RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RDXP35241 583 aaKnown RBP12.84□□□□□ -0.35
CLIP1-209ENST00000537178 HNRNPMP52272 730 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLIP1-209ENST00000537178 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-209ENST00000537178 RALYLQ86SE5 291 aaKnown RBP12.84□□□□□ -0.35
CLIP1-209ENST00000537178 NAT10Q9H0A0 1025 aaKnown RBP12.84□□□□□ -0.35
CLIP1-209ENST00000537178 KDM5DQ9BY66 1539 aa12.84□□□□□ -0.35
CLIP1-209ENST00000537178 APAF1O14727 1248 aa12.84□□□□□ -0.35
CLIP1-209ENST00000537178 ERCC4Q92889 916 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-209ENST00000537178 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.84□□□□□ -0.351e-9■■■■■ 73.1
CLIP1-209ENST00000537178 FKBP5Q13451 457 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-209ENST00000537178 CEP170Q5SW79 1584 aa12.83□□□□□ -0.36
CLIP1-209ENST00000537178 MTERF4Q7Z6M4 381 aaKnown RBP12.83□□□□□ -0.36
CLIP1-209ENST00000537178 KIF7Q2M1P5 1343 aa12.83□□□□□ -0.36
CLIP1-209ENST00000537178 KIAA0556O60303 1618 aa12.82□□□□□ -0.36
CLIP1-209ENST00000537178 DIAPH1O60610 1272 aaKnown RBP12.82□□□□□ -0.36
CLIP1-209ENST00000537178 OLFM4Q6UX06 510 aa12.82□□□□□ -0.36
CLIP1-209ENST00000537178 CCDC144AA2RUR9 1427 aa12.82□□□□□ -0.36
CLIP1-209ENST00000537178 AAMPQ13685 434 aa12.82□□□□□ -0.36
CLIP1-209ENST00000537178 NUP153P49790 1475 aaKnown RBP12.82□□□□□ -0.36
CLIP1-209ENST00000537178 MAP7D2Q96T17 732 aa12.81□□□□□ -0.36
CLIP1-209ENST00000537178 SDF4Q9BRK5 362 aa12.81□□□□□ -0.36
CLIP1-209ENST00000537178 BRMS1Q9HCU9 246 aa12.81□□□□□ -0.36
CLIP1-209ENST00000537178 MYO6Q9UM54 1294 aa12.81□□□□□ -0.36
CLIP1-209ENST00000537178 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLIP1-209ENST00000537178 XBP1P17861 261 aa12.81□□□□□ -0.36
CLIP1-209ENST00000537178 H0YHG0 523 aa12.8□□□□□ -0.36
CLIP1-209ENST00000537178 CWC15Q9P013 229 aaKnown RBP12.8□□□□□ -0.36
CLIP1-209ENST00000537178 EPS15P42566 896 aa12.8□□□□□ -0.36
CLIP1-209ENST00000537178 RIPK4P57078 832 aa12.79□□□□□ -0.36
CLIP1-209ENST00000537178 ZFYVE27Q5T4F4 411 aa12.79□□□□□ -0.36
CLIP1-209ENST00000537178 CCDC39Q9UFE4 941 aa12.79□□□□□ -0.36
CLIP1-209ENST00000537178 MRE11P49959 708 aa12.79□□□□□ -0.36
CLIP1-209ENST00000537178 HSP90AB2PQ58FF8 381 aa12.79□□□□□ -0.36
CLIP1-209ENST00000537178 CWC22Q9HCG8 908 aaKnown RBP12.79□□□□□ -0.36
CLIP1-209ENST00000537178 CAGE1Q8TC20 777 aa12.79□□□□□ -0.36
CLIP1-209ENST00000537178 GNAI1P63096 354 aa12.78□□□□□ -0.36
CLIP1-209ENST00000537178 FBXW7Q969H0 707 aa12.78□□□□□ -0.36
CLIP1-209ENST00000537178 C22orf23Q9BZE7 217 aa12.78□□□□□ -0.36
CLIP1-209ENST00000537178 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.77□□□□□ -0.36
CLIP1-209ENST00000537178 RAPGEF6Q8TEU7 1601 aa12.77□□□□□ -0.36
CLIP1-209ENST00000537178 PSMA5P28066 241 aa12.77□□□□□ -0.36
CLIP1-209ENST00000537178 PDILTQ8N807 584 aa12.77□□□□□ -0.37
CLIP1-209ENST00000537178 BRPF3Q9ULD4 1205 aa12.77□□□□□ -0.37
CLIP1-209ENST00000537178 ZNF608Q9ULD9 1512 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-209ENST00000537178 WASHC4Q2M389 1173 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 RBM33Q96EV2 1170 aaKnown RBP12.76□□□□□ -0.37
CLIP1-209ENST00000537178 LAMC1P11047 1609 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 TRPM1Q7Z4N2 1603 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 MBD3O95983 291 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 LNPKQ9C0E8 428 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 PODXL2Q9NZ53 605 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 ARHGEF12Q9NZN5 1544 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 NECTIN2Q92692 538 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 RALGAPBQ86X10 1494 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 CDC45O75419 566 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 LETM1O95202 739 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-209ENST00000537178 NASPP49321 788 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-209ENST00000537178 MINK1Q8N4C8 1332 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-209ENST00000537178 PTPRGP23470 1445 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 ITSN2Q9NZM3 1697 aa12.76□□□□□ -0.37
CLIP1-209ENST00000537178 TDRD9Q8NDG6 1382 aaKnown RBP12.76□□□□□ -0.37
CLIP1-209ENST00000537178 CCDC66A2RUB6 948 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 CCP110O43303 1012 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 UBE2Q2Q8WVN8 375 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 RUNDC1Q96C34 613 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 NEUROD6Q96NK8 337 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 PDCP20941 246 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 SART3Q15020 963 aaKnown RBP12.75□□□□□ -0.37
CLIP1-209ENST00000537178 FILIP1LQ4L180 1135 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 ZMYM4Q5VZL5 1548 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 SMARCE1Q969G3 411 aa12.75□□□□□ -0.37
CLIP1-209ENST00000537178 KINO60870 393 aaKnown RBP12.74□□□□□ -0.37
CLIP1-209ENST00000537178 PIP4K2AP48426 406 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-209ENST00000537178 FOSBP53539 338 aa12.74□□□□□ -0.37
CLIP1-209ENST00000537178 SYTL4Q96C24 671 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-209ENST00000537178 TRIM5Q9C035 493 aa12.74□□□□□ -0.37
CLIP1-209ENST00000537178 TSPYL4Q9UJ04 414 aa12.74□□□□□ -0.37
CLIP1-209ENST00000537178 USP47Q96K76 1375 aa12.74□□□□□ -0.37
CLIP1-209ENST00000537178 RAPGEF4Q8WZA2 1011 aa12.73□□□□□ -0.37
CLIP1-209ENST00000537178 NINLQ9Y2I6 1382 aa12.73□□□□□ -0.37
CLIP1-209ENST00000537178 HMGN5P82970 282 aaKnown RBP12.73□□□□□ -0.37
CLIP1-209ENST00000537178 KIAA0586Q9BVV6 1533 aa12.73□□□□□ -0.37
CLIP1-209ENST00000537178 ZRSR2Q15696 482 aaKnown RBP12.73□□□□□ -0.37
CLIP1-209ENST00000537178 SAMD1Q6SPF0 538 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-209ENST00000537178 RIC3Q7Z5B4 369 aa12.73□□□□□ -0.37
CLIP1-209ENST00000537178 UBTFL1P0CB47 393 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-209ENST00000537178 DHX8Q14562 1220 aaKnown RBP12.72□□□□□ -0.37
CLIP1-209ENST00000537178 MCM2P49736 904 aa12.72□□□□□ -0.37
CLIP1-209ENST00000537178 TSPYL1Q9H0U9 437 aa12.72□□□□□ -0.37
CLIP1-209ENST00000537178 CLASRPQ8N2M8 674 aaKnown RBP12.72□□□□□ -0.37
CLIP1-209ENST00000537178 TXLNAP40222 546 aa12.72□□□□□ -0.37
CLIP1-209ENST00000537178 PSME1Q06323 249 aa12.72□□□□□ -0.37
CLIP1-209ENST00000537178 RNF214Q8ND24 703 aa12.71□□□□□ -0.37
CLIP1-209ENST00000537178 CNTROBQ8N137 903 aa12.71□□□□□ -0.37
CLIP1-209ENST00000537178 PAF1Q8N7H5 531 aa12.71□□□□□ -0.37
CLIP1-209ENST00000537178 TBC1D2BQ9UPU7 963 aa12.71□□□□□ -0.37
CLIP1-209ENST00000537178 PDS5BQ9NTI5 1447 aa12.71□□□□□ -0.37
CLIP1-209ENST00000537178 NFKBIBQ15653 356 aa12.71□□□□□ -0.38
CLIP1-209ENST00000537178 CCDC27Q2M243 656 aa12.71□□□□□ -0.38
CLIP1-209ENST00000537178 PNISRQ8TF01 805 aaKnown RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms