RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 ATP7BP35670 1465 aa28.56■■■□□ 2.16
TNFRSF1B-204ENST00000536782 CDK19Q9BWU1 502 aa28.55■■■□□ 2.16
TNFRSF1B-204ENST00000536782 BTG4Q9NY30 223 aa28.55■■■□□ 2.16
TNFRSF1B-204ENST00000536782 COL14A1Q05707 1796 aaKnown RBP28.55■■■□□ 2.16
TNFRSF1B-204ENST00000536782 ZRANB1Q9UGI0 708 aa28.54■■■□□ 2.16
TNFRSF1B-204ENST00000536782 ITSN1Q15811 1721 aa28.54■■■□□ 2.16
TNFRSF1B-204ENST00000536782 KIAA1210Q9ULL0 1709 aa28.53■■■□□ 2.16
TNFRSF1B-204ENST00000536782 NBPF1Q3BBV0 1214 aa28.5■■■□□ 2.15
TNFRSF1B-204ENST00000536782 KRT27Q7Z3Y8 459 aa28.5■■■□□ 2.15
TNFRSF1B-204ENST00000536782 DEFB132Q7Z7B7 95 aa28.49■■■□□ 2.15
TNFRSF1B-204ENST00000536782 A0A0G2JS52 829 aa28.48■■■□□ 2.15
TNFRSF1B-204ENST00000536782 MYT1Q01538 1121 aa28.48■■■□□ 2.15
TNFRSF1B-204ENST00000536782 CCDC61Q9Y6R9 512 aa28.48■■■□□ 2.15
TNFRSF1B-204ENST00000536782 TOPAZ1Q8N9V7 1692 aa28.48■■■□□ 2.15
TNFRSF1B-204ENST00000536782 SF3B2Q13435 895 aaKnown RBP28.47■■■□□ 2.15
TNFRSF1B-204ENST00000536782 PRDM11Q9NQV5 511 aa28.47■■■□□ 2.15
TNFRSF1B-204ENST00000536782 FAM98CQ17RN3 349 aaKnown RBP28.46■■■□□ 2.15
TNFRSF1B-204ENST00000536782 POLR3AO14802 1390 aaPredicted RBP28.46■■■□□ 2.15
TNFRSF1B-204ENST00000536782 ACEP12821 1306 aa28.44■■■□□ 2.14
TNFRSF1B-204ENST00000536782 PHRF1Q9P1Y6 1649 aaKnown RBP28.44■■■□□ 2.14
TNFRSF1B-204ENST00000536782 NBPF8Q3BBV2 869 aa28.44■■■□□ 2.14
TNFRSF1B-204ENST00000536782 PLEKHG3A1L390 1219 aa28.43■■■□□ 2.14
TNFRSF1B-204ENST00000536782 THSD7AQ9UPZ6 1657 aa28.42■■■□□ 2.14
TNFRSF1B-204ENST00000536782 SPATA31A5Q5VU36 1347 aa28.42■■■□□ 2.14
TNFRSF1B-204ENST00000536782 SPATA31A7Q8IWB4 1347 aa28.42■■■□□ 2.14
TNFRSF1B-204ENST00000536782 CENPJQ9HC77 1338 aaPredicted RBP28.41■■■□□ 2.14
TNFRSF1B-204ENST00000536782 KIAA0232Q92628 1395 aa28.4■■■□□ 2.14
TNFRSF1B-204ENST00000536782 NUTM2GQ5VZR2 741 aa28.4■■■□□ 2.14
TNFRSF1B-204ENST00000536782 SRPK2P78362 688 aaKnown RBP28.39■■■□□ 2.14
TNFRSF1B-204ENST00000536782 CHRNA2Q15822 529 aa28.37■■■□□ 2.13
TNFRSF1B-204ENST00000536782 ZC3H6P61129 1189 aaKnown RBP28.36■■■□□ 2.13
TNFRSF1B-204ENST00000536782 ABTB2Q8N961 1025 aa28.36■■■□□ 2.13
TNFRSF1B-204ENST00000536782 L3MBTL2Q969R5 705 aa28.36■■■□□ 2.13
TNFRSF1B-204ENST00000536782 RGPD1P0DJD0 1748 aa28.35■■■□□ 2.13
TNFRSF1B-204ENST00000536782 CABP2Q9NPB3 220 aa28.34■■■□□ 2.13
TNFRSF1B-204ENST00000536782 TNS1Q9HBL0 1735 aaKnown RBP28.34■■■□□ 2.13
TNFRSF1B-204ENST00000536782 PPIP5K1Q6PFW1 1433 aa28.34■■■□□ 2.13
TNFRSF1B-204ENST00000536782 STRN4Q9NRL3 753 aa28.33■■■□□ 2.13
TNFRSF1B-204ENST00000536782 FAM182BQ5T319 152 aa28.32■■■□□ 2.12
TNFRSF1B-204ENST00000536782 SPATA31A1Q5TZJ5 1347 aa28.32■■■□□ 2.12
TNFRSF1B-204ENST00000536782 BAG6P46379 1132 aa28.31■■■□□ 2.12
TNFRSF1B-204ENST00000536782 NRKQ7Z2Y5 1582 aa28.3■■■□□ 2.12
TNFRSF1B-204ENST00000536782 SIN3AQ96ST3 1273 aa28.3■■■□□ 2.12
TNFRSF1B-204ENST00000536782 NLRP13Q86W25 1043 aa28.29■■■□□ 2.12
TNFRSF1B-204ENST00000536782 QRICH2Q9H0J4 1663 aa28.29■■■□□ 2.12
TNFRSF1B-204ENST00000536782 LRP5O75197 1615 aa28.29■■■□□ 2.12
TNFRSF1B-204ENST00000536782 USP19O94966 1318 aa28.28■■■□□ 2.12
TNFRSF1B-204ENST00000536782 EVA1CP58658 441 aa28.28■■■□□ 2.12
TNFRSF1B-204ENST00000536782 BRD4O60885 1362 aaPredicted RBP28.27■■■□□ 2.12
TNFRSF1B-204ENST00000536782 LMO7Q8WWI1 1683 aa28.27■■■□□ 2.12
TNFRSF1B-204ENST00000536782 CABP1Q9NZU7 370 aa28.26■■■□□ 2.11
TNFRSF1B-204ENST00000536782 CPDO75976 1380 aa28.25■■■□□ 2.11
TNFRSF1B-204ENST00000536782 NEUROD1Q13562 356 aa28.25■■■□□ 2.11
TNFRSF1B-204ENST00000536782 CAMTA1Q9Y6Y1 1673 aa28.25■■■□□ 2.11
TNFRSF1B-204ENST00000536782 USP35Q9P2H5 1018 aa28.24■■■□□ 2.11
TNFRSF1B-204ENST00000536782 SSH2Q76I76 1423 aa28.24■■■□□ 2.11
TNFRSF1B-204ENST00000536782 GCP02774 474 aa28.23■■■□□ 2.11
TNFRSF1B-204ENST00000536782 EVC2Q86UK5 1308 aa28.22■■■□□ 2.11
TNFRSF1B-204ENST00000536782 TRPM1Q7Z4N2 1603 aa28.22■■■□□ 2.11
TNFRSF1B-204ENST00000536782 DISP2A7MBM2 1401 aa28.22■■■□□ 2.11
TNFRSF1B-204ENST00000536782 EN1Q05925 392 aaPredicted RBP28.22■■■□□ 2.11
TNFRSF1B-204ENST00000536782 BARGINQ6ZT62 677 aa28.21■■■□□ 2.11
TNFRSF1B-204ENST00000536782 ROCK2O75116 1388 aaKnown RBP28.21■■■□□ 2.11
TNFRSF1B-204ENST00000536782 USP6P35125 1406 aa28.2■■■□□ 2.11
TNFRSF1B-204ENST00000536782 PSDA5PKW4 1024 aaPredicted RBP28.2■■■□□ 2.1
TNFRSF1B-204ENST00000536782 LARP1Q6PKG0 1096 aaKnown RBP28.19■■■□□ 2.1
TNFRSF1B-204ENST00000536782 FAM196AQ6ZSG2 479 aa28.19■■■□□ 2.1
TNFRSF1B-204ENST00000536782 NLRP6P59044 892 aa28.18■■■□□ 2.1
TNFRSF1B-204ENST00000536782 TCP11L2Q8N4U5 519 aa28.17■■■□□ 2.1
TNFRSF1B-204ENST00000536782 PDE3BQ13370 1112 aa28.15■■■□□ 2.1
TNFRSF1B-204ENST00000536782 THRAP3Q9Y2W1 955 aaKnown RBP28.14■■■□□ 2.1
TNFRSF1B-204ENST00000536782 ZBTB7CA1YPR0 619 aa28.13■■■□□ 2.09
TNFRSF1B-204ENST00000536782 TRIM37O94972 964 aa28.12■■■□□ 2.09
TNFRSF1B-204ENST00000536782 ZNF692Q9BU19 519 aaPredicted RBP28.12■■■□□ 2.09
TNFRSF1B-204ENST00000536782 COL5A2P05997 1499 aaPredicted RBP28.12■■■□□ 2.09
TNFRSF1B-204ENST00000536782 EZH2Q15910 746 aaKnown RBP28.11■■■□□ 2.09
TNFRSF1B-204ENST00000536782 CAMKK2Q96RR4 588 aa28.11■■■□□ 2.09
TNFRSF1B-204ENST00000536782 PARP4Q9UKK3 1724 aaKnown RBP28.11■■■□□ 2.09
TNFRSF1B-204ENST00000536782 SLIT3O75094 1523 aa28.11■■■□□ 2.09
TNFRSF1B-204ENST00000536782 RREB1Q92766 1687 aa28.1■■■□□ 2.09
TNFRSF1B-204ENST00000536782 COL18A1P39060 1754 aa28.1■■■□□ 2.09
TNFRSF1B-204ENST00000536782 AATKQ6ZMQ8 1374 aa28.1■■■□□ 2.09
TNFRSF1B-204ENST00000536782 PIK3C2AO00443 1686 aa28.1■■■□□ 2.09
TNFRSF1B-204ENST00000536782 CRB1P82279 1406 aa28.08■■■□□ 2.09
TNFRSF1B-204ENST00000536782 NUP188Q5SRE5 1749 aa28.06■■■□□ 2.08
TNFRSF1B-204ENST00000536782 AKAP12Q02952 1782 aa28.06■■■□□ 2.08
TNFRSF1B-204ENST00000536782 APBA3O96018 575 aa28.06■■■□□ 2.08
TNFRSF1B-204ENST00000536782 R3HDM1Q15032 1099 aaKnown RBP28.06■■■□□ 2.08
TNFRSF1B-204ENST00000536782 TTC21BQ7Z4L5 1316 aa28.06■■■□□ 2.08
TNFRSF1B-204ENST00000536782 SBF2Q86WG5 1849 aa28.04■■■□□ 2.08
TNFRSF1B-204ENST00000536782 PEAK1Q9H792 1746 aa28.04■■■□□ 2.08
TNFRSF1B-204ENST00000536782 RGPD5Q99666 1765 aa28.04■■■□□ 2.08
TNFRSF1B-204ENST00000536782 TTC21AQ8NDW8 1320 aa28.03■■■□□ 2.08
TNFRSF1B-204ENST00000536782 KCNH5Q8NCM2 988 aa28.03■■■□□ 2.08
TNFRSF1B-204ENST00000536782 PARD3Q8TEW0 1356 aa28.02■■■□□ 2.08
TNFRSF1B-204ENST00000536782 WNK3Q9BYP7 1800 aa28.02■■■□□ 2.08
TNFRSF1B-204ENST00000536782 CPSF1Q10570 1443 aaKnown RBP28.01■■■□□ 2.08
TNFRSF1B-204ENST00000536782 TOM1L2Q6ZVM7 507 aa28.01■■■□□ 2.07
TNFRSF1B-204ENST00000536782 CARD11Q9BXL7 1154 aa28.01■■■□□ 2.07
TNFRSF1B-204ENST00000536782 KTN1Q86UP2 1357 aaKnown RBP28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms