RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 A0A1W2PP64 1363 aa15.99■□□□□ 0.15
YBX3-213ENST00000542641 KTN1Q86UP2 1357 aaKnown RBP15.99■□□□□ 0.15
YBX3-213ENST00000542641 ANKRD36BQ8N2N9 1353 aa15.99■□□□□ 0.15
YBX3-213ENST00000542641 FBXO41Q8TF61 875 aa15.98■□□□□ 0.15
YBX3-213ENST00000542641 CD163L1Q9NR16 1453 aa15.97■□□□□ 0.15
YBX3-213ENST00000542641 SOS2Q07890 1332 aaPredicted RBP15.96■□□□□ 0.15
YBX3-213ENST00000542641 PAK3O75914 559 aaPredicted RBP15.96■□□□□ 0.15
YBX3-213ENST00000542641 DDX10Q13206 875 aaKnown RBP15.96■□□□□ 0.15
YBX3-213ENST00000542641 MYOM1P52179 1685 aa15.95■□□□□ 0.14
YBX3-213ENST00000542641 USP6P35125 1406 aa15.95■□□□□ 0.14
YBX3-213ENST00000542641 CARD14Q9BXL6 1004 aa15.95■□□□□ 0.14
YBX3-213ENST00000542641 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
YBX3-213ENST00000542641 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.94■□□□□ 0.14
YBX3-213ENST00000542641 PXDNQ92626 1479 aa15.93■□□□□ 0.14
YBX3-213ENST00000542641 BRD4O60885 1362 aaPredicted RBP15.93■□□□□ 0.14
YBX3-213ENST00000542641 LMOD2Q6P5Q4 547 aa15.93■□□□□ 0.14
YBX3-213ENST00000542641 LRRC59Q96AG4 307 aaKnown RBP15.93■□□□□ 0.14
YBX3-213ENST00000542641 AHDC1Q5TGY3 1603 aaPredicted RBP15.93■□□□□ 0.14
YBX3-213ENST00000542641 TTC21BQ7Z4L5 1316 aa15.93■□□□□ 0.14
YBX3-213ENST00000542641 SBNO1A3KN83 1393 aa15.92■□□□□ 0.14
YBX3-213ENST00000542641 HSPA1LP34931 641 aa15.92■□□□□ 0.14
YBX3-213ENST00000542641 KNSTRNQ9Y448 316 aa15.92■□□□□ 0.14
YBX3-213ENST00000542641 NHSL1Q5SYE7 1610 aa15.92■□□□□ 0.14
YBX3-213ENST00000542641 EDC4Q6P2E9 1401 aaKnown RBP15.92■□□□□ 0.14
YBX3-213ENST00000542641 ABTB2Q8N961 1025 aa15.91■□□□□ 0.14
YBX3-213ENST00000542641 SSH2Q76I76 1423 aa15.91■□□□□ 0.14
YBX3-213ENST00000542641 NSD3Q9BZ95 1437 aa15.91■□□□□ 0.14
YBX3-213ENST00000542641 SPATA31A3Q5VYP0 1347 aa15.91■□□□□ 0.14
YBX3-213ENST00000542641 TTC21AQ8NDW8 1320 aa15.91■□□□□ 0.14
YBX3-213ENST00000542641 AKAP12Q02952 1782 aa15.9■□□□□ 0.14
YBX3-213ENST00000542641 PHLPP1O60346 1717 aa15.89■□□□□ 0.13
YBX3-213ENST00000542641 PER1O15534 1290 aaPredicted RBP15.89■□□□□ 0.13
YBX3-213ENST00000542641 CGNL1Q0VF96 1302 aa15.89■□□□□ 0.13
YBX3-213ENST00000542641 TNS3Q68CZ2 1445 aa15.88■□□□□ 0.13
YBX3-213ENST00000542641 NLRP6P59044 892 aa15.88■□□□□ 0.13
YBX3-213ENST00000542641 NUTM2GQ5VZR2 741 aa15.88■□□□□ 0.13
YBX3-213ENST00000542641 NME9Q86XW9 330 aa15.88■□□□□ 0.13
YBX3-213ENST00000542641 MON2Q7Z3U7 1717 aa15.88■□□□□ 0.13
YBX3-213ENST00000542641 ARHGEF10O15013 1369 aa15.87■□□□□ 0.13
YBX3-213ENST00000542641 FYB1O15117 783 aa15.87■□□□□ 0.13
YBX3-213ENST00000542641 COL16A1Q07092 1604 aaPredicted RBP15.86■□□□□ 0.13
YBX3-213ENST00000542641 TRPM3Q9HCF6 1732 aaPredicted RBP15.86■□□□□ 0.13
YBX3-213ENST00000542641 PLEKHG5O94827 1062 aa15.86■□□□□ 0.13
YBX3-213ENST00000542641 C1QBPQ07021 282 aaKnown RBP15.86■□□□□ 0.13
YBX3-213ENST00000542641 NLRP13Q86W25 1043 aa15.86■□□□□ 0.13
YBX3-213ENST00000542641 GGNBP2Q9H3C7 697 aa15.86■□□□□ 0.13
YBX3-213ENST00000542641 ZRANB1Q9UGI0 708 aa15.86■□□□□ 0.13
YBX3-213ENST00000542641 NRKQ7Z2Y5 1582 aa15.85■□□□□ 0.13
YBX3-213ENST00000542641 CNGB1Q14028 1251 aaPredicted RBP15.84■□□□□ 0.13
YBX3-213ENST00000542641 AMER1Q5JTC6 1135 aaPredicted RBP15.84■□□□□ 0.13
YBX3-213ENST00000542641 COG3Q96JB2 828 aa15.84■□□□□ 0.13
YBX3-213ENST00000542641 PNPLA6Q8IY17 1366 aa15.84■□□□□ 0.13
YBX3-213ENST00000542641 JCADQ9P266 1359 aa15.84■□□□□ 0.13
YBX3-213ENST00000542641 USP31Q70CQ4 1352 aa15.83■□□□□ 0.12
YBX3-213ENST00000542641 CC2D1BQ5T0F9 858 aaKnown RBP15.82■□□□□ 0.12
YBX3-213ENST00000542641 CABLES1Q8TDN4 633 aa15.82■□□□□ 0.12
YBX3-213ENST00000542641 NSD2O96028 1365 aa15.81■□□□□ 0.12
YBX3-213ENST00000542641 HAP1P54257 671 aaPredicted RBP15.81■□□□□ 0.12
YBX3-213ENST00000542641 ALS2Q96Q42 1657 aa15.81■□□□□ 0.12
YBX3-213ENST00000542641 PIK3C2AO00443 1686 aa15.8■□□□□ 0.12
YBX3-213ENST00000542641 MORC1Q86VD1 984 aa15.8■□□□□ 0.12
YBX3-213ENST00000542641 NPC1L1Q9UHC9 1359 aa15.79■□□□□ 0.12
YBX3-213ENST00000542641 USP19O94966 1318 aa15.79■□□□□ 0.12
YBX3-213ENST00000542641 SOX12O15370 315 aa15.79■□□□□ 0.12
YBX3-213ENST00000542641 GCP02774 474 aa15.79■□□□□ 0.12
YBX3-213ENST00000542641 ILDR1Q86SU0 546 aaPredicted RBP15.79■□□□□ 0.12
YBX3-213ENST00000542641 OVOS2A0A0J9YW53 1432 aa15.78■□□□□ 0.12
YBX3-213ENST00000542641 OVOS2Q6IE36 1432 aa15.78■□□□□ 0.12
YBX3-213ENST00000542641 NUTM2BA6NNL0 878 aaPredicted RBP15.78■□□□□ 0.12
YBX3-213ENST00000542641 NUTM2EB1AL46 878 aaPredicted RBP15.78■□□□□ 0.12
YBX3-213ENST00000542641 NUTM2AQ8IVF1 878 aaPredicted RBP15.78■□□□□ 0.12
YBX3-213ENST00000542641 KCNH5Q8NCM2 988 aa15.78■□□□□ 0.12
YBX3-213ENST00000542641 SPATA31A6Q5VVP1 1343 aa15.77■□□□□ 0.12
YBX3-213ENST00000542641 TNNT2P45379 298 aaPredicted RBP15.77■□□□□ 0.12
YBX3-213ENST00000542641 MED1Q15648 1581 aaPredicted RBP15.76■□□□□ 0.11
YBX3-213ENST00000542641 KIF20BQ96Q89 1820 aa15.76■□□□□ 0.11
YBX3-213ENST00000542641 SAMD1Q6SPF0 538 aaPredicted RBP15.76■□□□□ 0.11
YBX3-213ENST00000542641 FBLN1P23142 703 aa15.75■□□□□ 0.11
YBX3-213ENST00000542641 ZC3H6P61129 1189 aaKnown RBP15.75■□□□□ 0.11
YBX3-213ENST00000542641 SHPRHQ149N8 1683 aa15.75■□□□□ 0.11
YBX3-213ENST00000542641 COL22A1Q8NFW1 1626 aaPredicted RBP15.75■□□□□ 0.11
YBX3-213ENST00000542641 ADAMTS2O95450 1211 aa15.74■□□□□ 0.11
YBX3-213ENST00000542641 SLIT3O75094 1523 aa15.73■□□□□ 0.11
YBX3-213ENST00000542641 ZBTB7CA1YPR0 619 aa15.73■□□□□ 0.11
YBX3-213ENST00000542641 RALBP1Q15311 655 aa15.72■□□□□ 0.11
YBX3-213ENST00000542641 DIEXFQ68CQ4 756 aaKnown RBP15.72■□□□□ 0.11
YBX3-213ENST00000542641 USP54Q70EL1 1684 aa15.72■□□□□ 0.11
YBX3-213ENST00000542641 MARF1Q9Y4F3 1742 aaKnown RBP15.71■□□□□ 0.11
YBX3-213ENST00000542641 ANP32CO43423 234 aa15.71■□□□□ 0.11
YBX3-213ENST00000542641 RRS1Q15050 365 aaKnown RBP15.71■□□□□ 0.11
YBX3-213ENST00000542641 MEX3CQ5U5Q3 659 aaKnown RBP15.71■□□□□ 0.11
YBX3-213ENST00000542641 ARHGEF25Q86VW2 580 aa15.71■□□□□ 0.11
YBX3-213ENST00000542641 PRDM11Q9NQV5 511 aa15.71■□□□□ 0.11
YBX3-213ENST00000542641 AATKQ6ZMQ8 1374 aa15.71■□□□□ 0.11
YBX3-213ENST00000542641 KIAA0232Q92628 1395 aa15.71■□□□□ 0.11
YBX3-213ENST00000542641 PHRF1Q9P1Y6 1649 aaKnown RBP15.7■□□□□ 0.1
YBX3-213ENST00000542641 PRKRIP1Q9H875 184 aaPredicted RBP15.7■□□□□ 0.1
YBX3-213ENST00000542641 CPDO75976 1380 aa15.7■□□□□ 0.1
YBX3-213ENST00000542641 PARD3Q8TEW0 1356 aa15.7■□□□□ 0.1
YBX3-213ENST00000542641 MAP3K19Q56UN5 1328 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms