RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ADAMTSL3P82987 1691 aa12.71□□□□□ -0.37
CLIP1-212ENST00000540304 ITSN1Q15811 1721 aa12.71□□□□□ -0.38
CLIP1-212ENST00000540304 MON2Q7Z3U7 1717 aa12.71□□□□□ -0.38
CLIP1-212ENST00000540304 CPSF1Q10570 1443 aaKnown RBP12.71□□□□□ -0.38
CLIP1-212ENST00000540304 PTPRUQ92729 1446 aa12.7□□□□□ -0.38
CLIP1-212ENST00000540304 AKAP12Q02952 1782 aa12.7□□□□□ -0.38
CLIP1-212ENST00000540304 A0A0U1RQG5 324 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-212ENST00000540304 APAF1O14727 1248 aa12.7□□□□□ -0.38
CLIP1-212ENST00000540304 TBX22Q9Y458 520 aa12.7□□□□□ -0.38
CLIP1-212ENST00000540304 NUDT16Q96DE0 195 aaKnown RBP12.7□□□□□ -0.38
CLIP1-212ENST00000540304 SLC26A8Q96RN1 970 aa12.7□□□□□ -0.38
CLIP1-212ENST00000540304 ZNF142P52746 1687 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-212ENST00000540304 EDC4Q6P2E9 1401 aaKnown RBP12.69□□□□□ -0.38
CLIP1-212ENST00000540304 GOLGA2Q08379 1002 aa12.69□□□□□ -0.38
CLIP1-212ENST00000540304 RRP1P56182 461 aaKnown RBP12.69□□□□□ -0.38
CLIP1-212ENST00000540304 CCDC61Q9Y6R9 512 aa12.69□□□□□ -0.38
CLIP1-212ENST00000540304 PTCH1Q13635 1447 aa12.68□□□□□ -0.38
CLIP1-212ENST00000540304 TOPAZ1Q8N9V7 1692 aa12.68□□□□□ -0.38
CLIP1-212ENST00000540304 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-212ENST00000540304 IQSEC2Q5JU85 1478 aa12.68□□□□□ -0.38
CLIP1-212ENST00000540304 B4GALNT3Q6L9W6 998 aa12.67□□□□□ -0.38
CLIP1-212ENST00000540304 XRN1Q8IZH2 1706 aaKnown RBP12.67□□□□□ -0.38
CLIP1-212ENST00000540304 RUNDC1Q96C34 613 aa12.67□□□□□ -0.38
CLIP1-212ENST00000540304 BCL11BQ9C0K0 894 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-212ENST00000540304 DUSP27Q5VZP5 1158 aa12.66□□□□□ -0.38
CLIP1-212ENST00000540304 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP1-212ENST00000540304 AMOTL2Q9Y2J4 779 aa12.66□□□□□ -0.38
CLIP1-212ENST00000540304 PRR36Q9H6K5 1346 aa12.65□□□□□ -0.38
CLIP1-212ENST00000540304 FGD1P98174 961 aa12.65□□□□□ -0.38
CLIP1-212ENST00000540304 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
CLIP1-212ENST00000540304 TRMT2AQ8IZ69 625 aaKnown RBP12.64□□□□□ -0.39
CLIP1-212ENST00000540304 PIK3R4Q99570 1358 aa12.64□□□□□ -0.39
CLIP1-212ENST00000540304 U2AF1L5P0DN76 240 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-212ENST00000540304 U2AF1Q01081 240 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLIP1-212ENST00000540304 IL27Q8NEV9 243 aa12.64□□□□□ -0.39
CLIP1-212ENST00000540304 ZNF692Q9BU19 519 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-212ENST00000540304 NCKAP5LQ9HCH0 1330 aa12.64□□□□□ -0.39
CLIP1-212ENST00000540304 PNPLA6Q8IY17 1366 aa12.64□□□□□ -0.39
CLIP1-212ENST00000540304 NRKQ7Z2Y5 1582 aa12.63□□□□□ -0.39
CLIP1-212ENST00000540304 E9PSI1 815 aa12.63□□□□□ -0.39
CLIP1-212ENST00000540304 MAP2P11137 1827 aaKnown RBP12.63□□□□□ -0.39
CLIP1-212ENST00000540304 SETD1BQ9UPS6 1966 aaKnown RBP12.63□□□□□ -0.39
CLIP1-212ENST00000540304 WWC1Q8IX03 1113 aa12.62□□□□□ -0.39
CLIP1-212ENST00000540304 TCP11L2Q8N4U5 519 aa12.62□□□□□ -0.39
CLIP1-212ENST00000540304 RBM19Q9Y4C8 960 aaKnown RBP12.62□□□□□ -0.39
CLIP1-212ENST00000540304 NKTRP30414 1462 aaKnown RBP12.62□□□□□ -0.39
CLIP1-212ENST00000540304 NME9Q86XW9 330 aa12.61□□□□□ -0.39
CLIP1-212ENST00000540304 PLEKHG3A1L390 1219 aa12.61□□□□□ -0.39
CLIP1-212ENST00000540304 DIAPH1O60610 1272 aaKnown RBP12.61□□□□□ -0.39
CLIP1-212ENST00000540304 ZMYND15Q9H091 742 aa12.61□□□□□ -0.39
CLIP1-212ENST00000540304 U2SURPO15042 1029 aaKnown RBP12.6□□□□□ -0.39
CLIP1-212ENST00000540304 CCDC27Q2M243 656 aa12.6□□□□□ -0.39
CLIP1-212ENST00000540304 ANKLE2Q86XL3 938 aa12.6□□□□□ -0.39
CLIP1-212ENST00000540304 SPINK5Q9NQ38 1064 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-212ENST00000540304 AATKQ6ZMQ8 1374 aa12.6□□□□□ -0.39
CLIP1-212ENST00000540304 POLKQ9UBT6 870 aa12.6□□□□□ -0.39
CLIP1-212ENST00000540304 CDK12Q9NYV4 1490 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-212ENST00000540304 CHD2O14647 1828 aaKnown RBP12.59□□□□□ -0.39
CLIP1-212ENST00000540304 PLIN1O60240 522 aa12.59□□□□□ -0.39
CLIP1-212ENST00000540304 COG3Q96JB2 828 aa12.59□□□□□ -0.39
CLIP1-212ENST00000540304 ACEP12821 1306 aa12.59□□□□□ -0.39
CLIP1-212ENST00000540304 NEUROD2Q15784 382 aa12.59□□□□□ -0.39
CLIP1-212ENST00000540304 RRP7AQ9Y3A4 280 aaKnown RBP12.59□□□□□ -0.39
CLIP1-212ENST00000540304 DMRT2Q9Y5R5 561 aa12.59□□□□□ -0.39
CLIP1-212ENST00000540304 USP6P35125 1406 aa12.58□□□□□ -0.4
CLIP1-212ENST00000540304 WDR63Q8IWG1 891 aa12.58□□□□□ -0.4
CLIP1-212ENST00000540304 RGPD8O14715 1765 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-212ENST00000540304 KCNA6P17658 529 aa12.58□□□□□ -0.4
CLIP1-212ENST00000540304 PLEKHF1Q96S99 279 aa12.58□□□□□ -0.4
CLIP1-212ENST00000540304 NUTM2FA1L443 756 aa12.57□□□□□ -0.4
CLIP1-212ENST00000540304 PNNQ9H307 717 aaKnown RBP12.57□□□□□ -0.4
CLIP1-212ENST00000540304 ZRANB1Q9UGI0 708 aa12.57□□□□□ -0.4
CLIP1-212ENST00000540304 FMN2Q9NZ56 1722 aa12.57□□□□□ -0.4
CLIP1-212ENST00000540304 TTC21BQ7Z4L5 1316 aa12.57□□□□□ -0.4
CLIP1-212ENST00000540304 EXOC6Q8TAG9 804 aa12.57□□□□□ -0.4
CLIP1-212ENST00000540304 MAPK8IP3Q9UPT6 1336 aa12.56□□□□□ -0.4
CLIP1-212ENST00000540304 ANKARQ7Z5J8 1434 aa12.56□□□□□ -0.4
CLIP1-212ENST00000540304 NALCNQ8IZF0 1738 aa12.56□□□□□ -0.4
CLIP1-212ENST00000540304 PPM1GO15355 546 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-212ENST00000540304 FBLN1P23142 703 aa12.56□□□□□ -0.4
CLIP1-212ENST00000540304 AAMPQ13685 434 aa12.56□□□□□ -0.4
CLIP1-212ENST00000540304 LRRC7Q96NW7 1537 aa12.56□□□□□ -0.4
CLIP1-212ENST00000540304 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-212ENST00000540304 OVOS2A0A0J9YW53 1432 aa12.55□□□□□ -0.4
CLIP1-212ENST00000540304 OVOS2Q6IE36 1432 aa12.55□□□□□ -0.4
CLIP1-212ENST00000540304 SSH2Q76I76 1423 aa12.55□□□□□ -0.4
CLIP1-212ENST00000540304 ARXQ96QS3 562 aa12.55□□□□□ -0.4
CLIP1-212ENST00000540304 EMILIN1Q9Y6C2 1016 aa12.55□□□□□ -0.4
CLIP1-212ENST00000540304 FCHSD2O94868 740 aa12.54□□□□□ -0.4
CLIP1-212ENST00000540304 NPHP4O75161 1426 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-212ENST00000540304 TMPOP42166 694 aaKnown RBP12.53□□□□□ -0.4
CLIP1-212ENST00000540304 TTC21AQ8NDW8 1320 aa12.53□□□□□ -0.4
CLIP1-212ENST00000540304 CRBNQ96SW2 442 aa12.52□□□□□ -0.4
CLIP1-212ENST00000540304 IL13P35225 146 aa12.52□□□□□ -0.41
CLIP1-212ENST00000540304 PMFBP1Q8TBY8 1022 aa12.52□□□□□ -0.41
CLIP1-212ENST00000540304 RSPH6AQ9H0K4 717 aa12.52□□□□□ -0.41
CLIP1-212ENST00000540304 MYH16Q9H6N6 1097 aa12.52□□□□□ -0.41
CLIP1-212ENST00000540304 RBM10P98175 930 aaKnown RBP12.51□□□□□ -0.41
CLIP1-212ENST00000540304 RRS1Q15050 365 aaKnown RBP12.51□□□□□ -0.41
CLIP1-212ENST00000540304 NGDNQ8NEJ9 315 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms