RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 STRN4Q9NRL3 753 aa14.02□□□□□ -0.17
USP28-205ENST00000537706 FMN2Q9NZ56 1722 aa14.01□□□□□ -0.17
USP28-205ENST00000537706 CLTCL1P53675 1640 aa14.01□□□□□ -0.17
USP28-205ENST00000537706 NRXN1Q9ULB1 1477 aa14.01□□□□□ -0.17
USP28-205ENST00000537706 GPRASP1Q5JY77 1395 aa14.01□□□□□ -0.17
USP28-205ENST00000537706 BARGINQ6ZT62 677 aa14.01□□□□□ -0.17
USP28-205ENST00000537706 ATF5Q9Y2D1 282 aaPredicted RBP14.01□□□□□ -0.17
USP28-205ENST00000537706 ABCC11Q96J66 1382 aa14□□□□□ -0.17
USP28-205ENST00000537706 EVA1CP58658 441 aa14□□□□□ -0.17
USP28-205ENST00000537706 KIF1BO60333 1816 aa14□□□□□ -0.17
USP28-205ENST00000537706 STK32BQ9NY57 414 aa14□□□□□ -0.17
USP28-205ENST00000537706 DLC1Q96QB1 1528 aa13.99□□□□□ -0.17
USP28-205ENST00000537706 CHD4Q14839 1912 aa13.99□□□□□ -0.17
USP28-205ENST00000537706 PTGER2P43116 358 aa13.99□□□□□ -0.17
USP28-205ENST00000537706 USP35Q9P2H5 1018 aa13.99□□□□□ -0.17
USP28-205ENST00000537706 PLSCR1O15162 318 aa13.98□□□□□ -0.17
USP28-205ENST00000537706 MTFR1LQ9H019 292 aa13.98□□□□□ -0.17
USP28-205ENST00000537706 PLEKHH1Q9ULM0 1364 aa13.97□□□□□ -0.17
USP28-205ENST00000537706 PMFBP1Q8TBY8 1022 aa13.96□□□□□ -0.17
USP28-205ENST00000537706 SIRT1Q96EB6 747 aa13.96□□□□□ -0.17
USP28-205ENST00000537706 MYOM1P52179 1685 aa13.96□□□□□ -0.18
USP28-205ENST00000537706 TCP11L2Q8N4U5 519 aa13.95□□□□□ -0.18
USP28-205ENST00000537706 ARXQ96QS3 562 aa13.95□□□□□ -0.18
USP28-205ENST00000537706 ANO8Q9HCE9 1232 aaPredicted RBP13.95□□□□□ -0.18
USP28-205ENST00000537706 THRAP3Q9Y2W1 955 aaKnown RBP13.94□□□□□ -0.18
USP28-205ENST00000537706 HSPA6P17066 643 aa13.94□□□□□ -0.18
USP28-205ENST00000537706 ANKARQ7Z5J8 1434 aa13.93□□□□□ -0.18
USP28-205ENST00000537706 CASZ1Q86V15 1759 aa13.93□□□□□ -0.18
USP28-205ENST00000537706 MAP3K5Q99683 1374 aa13.93□□□□□ -0.18
USP28-205ENST00000537706 PAK3O75914 559 aaPredicted RBP13.93□□□□□ -0.18
USP28-205ENST00000537706 PELP1Q8IZL8 1130 aaKnown RBP13.93□□□□□ -0.18
USP28-205ENST00000537706 KIAA0232Q92628 1395 aa13.92□□□□□ -0.18
USP28-205ENST00000537706 CHRNA2Q15822 529 aa13.92□□□□□ -0.18
USP28-205ENST00000537706 OVOS2A0A0G2JMS6 1433 aa13.91□□□□□ -0.18
USP28-205ENST00000537706 OVOS2A0A0J9YW53 1432 aa13.91□□□□□ -0.18
USP28-205ENST00000537706 OVOS2Q6IE36 1432 aa13.91□□□□□ -0.18
USP28-205ENST00000537706 TMEM132EQ6IEE7 984 aa13.91□□□□□ -0.18
USP28-205ENST00000537706 EIF3AQ14152 1382 aaKnown RBP13.9□□□□□ -0.18
USP28-205ENST00000537706 YTHDC2Q9H6S0 1430 aaKnown RBP13.9□□□□□ -0.18
USP28-205ENST00000537706 SLC15A2Q16348 729 aa13.9□□□□□ -0.18
USP28-205ENST00000537706 PDGFDQ9GZP0 370 aaPredicted RBP13.9□□□□□ -0.18
USP28-205ENST00000537706 KNDC1Q76NI1 1749 aa13.9□□□□□ -0.18
USP28-205ENST00000537706 SSH2Q76I76 1423 aa13.9□□□□□ -0.18
USP28-205ENST00000537706 NGDNQ8NEJ9 315 aaKnown RBP13.9□□□□□ -0.18
USP28-205ENST00000537706 ADGRF5Q8IZF2 1346 aa13.89□□□□□ -0.19
USP28-205ENST00000537706 ACIN1Q9UKV3 1341 aaKnown RBP13.89□□□□□ -0.19
USP28-205ENST00000537706 RGPD3A6NKT7 1758 aaPredicted RBP13.89□□□□□ -0.19
USP28-205ENST00000537706 RGPD4Q7Z3J3 1758 aa13.89□□□□□ -0.19
USP28-205ENST00000537706 ITGAEP38570 1179 aa13.89□□□□□ -0.19
USP28-205ENST00000537706 ANKRD30BQ9BXX2 1392 aa13.89□□□□□ -0.19
USP28-205ENST00000537706 IFT172Q9UG01 1749 aa13.88□□□□□ -0.19
USP28-205ENST00000537706 PPLO60437 1756 aa13.88□□□□□ -0.19
USP28-205ENST00000537706 GRIN3BO60391 1043 aa13.88□□□□□ -0.19
USP28-205ENST00000537706 ZC3H6P61129 1189 aaKnown RBP13.88□□□□□ -0.19
USP28-205ENST00000537706 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
USP28-205ENST00000537706 POGKQ9P215 609 aa13.88□□□□□ -0.19
USP28-205ENST00000537706 GPBP1L1Q9HC44 474 aaPredicted RBP13.87□□□□□ -0.19
USP28-205ENST00000537706 LARP1Q6PKG0 1096 aaKnown RBP13.86□□□□□ -0.19
USP28-205ENST00000537706 SGIP1Q9BQI5 828 aa13.86□□□□□ -0.19
USP28-205ENST00000537706 DHX57Q6P158 1386 aaKnown RBP13.86□□□□□ -0.19
USP28-205ENST00000537706 POLD1P28340 1107 aa13.86□□□□□ -0.19
USP28-205ENST00000537706 SAFB2Q14151 953 aaKnown RBP eCLIP13.86□□□□□ -0.19
USP28-205ENST00000537706 ALS2Q96Q42 1657 aa13.85□□□□□ -0.19
USP28-205ENST00000537706 TRPM3Q9HCF6 1732 aaPredicted RBP13.85□□□□□ -0.19
USP28-205ENST00000537706 DDB1Q16531 1140 aa13.84□□□□□ -0.19
USP28-205ENST00000537706 TXNRD1Q16881 649 aa13.84□□□□□ -0.19
USP28-205ENST00000537706 PRAM1Q96QH2 718 aa13.84□□□□□ -0.19
USP28-205ENST00000537706 RGPD8O14715 1765 aaPredicted RBP13.84□□□□□ -0.19
USP28-205ENST00000537706 CAPN15O75808 1086 aa13.83□□□□□ -0.2
USP28-205ENST00000537706 RGL3Q3MIN7 710 aa13.82□□□□□ -0.2
USP28-205ENST00000537706 PROM2Q8N271 834 aa13.82□□□□□ -0.2
USP28-205ENST00000537706 SHANK3Q9BYB0 1731 aa13.82□□□□□ -0.2
USP28-205ENST00000537706 ATP10DQ9P241 1426 aa13.81□□□□□ -0.2
USP28-205ENST00000537706 APLP1P51693 650 aa13.81□□□□□ -0.2
USP28-205ENST00000537706 ATP7BP35670 1465 aa13.8□□□□□ -0.2
USP28-205ENST00000537706 PIK3C2GO75747 1445 aa13.8□□□□□ -0.2
USP28-205ENST00000537706 CDCA7Q9BWT1 371 aaPredicted RBP13.79□□□□□ -0.2
USP28-205ENST00000537706 SLC4A1APQ9BWU0 796 aaKnown RBP13.79□□□□□ -0.2
USP28-205ENST00000537706 PARP4Q9UKK3 1724 aaKnown RBP13.79□□□□□ -0.2
USP28-205ENST00000537706 LOC105371045A0A1W2PR82 267 aa13.78□□□□□ -0.2
USP28-205ENST00000537706 PRELPP51888 382 aa13.78□□□□□ -0.2
USP28-205ENST00000537706 SLC16A10Q8TF71 515 aa13.78□□□□□ -0.2
USP28-205ENST00000537706 CRYBG1Q9Y4K1 1723 aa13.78□□□□□ -0.2
USP28-205ENST00000537706 C14orf93Q9H972 538 aaKnown RBP13.78□□□□□ -0.2
USP28-205ENST00000537706 CRB1P82279 1406 aa13.77□□□□□ -0.2
USP28-205ENST00000537706 NUTM2GQ5VZR2 741 aa13.77□□□□□ -0.21
USP28-205ENST00000537706 CPDO75976 1380 aa13.77□□□□□ -0.21
USP28-205ENST00000537706 AATKQ6ZMQ8 1374 aa13.76□□□□□ -0.21
USP28-205ENST00000537706 TNS4Q8IZW8 715 aa13.76□□□□□ -0.21
USP28-205ENST00000537706 BCL9O00512 1426 aa13.76□□□□□ -0.21
USP28-205ENST00000537706 TULP4Q9NRJ4 1543 aa13.76□□□□□ -0.21
USP28-205ENST00000537706 HIRIP3Q9BW71 556 aaPredicted RBP13.75□□□□□ -0.21
USP28-205ENST00000537706 PEAK1Q9H792 1746 aa13.75□□□□□ -0.21
USP28-205ENST00000537706 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
USP28-205ENST00000537706 WASLO00401 505 aaPredicted RBP13.74□□□□□ -0.21
USP28-205ENST00000537706 TOM1L2Q6ZVM7 507 aa13.74□□□□□ -0.21
USP28-205ENST00000537706 ZNF526Q8TF50 670 aaPredicted RBP13.74□□□□□ -0.21
USP28-205ENST00000537706 PRR36Q9H6K5 1346 aa13.74□□□□□ -0.21
USP28-205ENST00000537706 PTF1AQ7RTS3 328 aa13.74□□□□□ -0.21
USP28-205ENST00000537706 MINK1Q8N4C8 1332 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms