RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 EDC4Q6P2E9 1401 aaKnown RBP16.79■□□□□ 0.28
DDX55-210ENST00000543016 SSH2Q76I76 1423 aa16.79■□□□□ 0.28
DDX55-210ENST00000543016 PHLPP1O60346 1717 aa16.79■□□□□ 0.28
DDX55-210ENST00000543016 A0A1W2PP64 1363 aa16.79■□□□□ 0.28
DDX55-210ENST00000543016 JCADQ9P266 1359 aa16.79■□□□□ 0.28
DDX55-210ENST00000543016 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
DDX55-210ENST00000543016 XPCQ01831 940 aaPredicted RBP16.78■□□□□ 0.28
DDX55-210ENST00000543016 PPP4R3CPQ6ZMV5 832 aa16.78■□□□□ 0.28
DDX55-210ENST00000543016 TNS3Q68CZ2 1445 aa16.78■□□□□ 0.28
DDX55-210ENST00000543016 TTC21BQ7Z4L5 1316 aa16.77■□□□□ 0.28
DDX55-210ENST00000543016 ZNF316A6NFI3 1004 aaPredicted RBP16.77■□□□□ 0.28
DDX55-210ENST00000543016 PAK3O75914 559 aaPredicted RBP16.77■□□□□ 0.28
DDX55-210ENST00000543016 AKAP12Q02952 1782 aa16.77■□□□□ 0.27
DDX55-210ENST00000543016 PANK3Q9H999 370 aa16.76■□□□□ 0.27
DDX55-210ENST00000543016 ILDR1Q86SU0 546 aaPredicted RBP16.75■□□□□ 0.27
DDX55-210ENST00000543016 ABTB2Q8N961 1025 aa16.75■□□□□ 0.27
DDX55-210ENST00000543016 MYOM1P52179 1685 aa16.75■□□□□ 0.27
DDX55-210ENST00000543016 SPATA31A6Q5VVP1 1343 aa16.74■□□□□ 0.27
DDX55-210ENST00000543016 MON2Q7Z3U7 1717 aa16.74■□□□□ 0.27
DDX55-210ENST00000543016 NLRP13Q86W25 1043 aa16.74■□□□□ 0.27
DDX55-210ENST00000543016 PNPLA6Q8IY17 1366 aa16.74■□□□□ 0.27
DDX55-210ENST00000543016 TRPM3Q9HCF6 1732 aaPredicted RBP16.73■□□□□ 0.27
DDX55-210ENST00000543016 LMOD2Q6P5Q4 547 aa16.73■□□□□ 0.27
DDX55-210ENST00000543016 CARD14Q9BXL6 1004 aa16.73■□□□□ 0.27
DDX55-210ENST00000543016 CGNL1Q0VF96 1302 aa16.72■□□□□ 0.27
DDX55-210ENST00000543016 KNSTRNQ9Y448 316 aa16.72■□□□□ 0.27
DDX55-210ENST00000543016 USP31Q70CQ4 1352 aa16.72■□□□□ 0.27
DDX55-210ENST00000543016 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.71■□□□□ 0.27
DDX55-210ENST00000543016 NSD3Q9BZ95 1437 aa16.7■□□□□ 0.26
DDX55-210ENST00000543016 SHPRHQ149N8 1683 aa16.7■□□□□ 0.26
DDX55-210ENST00000543016 ALS2Q96Q42 1657 aa16.7■□□□□ 0.26
DDX55-210ENST00000543016 NLRP6P59044 892 aa16.7■□□□□ 0.26
DDX55-210ENST00000543016 NRKQ7Z2Y5 1582 aa16.69■□□□□ 0.26
DDX55-210ENST00000543016 NSD2O96028 1365 aa16.69■□□□□ 0.26
DDX55-210ENST00000543016 COL22A1Q8NFW1 1626 aaPredicted RBP16.69■□□□□ 0.26
DDX55-210ENST00000543016 FYB1O15117 783 aa16.68■□□□□ 0.26
DDX55-210ENST00000543016 PER1O15534 1290 aaPredicted RBP16.68■□□□□ 0.26
DDX55-210ENST00000543016 KCNH5Q8NCM2 988 aa16.68■□□□□ 0.26
DDX55-210ENST00000543016 MED1Q15648 1581 aaPredicted RBP16.68■□□□□ 0.26
DDX55-210ENST00000543016 USP19O94966 1318 aa16.68■□□□□ 0.26
DDX55-210ENST00000543016 NPC1L1Q9UHC9 1359 aa16.67■□□□□ 0.26
DDX55-210ENST00000543016 NME9Q86XW9 330 aa16.67■□□□□ 0.26
DDX55-210ENST00000543016 COG3Q96JB2 828 aa16.67■□□□□ 0.26
DDX55-210ENST00000543016 HAP1P54257 671 aaPredicted RBP16.66■□□□□ 0.26
DDX55-210ENST00000543016 GCP02774 474 aa16.64■□□□□ 0.25
DDX55-210ENST00000543016 DDX10Q13206 875 aaKnown RBP16.64■□□□□ 0.25
DDX55-210ENST00000543016 AMER1Q5JTC6 1135 aaPredicted RBP16.64■□□□□ 0.25
DDX55-210ENST00000543016 NUTM2GQ5VZR2 741 aa16.64■□□□□ 0.25
DDX55-210ENST00000543016 OVOS2A0A0J9YW53 1432 aa16.63■□□□□ 0.25
DDX55-210ENST00000543016 OVOS2Q6IE36 1432 aa16.63■□□□□ 0.25
DDX55-210ENST00000543016 PIK3C2AO00443 1686 aa16.63■□□□□ 0.25
DDX55-210ENST00000543016 USP54Q70EL1 1684 aa16.62■□□□□ 0.25
DDX55-210ENST00000543016 GGNBP2Q9H3C7 697 aa16.62■□□□□ 0.25
DDX55-210ENST00000543016 SLIT3O75094 1523 aa16.61■□□□□ 0.25
DDX55-210ENST00000543016 NUTM2BA6NNL0 878 aaPredicted RBP16.61■□□□□ 0.25
DDX55-210ENST00000543016 NUTM2EB1AL46 878 aaPredicted RBP16.61■□□□□ 0.25
DDX55-210ENST00000543016 NUTM2AQ8IVF1 878 aaPredicted RBP16.61■□□□□ 0.25
DDX55-210ENST00000543016 CABLES1Q8TDN4 633 aa16.61■□□□□ 0.25
DDX55-210ENST00000543016 CPDO75976 1380 aa16.61■□□□□ 0.25
DDX55-210ENST00000543016 MORC1Q86VD1 984 aa16.59■□□□□ 0.25
DDX55-210ENST00000543016 ZRANB1Q9UGI0 708 aa16.59■□□□□ 0.25
DDX55-210ENST00000543016 MEX3CQ5U5Q3 659 aaKnown RBP16.58■□□□□ 0.24
DDX55-210ENST00000543016 AATKQ6ZMQ8 1374 aa16.58■□□□□ 0.24
DDX55-210ENST00000543016 KIF20BQ96Q89 1820 aa16.58■□□□□ 0.24
DDX55-210ENST00000543016 ADAMTS2O95450 1211 aa16.57■□□□□ 0.24
DDX55-210ENST00000543016 ARHGEF25Q86VW2 580 aa16.57■□□□□ 0.24
DDX55-210ENST00000543016 PRDM11Q9NQV5 511 aa16.57■□□□□ 0.24
DDX55-210ENST00000543016 CRYBG1Q9Y4K1 1723 aa16.56■□□□□ 0.24
DDX55-210ENST00000543016 KIF24Q5T7B8 1368 aa16.56■□□□□ 0.24
DDX55-210ENST00000543016 PHRF1Q9P1Y6 1649 aaKnown RBP16.56■□□□□ 0.24
DDX55-210ENST00000543016 KIAA0232Q92628 1395 aa16.55■□□□□ 0.24
DDX55-210ENST00000543016 PLEKHG5O94827 1062 aa16.55■□□□□ 0.24
DDX55-210ENST00000543016 ZC3H6P61129 1189 aaKnown RBP16.55■□□□□ 0.24
DDX55-210ENST00000543016 LRP6O75581 1613 aa16.55■□□□□ 0.24
DDX55-210ENST00000543016 NFAT5O94916 1531 aa16.55■□□□□ 0.24
DDX55-210ENST00000543016 ABCA3Q99758 1704 aa16.54■□□□□ 0.24
DDX55-210ENST00000543016 CC2D1BQ5T0F9 858 aaKnown RBP16.54■□□□□ 0.24
DDX55-210ENST00000543016 FNBP4Q8N3X1 1017 aaPredicted RBP16.54■□□□□ 0.24
DDX55-210ENST00000543016 NGLY1Q96IV0 654 aa16.54■□□□□ 0.24
DDX55-210ENST00000543016 ABCC6O95255 1503 aa16.54■□□□□ 0.24
DDX55-210ENST00000543016 ANKRD26Q9UPS8 1709 aa16.53■□□□□ 0.24
DDX55-210ENST00000543016 MARF1Q9Y4F3 1742 aaKnown RBP16.53■□□□□ 0.24
DDX55-210ENST00000543016 FAM83GA6ND36 823 aa16.53■□□□□ 0.24
DDX55-210ENST00000543016 RALBP1Q15311 655 aa16.53■□□□□ 0.24
DDX55-210ENST00000543016 SOX12O15370 315 aa16.52■□□□□ 0.24
DDX55-210ENST00000543016 C8orf37Q96NL8 207 aa16.52■□□□□ 0.24
DDX55-210ENST00000543016 RTL1A6NKG5 1358 aa16.51■□□□□ 0.23
DDX55-210ENST00000543016 MAP3K19Q56UN5 1328 aa16.5■□□□□ 0.23
DDX55-210ENST00000543016 AMPHP49418 695 aa16.5■□□□□ 0.23
DDX55-210ENST00000543016 ZNF772Q68DY9 489 aaPredicted RBP16.5■□□□□ 0.23
DDX55-210ENST00000543016 IP6K1Q92551 441 aa16.5■□□□□ 0.23
DDX55-210ENST00000543016 COL14A1Q05707 1796 aaKnown RBP16.5■□□□□ 0.23
DDX55-210ENST00000543016 SLIT2O94813 1529 aa16.5■□□□□ 0.23
DDX55-210ENST00000543016 BLMP54132 1417 aaPredicted RBP16.49■□□□□ 0.23
DDX55-210ENST00000543016 POLKQ9UBT6 870 aa16.49■□□□□ 0.23
DDX55-210ENST00000543016 PARD3Q8TEW0 1356 aa16.49■□□□□ 0.23
DDX55-210ENST00000543016 CHRNA2Q15822 529 aa16.48■□□□□ 0.23
DDX55-210ENST00000543016 UNC5CLQ8IV45 518 aa16.48■□□□□ 0.23
DDX55-210ENST00000543016 BTG4Q9NY30 223 aa16.48■□□□□ 0.23
DDX55-210ENST00000543016 FLT4P35916 1363 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms