMD3-205	ENST00000544506	FAM174A	Q8TBP5	190 aa		10.63	□□□□□ -0.71
LEMD3-205	ENST00000544506	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.63	□□□□□ -0.71
LEMD3-205	ENST00000544506	PCDHB9	Q9Y5E1	797 aa		10.63	□□□□□ -0.71
LEMD3-205	ENST00000544506	TRMT44	Q8IYL2	757 aa	Known RBP	10.62	□□□□□ -0.71
LEMD3-205	ENST00000544506	SLC10A4	Q96EP9	437 aa		10.62	□□□□□ -0.71
LEMD3-205	ENST00000544506	DZIP3	Q86Y13	1208 aa	Known RBP	10.61	□□□□□ -0.71
LEMD3-205	ENST00000544506	ADAMTS19	Q8TE59	1207 aa		10.61	□□□□□ -0.71
LEMD3-205	ENST00000544506	TLL2	Q9Y6L7	1015 aa		10.61	□□□□□ -0.71
LEMD3-205	ENST00000544506	ARID3C	A6NKF2	412 aa		10.6	□□□□□ -0.71
LEMD3-205	ENST00000544506	SIAH2	O43255	324 aa		10.6	□□□□□ -0.71
LEMD3-205	ENST00000544506	GDF9	O60383	454 aa		10.6	□□□□□ -0.71
LEMD3-205	ENST00000544506	SOX11	P35716	441 aa		10.6	□□□□□ -0.71
LEMD3-205	ENST00000544506	TNFRSF10A	O00220	468 aa		10.59	□□□□□ -0.71
LEMD3-205	ENST00000544506	SUPT5H	O00267	1087 aa	Known RBP	10.59	□□□□□ -0.71
LEMD3-205	ENST00000544506	TRIM67	Q6ZTA4	783 aa		10.59	□□□□□ -0.71
LEMD3-205	ENST00000544506	GLMN	Q92990	594 aa		10.59	□□□□□ -0.71
LEMD3-205	ENST00000544506	ALG2	Q9H553	416 aa		10.59	□□□□□ -0.71
LEMD3-205	ENST00000544506	SEMA3F	Q13275	785 aa		10.58	□□□□□ -0.72
LEMD3-205	ENST00000544506	MCCD1	P59942	119 aa	Predicted RBP	10.57	□□□□□ -0.72
LEMD3-205	ENST00000544506	ZNF592	Q92610	1267 aa		10.57	□□□□□ -0.72
LEMD3-205	ENST00000544506	MAP4K5	Q9Y4K4	846 aa		10.57	□□□□□ -0.72
LEMD3-205	ENST00000544506	ARID5B	Q14865	1188 aa		10.56	□□□□□ -0.72
LEMD3-205	ENST00000544506	HDGFL1	Q5TGJ6	251 aa		10.56	□□□□□ -0.72
LEMD3-205	ENST00000544506	CDK15	Q96Q40	435 aa		10.56	□□□□□ -0.72
LEMD3-205	ENST00000544506	CDV3	Q9UKY7	258 aa	Known RBP	10.56	□□□□□ -0.72
LEMD3-205	ENST00000544506	PRR20E	P86478	221 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	PRR20C	P86479	221 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	PRR20D	P86480	221 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	PRR20B	P86481	221 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	PRR20A	P86496	221 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	VASH1	Q7L8A9	365 aa	Predicted RBP	10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	MPND	Q8N594	471 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	CALR3	Q96L12	384 aa	Known RBP	10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	C1orf115	Q9H7X2	142 aa		10.55	□□□□□ -0.72
LEMD3-205	ENST00000544506	NBPF20	Q3BBV1	942 aa		10.54	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms